Basic Information

Insect: Bombus confusus
Gene Symbol: -
Assembly: GCA_014737475.1
Location: JACXIV010000052.1:5252769-5265035[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 4.5e-05 0.0035 17.5 1.4 1 23 445 467 445 467 0.96

2 18 0.0027 0.21 11.9 1.6 1 20 473 492 473 495 0.94

3 18 1.1e-05 0.00086 19.4 1.4 1 23 501 523 501 523 0.98

4 18 6.5e-05 0.005 17.0 4.4 1 21 529 549 529 551 0.95

5 18 8.7e-06 0.00067 19.8 5.6 1 23 557 579 557 579 0.99

6 18 2e-05 0.0015 18.6 5.3 1 23 585 607 585 607 0.97

7 18 7.6e-05 0.0058 16.8 6.9 1 23 613 635 613 635 0.96

8 18 7.4e-08 5.7e-06 26.3 2.7 1 23 641 663 641 663 0.98

9 18 5.5e-05 0.0042 17.3 6.7 1 23 669 691 669 691 0.97

10 18 1.7e-05 0.0013 18.9 5.8 1 23 697 719 697 719 0.98

11 18 4.5e-07 3.5e-05 23.8 2.9 1 23 725 747 725 747 0.98

12 18 6.7e-06 0.00052 20.1 7.8 1 23 753 775 753 775 0.98

13 18 2.1e-05 0.0016 18.6 9.1 1 23 781 803 781 803 0.98

14 18 2.8e-05 0.0021 18.2 7.5 1 23 809 831 809 831 0.98

15 18 0.0013 0.1 12.9 8.8 1 21 837 857 837 859 0.94

16 18 1e-05 0.00078 19.6 0.4 1 23 865 887 865 887 0.98

17 18 0.016 1.3 9.5 4.3 1 23 897 919 897 919 0.99

18 18 3.9e-07 3e-05 24.0 1.3 1 23 925 947 925 947 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	4.5e-05	0.0035	17.5	1.4	1	23	445	467	445	467	0.96
2	18	0.0027	0.21	11.9	1.6	1	20	473	492	473	495	0.94
3	18	1.1e-05	0.00086	19.4	1.4	1	23	501	523	501	523	0.98
4	18	6.5e-05	0.005	17.0	4.4	1	21	529	549	529	551	0.95
5	18	8.7e-06	0.00067	19.8	5.6	1	23	557	579	557	579	0.99
6	18	2e-05	0.0015	18.6	5.3	1	23	585	607	585	607	0.97
7	18	7.6e-05	0.0058	16.8	6.9	1	23	613	635	613	635	0.96
8	18	7.4e-08	5.7e-06	26.3	2.7	1	23	641	663	641	663	0.98
9	18	5.5e-05	0.0042	17.3	6.7	1	23	669	691	669	691	0.97
10	18	1.7e-05	0.0013	18.9	5.8	1	23	697	719	697	719	0.98
11	18	4.5e-07	3.5e-05	23.8	2.9	1	23	725	747	725	747	0.98
12	18	6.7e-06	0.00052	20.1	7.8	1	23	753	775	753	775	0.98
13	18	2.1e-05	0.0016	18.6	9.1	1	23	781	803	781	803	0.98
14	18	2.8e-05	0.0021	18.2	7.5	1	23	809	831	809	831	0.98
15	18	0.0013	0.1	12.9	8.8	1	21	837	857	837	859	0.94
16	18	1e-05	0.00078	19.6	0.4	1	23	865	887	865	887	0.98
17	18	0.016	1.3	9.5	4.3	1	23	897	919	897	919	0.99
18	18	3.9e-07	3e-05	24.0	1.3	1	23	925	947	925	947	0.97

Sequence Information

Coding Sequence: ATGAACAGTGAGCAGCATGCATTGCCAGCGACTACGCAGGCACAACAAGAGGATGTAAACGCGGGTCAAAGTGGTCGTCCTTCATACCCAGGTGGTTTGGCTACAACAACCAGTCTTGGCAATGTAGGGAGTACCCCGCATTCATCCGCGGACCTGCGTGTAGGTACAGCCGTAGCGTTAGCCTCCTCGGTAGCTAAATATTGGGTCCTCACCAATCTCTTTCCTGGACCGCTACCTCAGGTCTCAGTCTATCATCATTCCCACCACAACTCCTCACATAGGAGTAGTGGAGGTGGAGAGGCATCTTCCAAAGAGCCAGCCTCTTCATTGAACCAAGAAATGGCGTTGACTTCCAGTTCGCATCATCAATCAACACCTACACACCATCATCACCAACCTTCAGTTAGCAGTAGCAGTCATCATAGTTCTTTACAACCAAATTCACAGCAGATACCAGTTTCTCTACCAGGCCTTAATTTAGACGGGGCACATATACCTGCCAGCGTCAGTCATTTGCAAGCAGCACATGCACAAATGCAACAAATGCAGGCAGCACAACAACAACAGCTGCATCAGCAGCAGCAGCAGCCCCAACAACAGCAGCAGCAACAACAACAATCTCACCATCAGATGCAAAACCATCAAAATGCTCAGAACAGTGGACCAACTGCACATAATCAAAACGCACAGAGAGATGATAACAAGGTGAAAGATGAAAGTGGAAGTTGCACAACTGAACGTTGCAGTGACAATCAAGTTCACTGTCAAGTTCAATGTGACCTCCAATTACAAACATCTCAAGATTTACAACAAAGTCTCATGCAGCAGCAGCAACAACAGCAGCAACAAATTGGTGTAAACATAAGCGGAAATTCATCAAACGAAGGCGGAAGTCAAAATAATACAGAAAAGCCTGAAAAAGAGAAAGAATTGCGTCAACTAAATATGACGCAATTCCAAGTACCAGATTTAAAACCAGGAGGTCATATGATGGATGTAAGAACAGCTGATGGATCAGTTGTGAAAATCAGCGCTGGGAATGAGCAAGATTTAGCAAAAACGCTTGGTGTTGAAATGGTGCAAAATATGTACAAGGTAAATGTCGAGGATATTAATCAGCTTTTAGCATATCATGAAGTATTTGGAAAACTACAAAGTGAAATAGCAGCTGGTACAACCTTAGTTGGAAGTACAGTTCCTACTCAAACAGTTACCACTATACAAAATGGAACTCCAATTGTACAACAAGTTCAATTAAATAAGTTTGATATTAAATCAAGCGATGGCGAAGCTACACCAGGACCAAGTGCTTCGCCTGTATCAGTTGGAAGTCATGCATGTGAAATATGTGGAAAAATTTTTCAGTTTCGGTATCAGCTTATTGTTCATCGCAGATACCATACGGAAAGGAAACCTTTTACTTGTCAGGTGTGTGGCAAGGCCTTCTTAAATGCAAATGATTTGACACGGCATGGGAAGTGTCACCTAGGTGGATCCATGTTTACCTGTACAGTTTGTTTTCATGTATTTGCAAATGCACCCTCTTTGGAACGTCACATGAAACGACATGCTACCGATAAACCGTATAATTGTACCGTATGTGGAAAAAGTTTTGCAAGAAAAGAACATTTGGATAATCATACGCGTTGTCATACTGGGGAAACACCTTACAGATGCCAATACTGTTCAAAGACGTTTACTAGGAAGGAACATATGGTAAATCATGTTCGCAAACATACGGGTGAAACACCTCATCGATGTGATATTTGTAAAAAGAGCTTTACCCGCAAAGAACATTTTATGAACCATGTTATGTGGCACACAGGGGAAACTCCTCATCATTGTCAAGCTTGTGGCAAGAAATATACACGTAAAGAACATCTCGCAAACCATATGCGTTCACATACCAATGATACACCATTTCGCTGTGAAATATGCGGTAAGTCGTTTACAAGAAAGGAGCACTTCACGAACCACATAATGTGGCACACGGGTGAGACGCCGCACCGCTGTGATTTCTGCTCGAAGACATTCACGCGAAAGGAGCATCTTTTGAACCACGTTCGCCAGCACACGGGTGAGTCTCCACACCGATGCGGCTTCTGCTCCAAATCGTTCACCAGAAAGGAACACCTTGTTAACCACATCCGCCAACACACAGGAGAGACGCCCTTCCGCTGTCAGTACTGTCCGAAAGCATTTACGCGGAAGGATCATCTGGTGAACCATGTCAGGCAACACACGGGTGAGTCACCGCACAAGTGCCAGTATTGCACCAAATCCTTCACGAGGAAGGAACATTTGACAAATCACGTGCGTCAACACACAGGCGAATCGCCACACCGATGCCACTTCTGCTCCAAGTCATTTACTCGTAAGGAGCATTTGACGAATCATGTGCGAATCCACACCGGTGAATCACCTCATAGGTGTGAATTCTGTCAAAGAACGTTCACCAGGAAAGAACATCTAAATAATCATCTCCGTCAACATACCGGAGATTCATCGCACTGCTGCAACGTGTGCTCCAAACCATTTACAAGAAAGGAACATCTCGTAAATCATATGCGATGTCATACTGGTGAACGTCCATTTGTATGCACAGAATGTGGCAAAAGCTTTCCTTTAAAGGGTAATCTACTTTTCCACATGCGTTCGCACAATAAAGGCAGTAACGCCGAGAGACCATACCGTTGCGATCTTTGTCCAAAAGACTTTATGTGCAAAGGACATTTAGTGTCTCACAGACGCTCACATTCGGACGAGAGACCACATAGCTGTCCAGATTGCGGGAAAACTTTCGTTGAAAAGGGCAATATGCTGAGACACTTGAGAAAACACGCAGCGGAAGGTCCACCAACACAAGTTAGCACGCCCTCTGCAATTCCTCAATCCGGTGTTTTGCCGATTCCAGCGGCAGCAGTTCTGGTCGGCCATCCTTTGGCACCCCCTGCACCACCCGTAGTTCCACAACACACCGTTGTTGTGCCTACTCCTCCGGGTGTACTGACCTCCTACTAA
Protein Sequence: MNSEQHALPATTQAQQEDVNAGQSGRPSYPGGLATTTSLGNVGSTPHSSADLRVGTAVALASSVAKYWVLTNLFPGPLPQVSVYHHSHHNSSHRSSGGGEASSKEPASSLNQEMALTSSSHHQSTPTHHHHQPSVSSSSHHSSLQPNSQQIPVSLPGLNLDGAHIPASVSHLQAAHAQMQQMQAAQQQQLHQQQQQPQQQQQQQQQSHHQMQNHQNAQNSGPTAHNQNAQRDDNKVKDESGSCTTERCSDNQVHCQVQCDLQLQTSQDLQQSLMQQQQQQQQQIGVNISGNSSNEGGSQNNTEKPEKEKELRQLNMTQFQVPDLKPGGHMMDVRTADGSVVKISAGNEQDLAKTLGVEMVQNMYKVNVEDINQLLAYHEVFGKLQSEIAAGTTLVGSTVPTQTVTTIQNGTPIVQQVQLNKFDIKSSDGEATPGPSASPVSVGSHACEICGKIFQFRYQLIVHRRYHTERKPFTCQVCGKAFLNANDLTRHGKCHLGGSMFTCTVCFHVFANAPSLERHMKRHATDKPYNCTVCGKSFARKEHLDNHTRCHTGETPYRCQYCSKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQACGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCGFCSKSFTRKEHLVNHIRQHTGETPFRCQYCPKAFTRKDHLVNHVRQHTGESPHKCQYCTKSFTRKEHLTNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGESPHRCEFCQRTFTRKEHLNNHLRQHTGDSSHCCNVCSKPFTRKEHLVNHMRCHTGERPFVCTECGKSFPLKGNLLFHMRSHNKGSNAERPYRCDLCPKDFMCKGHLVSHRRSHSDERPHSCPDCGKTFVEKGNMLRHLRKHAAEGPPTQVSTPSAIPQSGVLPIPAAAVLVGHPLAPPAPPVVPQHTVVVPTPPGVLTSY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00899003;
90% Identity: iTF_00983718;
80% Identity: -