Tlur016617.1
Basic Information
- Insect
- Tachina lurida
- Gene Symbol
- -
- Assembly
- GCA_944452685.1
- Location
- CALYBZ010000864.1:170335-177629[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.72 71 5.1 1.2 1 23 262 285 262 285 0.88 2 24 5.6e-06 0.00055 21.1 0.3 1 23 291 314 291 314 0.97 3 24 0.024 2.3 9.7 1.7 2 20 344 362 343 365 0.94 4 24 0.015 1.5 10.3 0.8 1 23 442 465 442 465 0.96 5 24 0.14 14 7.3 0.8 2 23 473 494 472 494 0.97 6 24 0.0005 0.049 15.0 0.8 3 23 540 560 538 560 0.97 7 24 0.076 7.4 8.2 0.7 2 20 573 591 572 594 0.94 8 24 0.00034 0.033 15.6 0.8 1 23 673 696 673 696 0.96 9 24 0.0031 0.3 12.5 0.3 1 20 703 722 703 724 0.95 10 24 0.084 8.2 8.0 0.2 2 23 736 758 735 758 0.94 11 24 0.00036 0.035 15.5 0.4 2 23 773 794 772 794 0.97 12 24 2.6e-07 2.6e-05 25.3 1.9 1 23 800 822 800 822 0.98 13 24 0.056 5.5 8.6 2.8 1 23 973 997 973 997 0.96 14 24 0.011 1.1 10.8 4.6 1 23 1067 1089 1067 1090 0.95 15 24 0.0042 0.41 12.1 1.8 1 23 1097 1119 1097 1119 0.97 16 24 0.0029 0.28 12.6 0.2 2 19 1146 1163 1145 1165 0.95 17 24 0.0033 0.32 12.4 4.3 1 23 1219 1242 1219 1242 0.97 18 24 0.014 1.3 10.5 0.6 1 23 1279 1302 1279 1302 0.97 19 24 0.067 6.5 8.3 6.2 1 23 1335 1358 1335 1358 0.97 20 24 6.1e-07 6e-05 24.2 0.8 2 23 1389 1410 1388 1410 0.95 21 24 6.4e-06 0.00063 21.0 0.4 1 23 1416 1438 1416 1438 0.99 22 24 6e-05 0.0058 17.9 2.4 1 23 1444 1466 1444 1466 0.97 23 24 3.4e-06 0.00034 21.8 2.3 1 23 1472 1494 1472 1494 0.99 24 24 0.014 1.4 10.4 0.9 1 22 1500 1521 1500 1524 0.91
Sequence Information
- Coding Sequence
- ATGGATAGCGATATAAAGACTGATTGTTTCATAAATGGAGTGCAATACAAATGCCGCACTTGCTTTGATCCTGGACGGACAGTGTACTCCCTTAGAGATGAGTGCTGCATCGCGAAAAACTGGTGTGATTTAATAAAAGATGTAGCACAATTGCAGATAAGTGAAGATGATATACTTCCAAACACCATATGCTGCAAATGCTCAGCTAAACTAAAAAGTTCCTACGATTTTATTCTTCAAGTTCATAAAACGAATGCAAAATATTCTCAGTTATTAGCCATTTGTAACGACCCTCTTCAGGACTATGTTCCTCCAACAGAGTTAGATAATTTAAATGACTGTTTAGCTGAATCTACAATAGATTTACCATTGAACCAGTATATACCAGAAATAAAGCTAGAGGAAGATTTTGCAGATTCATACAAGATTAATCTAAACAGTATTTCATCTGAAAACATAGAAACAAAATTCGAAAACCAAAGTTTAAGAAGCTCTCGAGATTCTTTAGAAAATAACGAAGATTTACAGTCAGCATCGGAAGAAATAGAAGATGGCAAGAAATTTCGGAAAACTAGAAAAACTCGTAATTTAGATTTTGATTGCAATGATAACGATTACAATAATGACTTCAGCTCATCATCTAATGAAAGCGATTATATTCCATTAAAGAAACTAAAAAAAGAAAAAGTTAAAAGTGGTACCGATGGCAGTCAACCAGTGAAAAGGAAAAAAGGTCGACAAGCTCCAGACTATTATGATAAAATAGAAAAGGTAAACGATCGATTTTTGTGTCTCATATGTGAAAAAACATTTTCCTTGAGAAAAGATTGCGGTCGGCACATAGCATCGATACACTTACGTCGAACCCCATTCCCTTGTGCAATTTGCGGACAAAGTTTTGGTCGAAAGGACAAATTACAAAGGCACGTTAAACGTATACATTCGGGTGGAGTAGTATATCCATCCAATCATAAGGAATGGCTATTTGGAGATCGTTTGTACCACAAACCAACTGCTTGGACTCTTGTGCAATGTAATTTATGCGATTCCAAATTTAAAACGACGAAAGAACTTCGTCACCATTTACCAGAACACAGTAATTTTGATTCTCTCCATAAATTAGAGTTAACCAGTGACTTTATTCAACATTTGTTCGGAAATATGATTGAATTAAACATCGTCAAAGAAAGCATTTGTAACGACATTCGCGATAAACAATGGTTTAAATACTATACTGTTTTAAATAAATACTCTTATGAAATGTCTATAAGTGACACGGAAAATGAAGATGCAGAAGAAGAAACTGCAGAGCCAACAAACAAATACAAATGTGATTTGTGTGCACAGGTATTTTCATTTAAATACCAAGCTTTTTCCCATTTAAAGGAGGCTCATAGCGAAGATGAAATTCCTCTGAAGTGTAATCTTTGTAAGCTGGAATTTATTTCAATTAATATGTATGAGCAACATTCCAAAACTCATTGTCGTAATAGGCATAAGGTTTTACTTTGTGCGCAATGTCCGGCCAAATTTGTTTGGCCAAAAAATATGAAAAATCACAATTGCGCCACCAAACTTCAACTAATCCCACCGCCACCTACTAAGGAACAAATGGCGTGTAATATATGCGATCGTAAATTTGAGGTGAAGACGAAATTTGAAAAACATTTAGAAACACATAAAGATGGCAGACTTGTATCCTCAAAAACTATAATTCGTTGCGGTCTTTGTGCACATTCTTTCGAAAAACTACGAAATTTGCGCCAACACATGCCATTGCATGCCGATGGCAAGACTGGCATTGATTTTAAAGGCAGTATATATGTGAAACGTTTTGAACGTTCGAAATCCATTGATTTTGCTCTACTGCAACAAGAAATACAAAATGCTTACAGAAAATCTCAAATAAGTCGTTTTTATAGAGCTATTGATAGGGATGGAAATGAAATGGATATTTTAGACTCGGATAGCGACGCAGAAGGAGATAATCATAATGAGGCAATTGTCGAAAAGGAATATAGTTGTCAACTGTGCGGTGCTGCTTATAAAAGGCGAAAACTTTTACTAAACCATCAACGCGATAAGCACATCGGTGTACCACTTCCTTTTACATGTAAAGATTGTACTCAACAATATGTAAGTAATGATTTGTTACAGCAACACTTGGTAAGAGATTGTTGGAATGAACACCGACGAATTGCACAACAATGTGACTATTGTAATGCACGGTTTATATGGCCAAATAATCTACTAAAGCACAAAGAAATTCAGCATAAAAATCAGAAACACCCAAAACCTCAAAGAGCCAGTACTCTTAAATGTGAATACTGTGAAAAGGTATTCATATGGCCTAAAGATTTGGTGCGTCATCGGAAAACGCACACTGAAGGAAAAAAATTCACATGTCCGCACTGCGATCGTAAATTTCAGCGTAAAGACAATTTGCTGGCTCACATAAGAATACATTGTCCTGATGGCATACCAACGATATTAAATCCGGGCAAAAGTATCGATTACATTCTACCGCATTTAATAAAACCACATGGATGCAAACGCATCAAATGTATGATTTGCTTTTCTGAACACAATCGCGTGCGCGACTTAAGATTTCATTTGCGAACACATCGTTATACAGTTAGTTTCGACAAACGAAAAGAAATTGAAACTTTGGATATTATATCATCTCAACTCTATCCTGATGAACTGCTGCCTTTACCAGAGGAGATTTTAAAGAAGCGTATTAATGTTGATATTGCAGCGGAAAATAACTTGGAACGTTTTTATTCTATAACAAATGAAAATGGCTATGAAGTTTCTTTAGACAGTTCTGAAACGGAAAGTGATTCAGATGATAACGACAGAGAAGAAAAAGAAAAAGAAGACGAAGAAGAACACAACGACAAATCGAAACGTATTTACAAATGCGATTTGTGCCCTCAATTAAGTTTTAATCGTAAATATAAACTTTTCGCTCATCACAACAATGAACATACATGGGAGGAAGCTCGACACGTTTGTATATATTGCAACGCTCGATTTCTGTCCTCATACATGCTGCAGCTGCATTATAAGGACCAGTGTAAAAATAGCAAGAAACGTCATTTTTGCCGCCGCTGCCCGTTGCGTTTTATGTGGAAAAATAATATGAAGGATCATATCGTAATGGAACATGGTCACGAAATCGATTCAAATCGGGGTCATGAATGCTTTCTTTGTCAAGAAAAGTTCTTTCCTCAGAAAGAGCTCAAGCGTCATTTGATCACACATCACTCTGCCGATGCCGAACTTCATTATTGCCTACTTTGTCCGAAAACCTTCTTTAGTGTGGAACAGCTCAATGATCATTTGAGTCGTCATCGATTGACTACCTCAGACGTCAAGACTGTTGAAAGTATAATACACTCCACATGCTGGCCCAACGGAGAAAAGATGATTAAATGCAAAATATGTGAAACCACGTTTGAAACATTGGCAAATCTAAGAGATCATTTTTCACCAACAAATCCACAAAACGTATGTGCCAATCAGCATTCCTTGGTAAATTATTCAGCTACTGACCAAAAGGGATTCGAGCTGCATATGGAACTCGATTCTGAAACCGAAATAGAAGACGATGTGGAACAGAATAAAGGTCATAAAAATTCTTTGTATCCCTATAATTGCTGCATGTGTAGTATGTCGTTTAAAAGAAAATACCAAATCGCTCAACATCAACGATCATTGCATAATTACGAAATGCTGGCTTTAAAGTGTGAACGTTGTATTTTTAGAACAGTCTCTCAGaaagtactagattatcataaattcacgcagtgtttcaacgcggagaaacaattcgaatgcgaacaatgcaaatttaaattcatgtggcaagaaaatcttgagaatcacatttccacgctgcatagtccaaaagagtgtggTGCTAAGCCAAGTGATGTTATTTGCATAGCCTCTTCTAATGAGCCCATACCCACCAATAGCAAAAGTGATACCAATATTTTTGAATGCATGGACTGCCATCGCCGTTACAATCGTAAAGATCGATATAAAGCTCATTTTAAGAAATTCCACAGCAATGATTTGCACTTAACATCTGAAAAGTGCATTTCTCATAGAAAAGTTCGGAAGCAGACTGccacatccagaatggaaaagaaattcttgtgtgccttttgcggactatccttttcaaacaattccaaccttacggtacacatgagaagacatacgggagagaaaccatttaagtgtgatctatgtgaaatggcattcccacgtacctccgatttgcaagcccaccggcgtacacacactggcgaacgacctttcaaatgtatttattgcgataaatcattttcgcgacaatacaaattaaatgtacataatcgcatacacactggtgaacgtccttacgagtgttcgttttgtcagaaatcatttacacaatcgaacgatttgacactgcatttaaggcgtcatacgggtgaaaggccttacacatgtgacatttgcggtgaaggctttatatgtgccacatctctcaaacagcatcgcaattctaaaggtcatcaggaagtgaaagtggatttcaaagagtgtgtgcagcaattgacTCATTACGATCTAAAATTCTAA
- Protein Sequence
- MDSDIKTDCFINGVQYKCRTCFDPGRTVYSLRDECCIAKNWCDLIKDVAQLQISEDDILPNTICCKCSAKLKSSYDFILQVHKTNAKYSQLLAICNDPLQDYVPPTELDNLNDCLAESTIDLPLNQYIPEIKLEEDFADSYKINLNSISSENIETKFENQSLRSSRDSLENNEDLQSASEEIEDGKKFRKTRKTRNLDFDCNDNDYNNDFSSSSNESDYIPLKKLKKEKVKSGTDGSQPVKRKKGRQAPDYYDKIEKVNDRFLCLICEKTFSLRKDCGRHIASIHLRRTPFPCAICGQSFGRKDKLQRHVKRIHSGGVVYPSNHKEWLFGDRLYHKPTAWTLVQCNLCDSKFKTTKELRHHLPEHSNFDSLHKLELTSDFIQHLFGNMIELNIVKESICNDIRDKQWFKYYTVLNKYSYEMSISDTENEDAEEETAEPTNKYKCDLCAQVFSFKYQAFSHLKEAHSEDEIPLKCNLCKLEFISINMYEQHSKTHCRNRHKVLLCAQCPAKFVWPKNMKNHNCATKLQLIPPPPTKEQMACNICDRKFEVKTKFEKHLETHKDGRLVSSKTIIRCGLCAHSFEKLRNLRQHMPLHADGKTGIDFKGSIYVKRFERSKSIDFALLQQEIQNAYRKSQISRFYRAIDRDGNEMDILDSDSDAEGDNHNEAIVEKEYSCQLCGAAYKRRKLLLNHQRDKHIGVPLPFTCKDCTQQYVSNDLLQQHLVRDCWNEHRRIAQQCDYCNARFIWPNNLLKHKEIQHKNQKHPKPQRASTLKCEYCEKVFIWPKDLVRHRKTHTEGKKFTCPHCDRKFQRKDNLLAHIRIHCPDGIPTILNPGKSIDYILPHLIKPHGCKRIKCMICFSEHNRVRDLRFHLRTHRYTVSFDKRKEIETLDIISSQLYPDELLPLPEEILKKRINVDIAAENNLERFYSITNENGYEVSLDSSETESDSDDNDREEKEKEDEEEHNDKSKRIYKCDLCPQLSFNRKYKLFAHHNNEHTWEEARHVCIYCNARFLSSYMLQLHYKDQCKNSKKRHFCRRCPLRFMWKNNMKDHIVMEHGHEIDSNRGHECFLCQEKFFPQKELKRHLITHHSADAELHYCLLCPKTFFSVEQLNDHLSRHRLTTSDVKTVESIIHSTCWPNGEKMIKCKICETTFETLANLRDHFSPTNPQNVCANQHSLVNYSATDQKGFELHMELDSETEIEDDVEQNKGHKNSLYPYNCCMCSMSFKRKYQIAQHQRSLHNYEMLALKCERCIFRTVSQKVLDYHKFTQCFNAEKQFECEQCKFKFMWQENLENHISTLHSPKECGAKPSDVICIASSNEPIPTNSKSDTNIFECMDCHRRYNRKDRYKAHFKKFHSNDLHLTSEKCISHRKVRKQTATSRMEKKFLCAFCGLSFSNNSNLTVHMRRHTGEKPFKCDLCEMAFPRTSDLQAHRRTHTGERPFKCIYCDKSFSRQYKLNVHNRIHTGERPYECSFCQKSFTQSNDLTLHLRRHTGERPYTCDICGEGFICATSLKQHRNSKGHQEVKVDFKECVQQLTHYDLKF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00900821;
- 90% Identity
- iTF_01398750; iTF_01074689;
- 80% Identity
- -