Prud011808.1
Basic Information
- Insect
- Panzeria rudis
- Gene Symbol
- -
- Assembly
- GCA_956483635.1
- Location
- OY101448.1:5553140-5561229[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.0034 0.38 12.7 0.7 2 20 32 50 31 53 0.93 2 23 0.016 1.8 10.6 1.7 1 23 130 153 130 153 0.96 3 23 0.06 6.7 8.8 1.3 2 23 161 182 160 182 0.97 4 23 0.0048 0.55 12.3 1.2 2 23 228 249 227 249 0.97 5 23 0.076 8.5 8.5 0.7 2 20 262 280 261 283 0.94 6 23 0.0021 0.23 13.4 1.6 1 23 362 385 362 385 0.95 7 23 0.0031 0.35 12.9 0.3 1 20 392 411 392 413 0.95 8 23 0.021 2.4 10.2 0.7 2 23 425 447 424 447 0.94 9 23 0.00036 0.041 15.8 0.4 2 23 462 483 461 483 0.97 10 23 6.5e-07 7.3e-05 24.5 2.8 1 23 489 511 489 511 0.98 11 23 0.015 1.7 10.7 1.9 1 23 654 678 654 678 0.96 12 23 1.9 2.1e+02 4.1 0.4 3 23 717 738 716 738 0.93 13 23 0.0022 0.25 13.3 3.6 1 23 748 771 748 771 0.96 14 23 0.42 48 6.2 5.1 1 20 778 797 778 800 0.93 15 23 0.016 1.8 10.6 0.3 3 20 828 845 826 847 0.92 16 23 0.0033 0.37 12.8 4.3 1 23 900 923 900 923 0.97 17 23 0.018 2 10.5 1.0 1 23 960 983 960 983 0.97 18 23 0.067 7.5 8.7 6.2 1 23 1015 1038 1015 1038 0.97 19 23 1.7e-06 0.0002 23.1 2.6 2 23 1068 1089 1067 1089 0.95 20 23 5.3e-05 0.006 18.4 0.8 1 23 1095 1117 1095 1117 0.99 21 23 6e-05 0.0067 18.3 2.4 1 23 1123 1145 1123 1145 0.97 22 23 6.8e-06 0.00077 21.2 1.7 1 23 1151 1173 1151 1173 0.99 23 23 0.033 3.8 9.6 0.9 1 22 1179 1200 1179 1203 0.90
Sequence Information
- Coding Sequence
- ATGCATACTGCTGGATTGGATTATCCAATCAATCATAAAGAATGGTTATTTGGAGATCGTTTATACTACAAACCAGTTGCTTGGAGTCTTGTTCAATGCAAATTGTGCgatgcaaaatttaaaacgacTAAACAACTTCGTCAACATTTACCAATACACAGCAATTTAGACAGTCTTCATAAAATAGAATTAAGCAGTGACTGTGTCCAACATTTGTTTGGAAATATGATTGATGTAAACATCGTCAAGGAAAGCATTCGCAAAGACATTCGCGATAAACACTGGTTCAAATACTACACtgtcttaaataaatattcttatGAAATGTCCATAAGTGATACGGAAACTGAAGATTTGGAAGAAGAAACTGCAGatctttccaaaaaatataaatgtgattTGTGCGCTAAggaattttcatttaaataccAAGCTTTCTCCCATTTAAAGGAAACTCATAGCGAAGACGAAATTTCTCTGAAGTGCAATCTTTGCAAACTAGAATTTATATCAATCAAGATGTACGAAAAACATTCCAAAACTCACTGTCGTAATAGGGATAAAGTTTTGCTTTGTGCAAATTGCCCGGCCAAGTTTGTTTGGcctgaaaatatgaaaaatcacaATTGCGCCACCAAACTTCAACTGATCCTACCGGCACCTACTACTAAAgaaaaaatgaaatgtaataTATGCTACCGCGAATTTGaggtaaaaactaaatttgaaaaGCATGTGTTAACGCACAAAGATGGAAGGCTTGCATCTGCCAAAACTATAATACGCTGTGGTCTTTGTGCACATTCATTCGAAAAGCTGCGAAATTTGCGCCAACACATGCCGTTGCATGCCGACGGCAAGACAGGAATAGACTTTAAAGGCAGCATTTACCTAAAACGCTTTGAACGTTCGAAGTCAATGGACTTCGCTTTCCTGCAACAGGAAATACAAAATGCTTATAGTAAATCACAAATCAGTCGTTTTTACCGAGCAATTGATAGGGACGGAAATGAACTGGACATTTTAGATTCGGATAGTGACTCAGACGAAAGCAATCCTAATCAGGAAATTGTAAATAAAGAATACACGTGTCAACTCTGTGATGCAGTATATAAAAGGCGTAAACTTTTATTAGCTCATCAACATGAAAAGCACAATGGTGTACCATTGCCTTTTACGTGTAAAGACTGTACTCAACAATACGTAAGTAATGATTTGCTACAGCAGCATTTGGTAAGAGATTGCTGGAATGAACACCGACGAATAGCTCAACAATGTGACTATTGTAATGCTCGTTTTATATGGCAAACCAACCTTCGGAAACATAAAGAAATTCAGcataaaaatcagaaatactCGAAACCTCAAAGAGCCAGTACTCTGAAATGTGAGTATTGTGAAAAAGTGTTCATATGGCCTAAAGATTTGGTGCGTCATAGAAAAACGCATACCGAaggaaaaaaattcacatgtcCTCATTGCGATCGCAAATTTCAGCGTAAAGACAATTTATTGACTCACATAAGAATACATTGCCCTGATGGAATTACCACTGTGTCAAATCCGAGTAAAAGTATCGACTATATTCTACCACATTTAATAAAACCACATGGTTGCAAACGCATCAAATGCATGATCTGTTTTTCAGAACACAATCGTATACGCGACTTACGATCTCATTTACGAACACATCGGTATGCTGTTAATTTCGATAAAAGAAAAGAAGTCGAAACTTTGCATGTAATATCATCACAACTCTATCCTGATGAACCGATACCTTTGTCAGAAGAGATGTTAAAGAAGCGTATTGGATTTGATATTTCAGCGGAAAATAATTTGGAACGTTTTTACTctataacaaatgaaaatggCTACGAAGTTTCTTTAGACAGTTCTGAAACGGAGAGTGATTGTGATGATAACGATACAGATGAAAAAGACGATAAATCGAAACGTATTTATAAATGCGATATATGCCCTGAATTGAGTTTTCATCGTAAATATAAACTCTTCGCTCATcaaaataatgtacatacatgGGAGGAAGCTCGCCACGTCTGTATACACTGCAATGGGCGATTTCTTTCGTCATATATGCTGCAGCTACACTACAAGGATCAatgtaaaaataccaaaaaacgtaatttttgtCGACGCTGTCCGCTACGTTTTATGTGGAAGAGTAATATGAAAGCTCACATCGTAATGGAACATGGTCACGAGATCGATGCTGATCGAGGTCATGAATGTTTTCTTTGCCGAGAAAAGTTCTTCCGCCAAAAAGAACTTAAACGACACTTGATCACAGATCATTCTGCCGACGCCGAACTGCATTATTGCCTACTTTGCCCAAAAACTTTCTTTAGTGTGGAACATCTCAATGATCACTTGAGCTGTCATCGCTTGACAACAGCGAACATCAAGTCCGTTGAGAGTATAATACATTCTACATGCTGGCCCAACGGGGAGAAATCCATTATATGCAAAATATGTGAGCTTAGCTTTGAAACAATGCACAATTTAAGGGAACATTTTTCATCTAGAAACCCACAAAACTTGTGTGCTAGTCAACATGCCTTGGCAAACTATACTGCTACTAATCAAAAGGGATTCGAGATACATTTAGAACTAGACTCTGAAACAGAAATAGAAGATGATTTGGATCAAAGCAAAGgtcataaaaatacattttatccCTATAATTGCTGCATGTGCAGCATGTCATTTAAAAGGAAATATCAAATTGCTCAACATCAGCGATCATTACATAATTACGAATTGTTAGAGTTAAAGTGTGAACGTTGTATTTTTAGGACAGTGTCACAGAAAATCTTAGATTACCATAAAGCCACGCAATGTTTCAACGCTGAAAAACAATTCGAATGTGAACAGTGCAAATTCAAATTTATGTGGCAAGAAAATCTTGAGAATCACATTTCTACGTTTCATAATGCAAAAGAGTTATGCGAAGCAAGTGATGTTATATGTATTTCGTCTTCTAATGTGCCTGTACCAGCCAATAGCAAAAACGATACCAATATTTTTGAATGTATGGACTGTCACCGTCGCTACAATCGTAAAGATCGTTATAAAGCTCATTTTAAGAAATTCCACAACAATGATTTACATCTGACAGCAGGCAAACATATTTCTAATAGAAAAGTTCGGAAACCGTCGTCACCAAAActggataaaaaatttttgtgtgcgTTTTGTGGCCACTCCTTTTCAAACAATTCAAATCTTACGATACACATGAGAAGACATACAGGAGAGAAACCATACAAGTGTGATCTATGCGAAATGGCCTTTCCACGTACATCTGATATGCAAACCCACCGACGCACACATACTGGCGAACGTCCTTTCAAATGTATTTACTGCGATAAATCATTTTCTCGTCAATACAAATTAAACGTTCACAATCGCATACACACCGGCGAACGTCCATACGAGTGTACGTTTTGCCAGAAATCATTTATACAGTCGAACGATTTGACACTACATTTACGGCGTCATACTGGTGAAAGGCCATATACATGTGACATTTGCGGTGAAGGTTTTATTTGTGCTACATCTCTTAAACAACACCGTACTTCCAAGGGCCATCAGGtagaaaaaattgatttaaaaattagcATGCAACAATTGACAAATTTCGATATGAAATTCTAA
- Protein Sequence
- MHTAGLDYPINHKEWLFGDRLYYKPVAWSLVQCKLCDAKFKTTKQLRQHLPIHSNLDSLHKIELSSDCVQHLFGNMIDVNIVKESIRKDIRDKHWFKYYTVLNKYSYEMSISDTETEDLEEETADLSKKYKCDLCAKEFSFKYQAFSHLKETHSEDEISLKCNLCKLEFISIKMYEKHSKTHCRNRDKVLLCANCPAKFVWPENMKNHNCATKLQLILPAPTTKEKMKCNICYREFEVKTKFEKHVLTHKDGRLASAKTIIRCGLCAHSFEKLRNLRQHMPLHADGKTGIDFKGSIYLKRFERSKSMDFAFLQQEIQNAYSKSQISRFYRAIDRDGNELDILDSDSDSDESNPNQEIVNKEYTCQLCDAVYKRRKLLLAHQHEKHNGVPLPFTCKDCTQQYVSNDLLQQHLVRDCWNEHRRIAQQCDYCNARFIWQTNLRKHKEIQHKNQKYSKPQRASTLKCEYCEKVFIWPKDLVRHRKTHTEGKKFTCPHCDRKFQRKDNLLTHIRIHCPDGITTVSNPSKSIDYILPHLIKPHGCKRIKCMICFSEHNRIRDLRSHLRTHRYAVNFDKRKEVETLHVISSQLYPDEPIPLSEEMLKKRIGFDISAENNLERFYSITNENGYEVSLDSSETESDCDDNDTDEKDDKSKRIYKCDICPELSFHRKYKLFAHQNNVHTWEEARHVCIHCNGRFLSSYMLQLHYKDQCKNTKKRNFCRRCPLRFMWKSNMKAHIVMEHGHEIDADRGHECFLCREKFFRQKELKRHLITDHSADAELHYCLLCPKTFFSVEHLNDHLSCHRLTTANIKSVESIIHSTCWPNGEKSIICKICELSFETMHNLREHFSSRNPQNLCASQHALANYTATNQKGFEIHLELDSETEIEDDLDQSKGHKNTFYPYNCCMCSMSFKRKYQIAQHQRSLHNYELLELKCERCIFRTVSQKILDYHKATQCFNAEKQFECEQCKFKFMWQENLENHISTFHNAKELCEASDVICISSSNVPVPANSKNDTNIFECMDCHRRYNRKDRYKAHFKKFHNNDLHLTAGKHISNRKVRKPSSPKLDKKFLCAFCGHSFSNNSNLTIHMRRHTGEKPYKCDLCEMAFPRTSDMQTHRRTHTGERPFKCIYCDKSFSRQYKLNVHNRIHTGERPYECTFCQKSFIQSNDLTLHLRRHTGERPYTCDICGEGFICATSLKQHRTSKGHQVEKIDLKISMQQLTNFDMKF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00900821;
- 90% Identity
- -
- 80% Identity
- -