Lvul028387.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Linnaemya vulpina
Gene Symbol
-
Assembly
GCA_963675445.1
Location
OY776280.1:2102931-2108873[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 0.67 79 5.2 1.5 1 23 235 258 235 258 0.88
2 25 1.8e-06 0.00022 22.7 0.4 1 23 264 287 264 287 0.97
3 25 0.0082 0.97 11.2 0.6 2 20 317 335 316 338 0.92
4 25 0.01 1.2 11.0 1.1 1 23 415 438 415 438 0.96
5 25 0.11 13 7.7 1.1 2 23 446 467 445 467 0.97
6 25 0.0012 0.14 13.9 0.6 2 23 512 533 511 533 0.96
7 25 0.086 10 8.0 0.7 2 20 546 564 545 567 0.94
8 25 0.0023 0.28 13.0 0.7 1 23 646 669 646 669 0.93
9 25 0.0031 0.37 12.6 0.3 1 20 676 695 676 697 0.95
10 25 0.026 3 9.7 0.7 2 23 709 731 708 731 0.94
11 25 0.00037 0.043 15.5 0.4 2 23 746 767 745 767 0.97
12 25 6.5e-07 7.7e-05 24.1 2.8 1 23 773 795 773 795 0.98
13 25 0.0065 0.78 11.5 1.2 1 23 938 962 938 962 0.95
14 25 6.1 7.2e+02 2.2 1.3 1 23 999 1022 999 1022 0.92
15 25 0.011 1.3 10.8 4.6 1 23 1032 1054 1032 1055 0.95
16 25 0.0089 1.1 11.1 3.6 1 23 1062 1084 1062 1084 0.97
17 25 0.0018 0.21 13.3 0.5 2 19 1111 1128 1110 1131 0.94
18 25 0.0015 0.18 13.6 4.8 1 23 1184 1207 1184 1207 0.97
19 25 0.045 5.3 8.9 2.4 1 23 1244 1267 1244 1267 0.97
20 25 0.067 8 8.4 6.2 1 23 1299 1322 1299 1322 0.97
21 25 6.2e-07 7.3e-05 24.2 0.8 2 23 1352 1373 1351 1373 0.95
22 25 6.5e-06 0.00077 21.0 0.4 1 23 1379 1401 1379 1401 0.99
23 25 0.00042 0.05 15.3 2.0 1 23 1407 1429 1407 1429 0.94
24 25 6.9e-06 0.00082 20.9 1.7 1 23 1435 1457 1435 1457 0.99
25 25 0.0003 0.035 15.8 0.3 1 22 1463 1484 1463 1487 0.91

Sequence Information

Coding Sequence
ATGACCGGTGATATTAAAATTGAGTGTTTTATAAATGGGGTGCAGTATAAATGTCGCACTTGCTTTGATCCTGGACGAACATTTGTTTCTCTCACGGATGAGTGCAGCAACACAAAAACATGGAGTGATTTCTTAAAGGATATCGTCAGCTTACagaCAGCCGACGATGACTTACTTCCAAATACAATTTGCTGCAAATGTTCGGCTAAACTAAAAAGCTCCTACGATTTTATACATCAGATTTATGATGTGACCACAAAATATTCTCAATTATTAGCTGTTTGTAGCGATCCTCTACAATGTGGGATTTCCACTGAGCTGGATAATATAAACGACTGTTTGGCTGAATCTACAATCGATTTACCACTGAACCAGTATATGCCAGAAATTAAGCTAGAGGAAGATTTTCCAGATTCGTAtaagattaaattaaataatagtcaTTCTGTGGATAGAGAAGCAAAATTGGAAAACGAAGgTTTGCAAGCAACACAGGACTCTTTAGCGGATGACGATTTTATGTCATCATCTGACCAAATAGACGCAAGCAAAACAAGATCTGTGAAAAAACGAAGATGGCAAAACATTTGCGATGATAATAATGACGATGATTATAGAAATGAATCcggTCAGCCAATTAAGAGGAAAAAAGGTCGGCAAGCTCCAGACTACTacgataaaattgaaaaagttaatgATCGTTTTTTATGTCTTATATGTCAAAAAACGTTTTCGTTAAGAAAAGATTGTGGTCGCCATATAGCATCGATACATTTACGCCGAACACCATTTCCTTGTGGAATTTGCGGACAAAGTTTTGGACGCAAGGACAAGTTACAAAGGCACGTGAGACGCATGCATTCTGCTGGAGCAGACTATCCACCTAATCATAAAGAATGGCTATTTGGTGATCGTTTATACTGCAAACCAGATGCTTGGATTGTTGTGCAATGTAAATTATGTGATGCGGAATTTAGAACGACTAAAGAACTTCGTCAGCATTTGCCAAAACACAGTAATTTAGATAGTCTTCATAAACTAGAATTAAGCAGTGACTGTGTCCAACATTTGTTTGGAAATATGATTAATTTGAATAGAGTCAAGGAAAGCATTTGCAAAGATATTCGTGAGAAACATTGGTTTAAATACTACACTATCCTGAATAAACATTCTTATGAAATGTCTCTAAGTGATACAGAAGCTGAAGATTTGGAAGAAGAAAGTGCAGAGCATGACGAAAAATATAAGTGTGACTTGTGCGCTAaggaattttcatttaaatatcaaGCTTTTTCTCATTTGAAGGAAGCCCATAGTGAAGATGATATACCTTTGAAGTGTAATCTTTGCAAACtagaatttatttcaatcaaaaTGTACGAACAACATTCTAAAACTCATTGTCGTAATagacataaaattttactttgtgCGCATTGCCCGGGTAAGTTTGTTTGGcctgaaaatatgaaaaatcatAATTGCGCCACAAAACTTCAACTGATGCCACCAGCACCAACTAAAGAGAAAATGGTTTGcaatatatgcgaccgtaaatTTGAGGTAAAAAcgaaatatgaaaaacatttgGGAACACATAAAGATGGAAGGCTCGCATCTGCCAAAACTATAATTCGTTGTGGTCTTTGTGCACatacttttgaaaaactgaGAAATCTGCGACAACATATGCCGTTGCATGCCGATGGTAAGACTGGCATAGATTTTAAAGGCAGCATTTACGTAAAACGGTTTGAACGATCGAAATCAATTGACTTTGCTCTACTGCAACAGGAAATACAAAATGCTTATAGAAAATCTCAAATCAGTCGCTTTTACCGAGCAATTGATAGGGACGGAAACGAAATGGACATTTTAGATTCGGATAGTGACTCAGAAGAATCCAAATCTAAtgaggaaaatgaagaaaagaaATACTCGTGCCAACTCTGTGGTGCAGCATATAAAAGACGGAAGCTTTTATTAAATCATCAATTTGAACAGCACAATGGTATACCATTACCTTTCACCTGTAAAGACTGTACTCAACAATATGTAAGTAATGATTTGCTACAGCAACATTTAGTAAGAAATTGCTGGAATGAACACCGACGAATTGCTCAACAATGTGACTATTGCAATGCTCGCTTTATTTGGCAAAACAATCTTCGGAAGCATAAAGAAATTCAGCATAAAAATCAGAAGCACTCAAAGCCTCAAAGAGCCAGTACACTGAAATGTGAGTATTGTGAAAAGGTATTTATATGGCCAAAGGATTTAGTTCGTCACAGAAAAACGCACACTGAAGGGAAAAAGTTTACATGTCCTCATTGCGATCGCAAATTTCAGCGcaaagataatttattaactCACATAAGGATACATTGCCCTGATGGTATTCCCACTATTTCAAATCCTGGTAAAAGTATCGATTACATTCTACCACATTTGATAAAACCACACGGATGCAAACGCATCAAATGCATGATCTGTTTTTCAGAACACAATCGTATCCGCGACTTACGATCTCATTTGCGAACTCATCGGTATAgtgttaatttcaataaaagaaaagaaacggAATCTTTAGATGTAATATCATCACAACTCTATCCAGATGAACCACTACCTTTGCCGGAAGAGATGTTAGAGAAACGTATTGGATTTGATATAGCAGCAGAAAATAATTTGGAACGTTTTTACTCTATAACAAATGAAAATGGCTACGAAGTTTCTTTAGACAGTTCTGAGACGGAAAGCGATACCGATGATAACGATACAGATGAAGAAGACGATAAATCAAAACGTATCTATAAATGCGATATATGTCCTCAATTGAGCTTTAATCGTAAATATAAACTTTTCGCTCATCAAACCAATGAGCATACATGGGAGGAAGCTCGTCACGTTTGTATACACTGCAACGGTCGTTTTCTTTCGTCATATATGCTGCAGCTACATTACAAGGATCAgtgtaaaaatactaaaaagcgTCACTTTTGCCGCCGCTGTCCGCTGCGTTTCATGTGGAAAACTAATATGAAGGCTCACATCGTAATGGAACATGGCCATGAAATCGATTCAAATCGAGGTCATGAATGTTTTCTTTGTCAAGAAAAGTTTTTCCCCCAGAAGGAACTTAAGCGTCATTTGATCACACATCATTCCGCTGATGCTGAACTGCATTATTGCCTACTTTGCCCTAAAACATTCTTCAGCGTGGAGCATCTCAATGATCATTTGAGCCGCCATCGCTTAACTACAGCGGATGTCAAAACCGTCGAAAGTATAATACATTCCACATGTTGGCCAAACGgagaaaaatcaattaaatgcaaaatatgtgaACTTACCTTTAAAACTCTGAATAATCTAagagaacatttttcaaatagaaatcGACAAAAGTTGTGCGGTAGTCAACATTCATTGGCTAATTACACAGCTACTAATCAAAAGGGATTCGAACTGCATTTGGAGCTAGACTCTGAAACAGAGGCAGAAGATGATGTAGAGACAAgcaaaaatcataaaaacacGTTTTATCCCTATAACTGCTGCATGTGCAGTATGTCGTTTAAAAGGAAATACCAAATGGCTCAACATCAGCGTTCATTGCATAATTATGAATTGCTAGTATTAAAGTGTGAACGTTGTATTTTTAGGACAGTCTCACAGAAAGTTTTAGATTATCATAAGCTCACGCAGTGTTTTAACTCTGAAAAACATTTCGAATGTGAACACTGCAAATTCAAGTTTATGTGGCGAGAAAATCTAGAAAATCACATTTCTATGTTTCATGGTGTGAAAGAGTTGTCCAAAGCAACTGATGTTATATGCTCGACGTCTTCTATTGAACCTGTGCCAACCAACAGCAAAAGCGATACCAATATTTTTGAATGTATGGACTGTCATCGTCGCTACAACCGTAAAGATCGATATAAAGCACATTTTAAGAAATTCCATAACAATGATTTTCAGATTACGGTAGACATGAATATTTCCAATAGAAAAGTTCGAAAACAGTCCACACCGaaatcagataaaaaatttttgtgtgctttttgtGGCCTCTCCTTTTCAAACAACTCAAATCTTACGGTACACATGAGAAGACATACAGGAGAGAAGCCATTTAAGTGTGATCTTTGTGAAATGGCATTTCCACGTACATCTGATTTACAAGCTCACCGACGCACACATACTGGTGAACGTCCTTTCAAATGTATTAGCTGCGATAAATCATTTTCACGACAATACAAATTAAACGTTCACAATCGCATACACACAGGGGAACGTCCATATGAATGTACGTTTTGCCAGAAATCATTTATACAGTCGAATGATTTAACACTACATTTACGGCGACATAGTGGTGAAAGGCCTTACACATGTGACAACTGTGGTGAAGGTTTTATATCTGCTACATCTCTTAAACAACACCGTAGTTCTAAAGGACATCAGGAAgaaaaaagtgatttgaaaattagTATGCAGGAAATGACcagttttgatataaaattctaa
Protein Sequence
MTGDIKIECFINGVQYKCRTCFDPGRTFVSLTDECSNTKTWSDFLKDIVSLQTADDDLLPNTICCKCSAKLKSSYDFIHQIYDVTTKYSQLLAVCSDPLQCGISTELDNINDCLAESTIDLPLNQYMPEIKLEEDFPDSYKIKLNNSHSVDREAKLENEGLQATQDSLADDDFMSSSDQIDASKTRSVKKRRWQNICDDNNDDDYRNESGQPIKRKKGRQAPDYYDKIEKVNDRFLCLICQKTFSLRKDCGRHIASIHLRRTPFPCGICGQSFGRKDKLQRHVRRMHSAGADYPPNHKEWLFGDRLYCKPDAWIVVQCKLCDAEFRTTKELRQHLPKHSNLDSLHKLELSSDCVQHLFGNMINLNRVKESICKDIREKHWFKYYTILNKHSYEMSLSDTEAEDLEEESAEHDEKYKCDLCAKEFSFKYQAFSHLKEAHSEDDIPLKCNLCKLEFISIKMYEQHSKTHCRNRHKILLCAHCPGKFVWPENMKNHNCATKLQLMPPAPTKEKMVCNICDRKFEVKTKYEKHLGTHKDGRLASAKTIIRCGLCAHTFEKLRNLRQHMPLHADGKTGIDFKGSIYVKRFERSKSIDFALLQQEIQNAYRKSQISRFYRAIDRDGNEMDILDSDSDSEESKSNEENEEKKYSCQLCGAAYKRRKLLLNHQFEQHNGIPLPFTCKDCTQQYVSNDLLQQHLVRNCWNEHRRIAQQCDYCNARFIWQNNLRKHKEIQHKNQKHSKPQRASTLKCEYCEKVFIWPKDLVRHRKTHTEGKKFTCPHCDRKFQRKDNLLTHIRIHCPDGIPTISNPGKSIDYILPHLIKPHGCKRIKCMICFSEHNRIRDLRSHLRTHRYSVNFNKRKETESLDVISSQLYPDEPLPLPEEMLEKRIGFDIAAENNLERFYSITNENGYEVSLDSSETESDTDDNDTDEEDDKSKRIYKCDICPQLSFNRKYKLFAHQTNEHTWEEARHVCIHCNGRFLSSYMLQLHYKDQCKNTKKRHFCRRCPLRFMWKTNMKAHIVMEHGHEIDSNRGHECFLCQEKFFPQKELKRHLITHHSADAELHYCLLCPKTFFSVEHLNDHLSRHRLTTADVKTVESIIHSTCWPNGEKSIKCKICELTFKTLNNLREHFSNRNRQKLCGSQHSLANYTATNQKGFELHLELDSETEAEDDVETSKNHKNTFYPYNCCMCSMSFKRKYQMAQHQRSLHNYELLVLKCERCIFRTVSQKVLDYHKLTQCFNSEKHFECEHCKFKFMWRENLENHISMFHGVKELSKATDVICSTSSIEPVPTNSKSDTNIFECMDCHRRYNRKDRYKAHFKKFHNNDFQITVDMNISNRKVRKQSTPKSDKKFLCAFCGLSFSNNSNLTVHMRRHTGEKPFKCDLCEMAFPRTSDLQAHRRTHTGERPFKCISCDKSFSRQYKLNVHNRIHTGERPYECTFCQKSFIQSNDLTLHLRRHSGERPYTCDNCGEGFISATSLKQHRSSKGHQEEKSDLKISMQEMTSFDIKF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01138243; iTF_01399687; iTF_01074689; iTF_01398750; iTF_00742114; iTF_01109483; iTF_00435798; iTF_00760310; iTF_00899896;
90% Identity
-
80% Identity
-