Basic Information

Insect: Bombus terrestris
Gene Symbol: -
Assembly: GCA_000214255.1
Location: NC:5381385-5394953[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 3.6e-05 0.0022 17.5 1.4 1 23 448 470 448 470 0.96

2 18 0.0021 0.13 11.9 1.6 1 20 476 495 476 498 0.94

3 18 8.8e-06 0.00054 19.4 1.4 1 23 504 526 504 526 0.98

4 18 5.1e-05 0.0031 17.0 4.4 1 21 532 552 532 554 0.95

5 18 6.9e-06 0.00042 19.8 5.6 1 23 560 582 560 582 0.99

6 18 1.6e-05 0.00097 18.6 5.3 1 23 588 610 588 610 0.97

7 18 6e-05 0.0037 16.8 6.9 1 23 616 638 616 638 0.96

8 18 5.9e-08 3.6e-06 26.3 2.7 1 23 644 666 644 666 0.98

9 18 4.3e-05 0.0027 17.3 6.7 1 23 672 694 672 694 0.97

10 18 1.3e-05 0.00082 18.9 5.8 1 23 700 722 700 722 0.98

11 18 3.6e-07 2.2e-05 23.8 2.9 1 23 728 750 728 750 0.98

12 18 5.3e-06 0.00033 20.1 7.8 1 23 756 778 756 778 0.98

13 18 1.7e-05 0.001 18.6 9.1 1 23 784 806 784 806 0.98

14 18 2.2e-05 0.0013 18.2 7.5 1 23 812 834 812 834 0.98

15 18 0.0011 0.065 12.9 8.8 1 21 840 860 840 862 0.94

16 18 8.1e-06 0.00049 19.6 0.4 1 23 868 890 868 890 0.98

17 18 0.013 0.79 9.5 4.3 1 23 900 922 900 922 0.99

18 18 3.1e-07 1.9e-05 24.0 1.3 1 23 928 950 928 950 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	3.6e-05	0.0022	17.5	1.4	1	23	448	470	448	470	0.96
2	18	0.0021	0.13	11.9	1.6	1	20	476	495	476	498	0.94
3	18	8.8e-06	0.00054	19.4	1.4	1	23	504	526	504	526	0.98
4	18	5.1e-05	0.0031	17.0	4.4	1	21	532	552	532	554	0.95
5	18	6.9e-06	0.00042	19.8	5.6	1	23	560	582	560	582	0.99
6	18	1.6e-05	0.00097	18.6	5.3	1	23	588	610	588	610	0.97
7	18	6e-05	0.0037	16.8	6.9	1	23	616	638	616	638	0.96
8	18	5.9e-08	3.6e-06	26.3	2.7	1	23	644	666	644	666	0.98
9	18	4.3e-05	0.0027	17.3	6.7	1	23	672	694	672	694	0.97
10	18	1.3e-05	0.00082	18.9	5.8	1	23	700	722	700	722	0.98
11	18	3.6e-07	2.2e-05	23.8	2.9	1	23	728	750	728	750	0.98
12	18	5.3e-06	0.00033	20.1	7.8	1	23	756	778	756	778	0.98
13	18	1.7e-05	0.001	18.6	9.1	1	23	784	806	784	806	0.98
14	18	2.2e-05	0.0013	18.2	7.5	1	23	812	834	812	834	0.98
15	18	0.0011	0.065	12.9	8.8	1	21	840	860	840	862	0.94
16	18	8.1e-06	0.00049	19.6	0.4	1	23	868	890	868	890	0.98
17	18	0.013	0.79	9.5	4.3	1	23	900	922	900	922	0.99
18	18	3.1e-07	1.9e-05	24.0	1.3	1	23	928	950	928	950	0.97

Sequence Information

Coding Sequence: ATGAACAGTGAGCAGCATGCATTGCCAGCGACTACGCAGGCACAACAAGAGGATGTAAACGCGGGTCAAAGTGGTCGTCCTTCATACCCAGGTGGTTTGGCTACAACAACCAGTCTTGGCAATGTAGGGAGTACCCCGCATTCATCCGCGGACCTGCGTGTAGGTACAGCCGTAGCGTTAGCCTCCTCGGTAGCTAAATATTGGGTCCTCACCAATCTCTTTCCTGGACCGCTACCTCAGGTCTCAGTCTATCATCATTCCCACCACAACTCCTCACATAGGAGTAGTGGAGGTGGAGAGGCATCTTCCAAAGAGCCAGCCTCTTCATTGAACCAAGAAATGGCGTTGACTTCCAGTTCGCATCATCAGTCAACACCTACACACCATCATCACCAACCTTCAGTTAGCAGTAGCAGTCATCATAGTTCTTTACAACCAAATTCACAGcaGATACCAGTTTCTCTACCAGGCCTTAATTTAGACGGGGCACATATACCTGCCAGCGTCAGTCATTTACAAGCAGCACATGCACAAATGCAACAAATGCAGGCAGCACAACAACAACAGCTGCatcagcagcaacagcagcagccccaacaacaacaacagcagcagcaacaacaacaatctCACCATCAGATGCAAAATCATCAAAACGCTCAGAACAGTGGACCAACTGCACATAATCAAAACGCACAGAGAGATGATAACAAGGTGAAAGATGAAAGTGGAAGTTGCACAACTGAACGTTGCAGTGACAATCAAGTTCACTGTCAAGTTCAATGTGACCTCCAATTACAAACATCTCAAGATTTACAACAAAGTCTTatgcagcagcagcaacaacagcagcaacaaaTTGGTGTAAACATAAGCGGAAATTCATCCAGTGAAGGCGGAAGtcaaaataatacagaaaagcctgaaaaagagaaagaattgCGTCAACTAAATATGACGCAattCCAAGTGCCAGATTTAAAACCAGGAGGTCATATGATGGATGTAAGAACAGCTGATGGATCAGTCGTGAAAATTAGTGCTGGGAATGAGCAAGATTTAGCAAAAACACTTGGTGTTGAAATGGTGCAAAATATGTACAAGGTAAATGTTGAGGATATTAATCAGCTTTTAGCATATCATGAAGTATTTGGAAAACTACAAAGTGAAATAGCAGCTGGTACAACCTTAGTTGGAAGTACAGTTCCTACTCAAACAGTTACCACTATACAAAATGGAACTCCAATTGTACAGCAAGTTCAATTAAATAAGTTTGATATTAAATCAAGCGATGGTGAAGCTACACCAGGACCAAGCGCTTCGCCTGTATCAGTTGGAAGTCATGCATGTGAAATATGTGgaaaaatttttcagtttcgCTATCAGCTTATCGTTCATCGTAGATATCATACGGAAAGGAAACCTTTTACTTGTCAGGTGTGTGGCAAGGCctttttaaatgcaaatgatTTGACACGGCATGGGAAGTGTCACCTAGGTGGATCCATGTTTACTTGTACAGTTTGTTTTCATGTATTTGCAAATGCACCCTCTTTGGAACGTCATATGAAACGACACGCTACCGATAAACCGTATAATTGTACCGTATGTGGAAAAAGTTTCGCAAGAAAAGAACATTTGGATAATCATACGCGTTGTCATACTGGGGAAACACCTTACAGgtGCCAGTACTGTTCAAAGACGTTTACTAGGAAGGAACATATGGTAAATCATGTTCGCAAACATACGGGTGAAACACCTCATCGATgtgatatttgtaaaaagagCTTTACGCGCAAAGAACATTTTATGAACCATGTTATGTGGCACACGGGAGAAACTCCTCATCATTGTCAAGCTTGTGGCAAGAAATATACACGTAAAGAACATCTCGCAAATCATATGCGTTCACATACCAATGATACACCGTTTCGCTGTGAAATATGCGGTAAGTCGTTTACAAGAAAGGAGCACTTCACGAACCACATAATGTGGCACACGGGTGAGACGCCGCACCGCTGTGATTTCTGCTCGAAGACATTCACGCGAAAGGAGCATCTTTTGAACCACGTTCGCCAGCACACGGGTGAGTCTCCACATCGATGCGGCTTCTGCTCCAAATCGTTCACCAGAAAGGAACACCTTGTTAACCACATCCGCCAACACACAGGAGAGACGCCCTTCCGCTGTCAGTACTGTCCGAAAGCATTTACGCGGAAGGATCATCTGGTGAACCATGTCAGACAACACACGGGTGAGTCACCGCACAAGTGCCAGTATTGCACCAAATCCTTCACGAGGAAGGAACATTTGACAAATCACGTGCGTCAACACACAGGCGAATCGCCACACCGATGCCACTTCTGCTCCAAGTCATTTACTCGTAAGGAGCATTTGACGAATCATGTGCGAATCCACACTGGTGAATCACCTCATAGGTGTGAATTCTGTCAGAGAACGTTCACCAGGAAAGAACATCTAAATAATCATCTCCGTCAGCATACCGGAGATTCATCGCACTGCTGCAACGTGTGCTCGAAACCATTTACAAGAAAGGAACATCTCGTAAATCATATGCGATGTCATACTGGTGAACGTCCATTTGTATGCACAGAATGTGGCAAAAGCTTCCCCTTAAAGGGTAATCTACTTTTCCACATGCGTTCGCACAATAAAGGCAGCAACGCCGAGAGACCGTACCGTTGCGATCTTTGTCCAAAAGACTTTATGTGCAAAGGACATTTAGTGTCTCATAGACGATCACATTCGGACGAGCGACCACATAGCTGTCCAGATTGCGGGAAAACTTTCGTTGAAAAGGGCAATATGCTGAGACATTTGAGAAAGCACGCAGCGGAAGGTCCGCCAACACAAGTCAGCACGCCCTCTGCAATTCCTCAATCCGGTGTTCTGCCCATTCCGGCGGCAGCAGTTCTGGTCGGCCATCCTTTGGCACCCCCTGCACCACCCGTAGTCCCACAACACACTGTAGTTGTGCCTACTCCTCCGGGTGTACTGACCTCCTACTAA
Protein Sequence: MNSEQHALPATTQAQQEDVNAGQSGRPSYPGGLATTTSLGNVGSTPHSSADLRVGTAVALASSVAKYWVLTNLFPGPLPQVSVYHHSHHNSSHRSSGGGEASSKEPASSLNQEMALTSSSHHQSTPTHHHHQPSVSSSSHHSSLQPNSQQIPVSLPGLNLDGAHIPASVSHLQAAHAQMQQMQAAQQQQLHQQQQQQPQQQQQQQQQQQSHHQMQNHQNAQNSGPTAHNQNAQRDDNKVKDESGSCTTERCSDNQVHCQVQCDLQLQTSQDLQQSLMQQQQQQQQQIGVNISGNSSSEGGSQNNTEKPEKEKELRQLNMTQFQVPDLKPGGHMMDVRTADGSVVKISAGNEQDLAKTLGVEMVQNMYKVNVEDINQLLAYHEVFGKLQSEIAAGTTLVGSTVPTQTVTTIQNGTPIVQQVQLNKFDIKSSDGEATPGPSASPVSVGSHACEICGKIFQFRYQLIVHRRYHTERKPFTCQVCGKAFLNANDLTRHGKCHLGGSMFTCTVCFHVFANAPSLERHMKRHATDKPYNCTVCGKSFARKEHLDNHTRCHTGETPYRCQYCSKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQACGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCGFCSKSFTRKEHLVNHIRQHTGETPFRCQYCPKAFTRKDHLVNHVRQHTGESPHKCQYCTKSFTRKEHLTNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGESPHRCEFCQRTFTRKEHLNNHLRQHTGDSSHCCNVCSKPFTRKEHLVNHMRCHTGERPFVCTECGKSFPLKGNLLFHMRSHNKGSNAERPYRCDLCPKDFMCKGHLVSHRRSHSDERPHSCPDCGKTFVEKGNMLRHLRKHAAEGPPTQVSTPSAIPQSGVLPIPAAAVLVGHPLAPPAPPVVPQHTVVVPTPPGVLTSY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00899003;
90% Identity: iTF_00983718;
80% Identity: -