Basic Information

Insect: Ceratina calcarata
Gene Symbol: -
Assembly: GCA_026724355.1
Location: JAKKRE010000004.1:1762368-1767580[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 4.9e-05 0.006 17.5 1.4 1 23 448 470 448 470 0.96

2 18 0.0029 0.36 11.9 1.6 1 20 476 495 476 498 0.94

3 18 1.2e-05 0.0015 19.4 1.4 1 23 504 526 504 526 0.98

4 18 7.1e-05 0.0087 17.0 4.4 1 21 532 552 532 554 0.95

5 18 9.6e-06 0.0012 19.8 5.6 1 23 560 582 560 582 0.99

6 18 2.2e-05 0.0027 18.6 5.3 1 23 588 610 588 610 0.97

7 18 8.3e-05 0.01 16.8 6.9 1 23 616 638 616 638 0.96

8 18 8.1e-08 9.9e-06 26.3 2.7 1 23 644 666 644 666 0.98

9 18 6e-05 0.0073 17.3 6.7 1 23 672 694 672 694 0.97

10 18 1.9e-05 0.0023 18.9 5.8 1 23 700 722 700 722 0.98

11 18 5e-07 6e-05 23.8 2.9 1 23 728 750 728 750 0.98

12 18 7.4e-06 0.0009 20.1 7.8 1 23 756 778 756 778 0.98

13 18 2.3e-05 0.0028 18.6 9.1 1 23 784 806 784 806 0.98

14 18 3e-05 0.0037 18.2 7.5 1 23 812 834 812 834 0.98

15 18 0.0036 0.44 11.7 7.9 1 21 840 860 840 862 0.94

16 18 1.1e-05 0.0014 19.6 0.4 1 23 868 890 868 890 0.98

17 18 0.027 3.3 8.9 4.5 1 23 900 922 900 922 0.98

18 18 4.3e-07 5.3e-05 24.0 1.3 1 23 928 950 928 950 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	4.9e-05	0.006	17.5	1.4	1	23	448	470	448	470	0.96
2	18	0.0029	0.36	11.9	1.6	1	20	476	495	476	498	0.94
3	18	1.2e-05	0.0015	19.4	1.4	1	23	504	526	504	526	0.98
4	18	7.1e-05	0.0087	17.0	4.4	1	21	532	552	532	554	0.95
5	18	9.6e-06	0.0012	19.8	5.6	1	23	560	582	560	582	0.99
6	18	2.2e-05	0.0027	18.6	5.3	1	23	588	610	588	610	0.97
7	18	8.3e-05	0.01	16.8	6.9	1	23	616	638	616	638	0.96
8	18	8.1e-08	9.9e-06	26.3	2.7	1	23	644	666	644	666	0.98
9	18	6e-05	0.0073	17.3	6.7	1	23	672	694	672	694	0.97
10	18	1.9e-05	0.0023	18.9	5.8	1	23	700	722	700	722	0.98
11	18	5e-07	6e-05	23.8	2.9	1	23	728	750	728	750	0.98
12	18	7.4e-06	0.0009	20.1	7.8	1	23	756	778	756	778	0.98
13	18	2.3e-05	0.0028	18.6	9.1	1	23	784	806	784	806	0.98
14	18	3e-05	0.0037	18.2	7.5	1	23	812	834	812	834	0.98
15	18	0.0036	0.44	11.7	7.9	1	21	840	860	840	862	0.94
16	18	1.1e-05	0.0014	19.6	0.4	1	23	868	890	868	890	0.98
17	18	0.027	3.3	8.9	4.5	1	23	900	922	900	922	0.98
18	18	4.3e-07	5.3e-05	24.0	1.3	1	23	928	950	928	950	0.97

Sequence Information

Coding Sequence: ATGAACAGCGAGCAGCATGCATTGCCAGCGACTACGCAGGCACAACAAGAGGATGTAAACGTGGGTCAAAGTGGTCGTCCTTCGTACCCAGGTGGTTTGGCTACAGCAACCAGTCTTGGCAATGTAGGGAGTACCCCACATTCGTCCGCGGACCTGCGTGTAGGTACAGCCGTAGCGTTAGCCTCCTCGGTAGCTAAATATTGGGTCCTCACGAATCTGTTTCCTGGACCGCTACCTCAGGTTTCGGTCTATCATTCCCACCACAACTCCTCGCATAGGAGTAGTGGCGGTGGAGAGGCATCCTCCAAAGAACCAGCCTCTTCTTTGAACCAAGAAATGGCATTGACCTCCAGTTCACATCATCAATCAACGCCTACACACCACCATCACCAACCTTCAGTTAGCAGTAGCAGTCATCATAACTCTTTGCAACCGAATCCACAGCAGATACCAGTGTCTCTGCCAGGCCTTAATCTAGACGGGGCGCAcatacctacgagcgtcagtcacttacaagcagcgcatgcacaaatgcagcaacaaatgcaggcagcacaacaacaacagctgcatcagcagcaacagccccaacagcagcaacaacaacaatcccatcaccaaatgcaaaatcatcaaaatgctcagaacagtggaccaactGCACACAATCAAAACGCACAGAGAGATGATAACAAGGTGAAAGATGAAGGCGGAAGCTGCACGACCGAacgttgtagcgataaccaagtgcactgtcaggttcagtgtgacctccagttacaaacgtctcaagagttacaacaaagtcttattcagcagcagcagcagcaacaacaacagcagcaacagcaacaacagatcggTGTGAATATAAGTGGAAATTCTTCTTCCGACGGTGGAACTCAGAATAATGCAGAGAAACCGGAGAAGGAGAAAGAGCTGCGTCAACTGAACATGACGCAATTCCAAGTGCCAGACTTAAAACCAGGAGGTCACATGATGGACGTGAGAACGGCCGATGGTTCGGTCGTGAAAATCAGTGCAGGGAACGAGCAGGATCTGGCGAAGACTCTCGGTGTTGAAATGGTGCAAAATATGTACAAAGTGAATGTTGAGGATATTAATCAGCTATTGGCGTATCACGAAGTGTTTGGAAAATTACAAAGTGAAATCGCAGTTGGTACAACGTTAGTCGGAAGCACAGTTCCTACGCAAACAGTTACCACTATACAAAATGGAACGCCGATCGTGCAACAGGTTCAGTTAAATAAGTTCGATATTAAATCAAGCGACGGTGAAGCTACACCAGGACCAAGCGCCTCGCCCGTCTCAGTTGGTAGTCACGCATGTGAAATATGCGGGAAAATATTTCAGTTTCGCTATCAGCTCATCGTGCACCGTCGATACCATACGGAAAGAAAACCTTTTACCTGTCAGGTTTGTGGGAAGGCATTTTTGAATGCAAATGATTTGACCCGACACGGAAAATGTCATTTGGGTGGACCTATGTTTACTTGTACAGTCTGCTTTCACGTATTCGCGAATGCACCATCCctggaacgtcacatgaagcgacacgccaccgataaaccgtacaattgtaccgtttgtggaaaaagtttcgcgaggaaggagcacttggataatcatactcggtgtcatactggagaaacaccgtacaggtgccagtattgttcgaaaacgttcaccaggaaggagcatatggtgaatcatgttcgtaaacatacgggtgaaacgccgcatcgatgtgatatttgtaaaaagagttttactcggaaggaacattttatgaatcacgttatgtggcatacgggtgagactcctcatcattgtcaagcctgtggcaagaaatacacccgtaaagaacatcttgcgaaccatatgcgttcacataccaatgatacaccgtttcgctgtgaaatatgcggtaagtcgtttacgagaaaggagcacttcacgaaccacataatgtggcatacgggcgagacgccgcaccgatgcgacttctgctcgaagacgtttacgcgaaaggaacatctgctgaaccacgtacgccagcacacgggtgagtctccacaccgatgcggcttctgctccaaatcgttcaccagaaaggaacaccttgttaaccacatccgccaacacacaggagagacgcccttccgctgtcaatactgtccgaaagcatttacgcgtaaggatcatctggtgaaccatgtcaggcagcacacgggtgagtcaccgcacaagtgccagtattgcaccaaatccttcacgaggaaggaacatttgacaaatcacgtgcgtcaacacacaggcgaatcgccacaccgatgccacttctgctccaagtcatttactcgtaaggagcatttgacgaatcacgtgcgaatccacaccggcgaatcaccgcacaggtgtgaattctgtcagagaacgttcaccaggaaagaacatctaaataatcatctccgtcaacataccggagattcatcgcactgttgcaacgtgtgcgcgaaaccgtttacgaGAAAGgagcatctcgtaaatcatatgcgatgtcatactggtgaacgtccgttcgtgtgcacagaatgtggcaaaagttttccgctgaaaggcaatctgcttttccacatgcgttcgcataataagggcagcaacgccgagaggccgttccgctgcgacctgtgtccgaaagacttcatgtgcaagggtcacctagtgtcccacagacggtcgcactcggacgaacgaccgcacagctgccccgactgcgggaagacgttcgtcGAGAAAGGGAACATGCTCAGACACCTGAGGAAGCACGCGACGGAGGGGCCACCGACGCAAGTCAGCACACCTTCGGCGATCCCTCAGTCCGGCGTTCTACCGATCCCGGCGGCGGCGGTTCTGGTCGGTCATCCTTTGGCACCGCCTGCGCCGCCCGTGGTACCGCAACACACCGTCGTCGTGCCTACCCCTCCGGGTGTGTTGACCTCCTACTAA
Protein Sequence: MNSEQHALPATTQAQQEDVNVGQSGRPSYPGGLATATSLGNVGSTPHSSADLRVGTAVALASSVAKYWVLTNLFPGPLPQVSVYHSHHNSSHRSSGGGEASSKEPASSLNQEMALTSSSHHQSTPTHHHHQPSVSSSSHHNSLQPNPQQIPVSLPGLNLDGAHIPTSVSHLQAAHAQMQQQMQAAQQQQLHQQQQPQQQQQQQSHHQMQNHQNAQNSGPTAHNQNAQRDDNKVKDEGGSCTTERCSDNQVHCQVQCDLQLQTSQELQQSLIQQQQQQQQQQQQQQQIGVNISGNSSSDGGTQNNAEKPEKEKELRQLNMTQFQVPDLKPGGHMMDVRTADGSVVKISAGNEQDLAKTLGVEMVQNMYKVNVEDINQLLAYHEVFGKLQSEIAVGTTLVGSTVPTQTVTTIQNGTPIVQQVQLNKFDIKSSDGEATPGPSASPVSVGSHACEICGKIFQFRYQLIVHRRYHTERKPFTCQVCGKAFLNANDLTRHGKCHLGGPMFTCTVCFHVFANAPSLERHMKRHATDKPYNCTVCGKSFARKEHLDNHTRCHTGETPYRCQYCSKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQACGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCGFCSKSFTRKEHLVNHIRQHTGETPFRCQYCPKAFTRKDHLVNHVRQHTGESPHKCQYCTKSFTRKEHLTNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGESPHRCEFCQRTFTRKEHLNNHLRQHTGDSSHCCNVCAKPFTRKEHLVNHMRCHTGERPFVCTECGKSFPLKGNLLFHMRSHNKGSNAERPFRCDLCPKDFMCKGHLVSHRRSHSDERPHSCPDCGKTFVEKGNMLRHLRKHATEGPPTQVSTPSAIPQSGVLPIPAAAVLVGHPLAPPAPPVVPQHTVVVPTPPGVLTSY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00899003;
90% Identity: iTF_00983718;
80% Identity: -