Basic Information

Insect: Gymnocheta viridis
Gene Symbol: -
Assembly: GCA_956483585.1
Location: OY101441.1:3197945-3206038[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 24 0.71 76 5.2 1.5 1 23 263 286 263 286 0.88

2 24 3.3e-05 0.0035 18.9 1.1 1 23 292 315 292 315 0.97

3 24 0.00071 0.076 14.7 1.7 2 23 345 366 344 366 0.97

4 24 0.0037 0.4 12.4 1.2 1 23 443 466 443 466 0.96

5 24 0.26 27 6.6 1.0 2 23 474 495 473 495 0.96

6 24 0.00082 0.088 14.5 3.1 2 23 540 561 539 561 0.97

7 24 0.0013 0.14 13.8 0.8 1 23 640 663 640 663 0.97

8 24 0.00066 0.07 14.8 0.3 1 21 670 690 670 691 0.95

9 24 0.09 9.6 8.0 0.2 2 23 703 725 702 725 0.94

10 24 0.00039 0.042 15.5 0.4 2 23 740 761 739 761 0.97

11 24 2.8e-07 3e-05 25.4 1.9 1 23 767 789 767 789 0.98

12 24 0.0082 0.87 11.3 1.3 1 23 937 961 937 961 0.96

13 24 1.6 1.7e+02 4.1 1.3 1 23 998 1021 998 1021 0.92

14 24 0.024 2.5 9.9 4.2 1 23 1031 1053 1031 1054 0.95

15 24 0.0095 1 11.1 3.6 1 23 1061 1083 1061 1083 0.97

16 24 0.0014 0.15 13.8 0.1 2 19 1110 1127 1109 1129 0.95

17 24 0.0036 0.38 12.5 4.3 1 23 1183 1206 1183 1206 0.97

18 24 0.032 3.4 9.5 0.8 1 23 1243 1266 1243 1266 0.97

19 24 0.072 7.6 8.4 6.2 1 23 1298 1321 1298 1321 0.97

20 24 6.6e-07 7e-05 24.2 0.8 2 23 1351 1372 1350 1372 0.95

21 24 6.9e-06 0.00074 21.0 0.4 1 23 1378 1400 1378 1400 0.99

22 24 6.4e-05 0.0068 18.0 2.4 1 23 1406 1428 1406 1428 0.97

23 24 7.4e-06 0.00078 20.9 1.7 1 23 1434 1456 1434 1456 0.99

24 24 0.028 3 9.6 0.9 1 22 1462 1483 1462 1486 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	24	0.71	76	5.2	1.5	1	23	263	286	263	286	0.88
2	24	3.3e-05	0.0035	18.9	1.1	1	23	292	315	292	315	0.97
3	24	0.00071	0.076	14.7	1.7	2	23	345	366	344	366	0.97
4	24	0.0037	0.4	12.4	1.2	1	23	443	466	443	466	0.96
5	24	0.26	27	6.6	1.0	2	23	474	495	473	495	0.96
6	24	0.00082	0.088	14.5	3.1	2	23	540	561	539	561	0.97
7	24	0.0013	0.14	13.8	0.8	1	23	640	663	640	663	0.97
8	24	0.00066	0.07	14.8	0.3	1	21	670	690	670	691	0.95
9	24	0.09	9.6	8.0	0.2	2	23	703	725	702	725	0.94
10	24	0.00039	0.042	15.5	0.4	2	23	740	761	739	761	0.97
11	24	2.8e-07	3e-05	25.4	1.9	1	23	767	789	767	789	0.98
12	24	0.0082	0.87	11.3	1.3	1	23	937	961	937	961	0.96
13	24	1.6	1.7e+02	4.1	1.3	1	23	998	1021	998	1021	0.92
14	24	0.024	2.5	9.9	4.2	1	23	1031	1053	1031	1054	0.95
15	24	0.0095	1	11.1	3.6	1	23	1061	1083	1061	1083	0.97
16	24	0.0014	0.15	13.8	0.1	2	19	1110	1127	1109	1129	0.95
17	24	0.0036	0.38	12.5	4.3	1	23	1183	1206	1183	1206	0.97
18	24	0.032	3.4	9.5	0.8	1	23	1243	1266	1243	1266	0.97
19	24	0.072	7.6	8.4	6.2	1	23	1298	1321	1298	1321	0.97
20	24	6.6e-07	7e-05	24.2	0.8	2	23	1351	1372	1350	1372	0.95
21	24	6.9e-06	0.00074	21.0	0.4	1	23	1378	1400	1378	1400	0.99
22	24	6.4e-05	0.0068	18.0	2.4	1	23	1406	1428	1406	1428	0.97
23	24	7.4e-06	0.00078	20.9	1.7	1	23	1434	1456	1434	1456	0.99
24	24	0.028	3	9.6	0.9	1	22	1462	1483	1462	1486	0.90

Sequence Information

Coding Sequence: ATGACCGGCGAAATAAAGATAGAATGTTTAATAAATGGAGTACATTACAAATGCCGTACTTGCTTTGATCCTGGACGAACCGTCTACTCTCTGAAAGATGAGTGTAGCAATAACAAAACTTATTGTGATTTGTTAAAGGATGTTACTCAGTTACAAACGGCAGACAATGATTTACTTCCAAATACAATGTGCTGCAAATGTTCGGCTAAACTTAAAAGTTCCTACGATTTTATTCTTCAGGTTTATGATGTGAATACAAAATATTCCCAATTGTTATCGATTTGTGATGATCCACTACAAAGTGAGATTTCTACTGAGTTGGAGAATTTAAACGATTGCTTAGCTGAGTCTACAATTGATTTACCACTAAACCAATATATACCAGAAATTAAGCTAGAGGACGACTTTTCAGATCCTTAtaagattaatttaaataacattcaaACAGAGGACAAAGAAGCGAAATTGGAAAACGATGGTTTACGAGAATCGCAAGGTTTTTTAGGAGATAACGAATATTTTATGTCATCAATAAGAGAgcgcaaaaaatgtttaaaatctaGATCTGTTAATGAAGGTAGAATTCAAAACCAAGAAGATGATGACAAAGATTACAGAAATGAATCCAGcTCCTCATCTAATGAAAGCGATTATATACCATTAAAGAGACTAAAAAAAGATAAAGTAAGCAGAATTAGCAGTAGAAGTAGCAGtcAGCCACTTAAACGGAAAAAGGGTCGGCAAGCTCCAGATTATtatgataaaatagaaaaagtgaacgATCGTTTTTTATGTCTTATATGTCAAAAAACATTTTCGTTACGAAAAGATTGCGGTCGACATATAGCATCAATACACTTGCGCCGGACTCCATTTCCATGTCAAATTTGCAGCCAAAGTTTTGGTCGTAAGGATAAGTTACAAAGACATGTTAAGCGTATGCACTCAGGTGGAGTAGTATATCCACCCAATCATAAGGAATGGTTATTTGGAGACCGTTTATACTATAAACCAGCTGCTTGGAGTCTTGTGCAGTGTAAATTGTgcgatataaaatataaaacaactaAAGAACTTCGacaacatttacaaaaacacTGTAATTTAGACACTCTCCATAAAATAGAATTGAACAGTGACTGTGTCCAGTATTTGTTTGGAAATATGATTGATTTGAACATTGTCAAGGAAAGCATTTGCAAAGATATTCGCGAGAAACATTGGTTTAAATACTACactgtattaaataaatactcttATGAAATGTCCATTAGTGATACGGAAATTGAGGATTTGGAAGAAGAAACTGTAGAGCTGGCAAGCAAATATAAGTGTGATTTGTGTGCTAAggagttttcatttaaatatcaagttttttcacatttaaaagAGGCTCATAGCGAAGatgaaatttctttgaaatgtaACCTTTGCAAGCTGgaatttatttcaatcaaaatGTATGAACAACATTCCAAATCTCATTGTCGTAATAGGCATAAAGTTTTACTTTGTGCACATTGCCCGGCTAAGTTTGTTTGGcctgaaaatatgaaaaatcatAATTGCGCCACGAAACTTCAGCTGATTCCATCGACACCTACTAAAGAACAGATGACGTGTCACATATGCGACCGTAAATTTGAAGTAAAGACTAAATTTGAAAAGCATTTGGAGACGCATAAAGATGGAAGGACTGGCATTGACTTTAAAGGCAGTATTTATGTAAAACGTTTTGAACGTTCGAAATCAATTGACTATGCTCTACTGCAACAGGAAATACAAAACGCTTATAAGAAATCACAAATTAGTCGATTTTATAGAGCCATTGATAGGGACGGAAATGAGATGGATATTTTAGATTCGGATAGTGACGCAGAAGAAACCAAACCTAATGAGGAAATTCTAGAAAAAGAATACATGTGCCAACTCTGTGAAGCAGTATATAAAAGacgaaaacttttattaaatcatcAACGGGAACAGCACAATGGTGTACCACTGCCTTTTACGTGCAAAGACTGTACTCAACAATATGTAAGTAATGATTTGCTACAGCAACATATGATAAGGGATTGCTGGAATGAACACCGAAGAATAGCTCAACAATGTGACTATTGCAATGCACGCTTTATATGGCCAAACAATCTACTCAAACACAAGGAGATTCAGcataaaaatcataaacacCCAAAACCTCAAAGAGCCAGTACTCTCAAATGTGAGTATTGCGAAAAGGTATTCATATGGCCTAAAGATTTGGTGCGTCATAGAAAAACGCATACCGAAGGAAAAAAATTCACATGCCCACATTGCGATCGTAAATTTCAGCGGAAAGACAATTTATTGGCACACATAAGAATACATTGTCCGGATGGCATTCCCACTGTGTCAAATCCGGGTAAAAGTATTGACTATATTCTACCACATTTAACAAAACCACATGGATGCAAACGCGTCAAATGCATGATCTGTTTTTCAGAACACAATCGTGTACGCGACTTAAGATCTCATTTACGGACACATCGGTATACTGTTAATTtcgataaaagaaaagaaattgaaacTTTAGACGTAATATCATCTCAACTCTATCCCGATGAACCACTACCTTTGGCAGAAGAAATGTTAAAGAAGCGTATTGGTTTCGATATTGCAGCGGTAAATAATTTGGAACGATTTTACTCTATAACAAATGAAAATGGCTACGAAGTTTCCTTAGATAGTTCTGAAACGGAAAGTGATTCTGATGAGAATGACAAAGatgatgaagaagaggaaggaGAGGAAGATAAATCGAAACGTATTTATAAATGCGATTTATGTCCTCAATTGAGTTTTAATCGCAAATATAAACTTTTCGCTCATCAAAACAATGAACATACATGGGAAGAAGCTCGACACGTTTGTATACACTGCAATGGACGATTTCTTTCATCATATATGCTGCAGCTGCACTATAAGGATCAAtgtaaaaatgccaaaaaacgTCATTTTTGTCGTCGCTGTCCGCTCCGTTTCATGTGGAAGAGCAACATGAAGGCTCACATCGTAATGGAACATGGTCACGAAATCGACTCAAATCGAGGTCATGAATGTTTTCTTTGTCAAGAAAAGTTCTTTCCCCAGAAGGAACTTCAACGTCACTTGGTCACACATCACTCGGCCGATGCCGAACTTCATTACTGCTTACTTTGCCCAAAAACATTCTTTAGTGTGGAACATCTCAACGACCATTTGAGTCGCCACCGATTAACCAGTGCGGACGTCAAGGCCGTTGAAGGTATAATACATTCCACATGTTGGCCAAACGgagaaaaatcaattaaatgcaaaatatgtgACATTACCTTTGAAACATTGGCCAATCTAAGGGAACATTTTTCTCCCAGAAACCCACAAAACTTGTGTGCCAGTAAACATTCCTTTAGAAATTACTCAGCTACTAATCAAAAAGGATTCGAACTACATTTAGAACTTGATTCAGAAACAGAAATAGAAGATGATTCGGAACAAAGCAAAgggcataaaaatatttattatcccTATAATTGCTGCATGTGTAGTATGTCGTTTAAAAGGAAATACCAAATTGCTCAACATCAACGATCGTTACATAATTACGAATTGCTGGCGTTAAAGTGTGAACGTTGTATCTTTAGGACAGTCTCAcagaAAGTCCTAGATTATCATAGAGCCACACAGTGTTTCAACGCTGAAAAGCATTTCGAATGTGAACAGtgcaaattcaaatttatgtgGCAAGAAAATCTCGAGAATCACATTTCTATGTTTCATAGCGCAACAGAATTATCCAACGCAACAGATCTTACTTACATTTCATCTTCTAATAAGCCTGTACCCACTAATAGCAAAAacgatacaaatatttttgaatgtatGGACTGTCACCGTCGTTACAATCGTAAAGATCGATATAAAgctcattttaagaaattccaCAACAATGATTTGCAGCTGACGTCAGACAAGAATATTTCTAATAGAAAAGTTCGGAAACAGTCCGCACCAAAAttggaaaagaaatttttgtgtgCTTTTTGTGGTCTctccttttcaaataattcaaatcTTACAGTACACATGAGGAGGCATACGGGAGAGAAACCTTTCAAGTGTGATCTTTGTGAAATGGCCTTTCCACGTACTTCTGATTTGCAAGCCCACCGACGCACACATACTGGTGAACGTCCTTTCAAGTGTATTTACTGCGATAAGTCATTTTCGCGACAATACAAATTAAACGTTCATAATCGCATACACACTGGTGAACGTCCCTACGAGTGTACGTTTTGTCAGAAATCATTTATACAGTCGAACGATTTGACACTACATTTACGGCGTCACACTGGTGAAAGGCCTTATACGTGTGATATTTGCGGTGAAGGTTTTATATGTGCCACATCTCTTAAACAACATCGTAGTTCTAAAGGGCATCAGgaagaaaaaaatgatttaaaaatgtgtGTGCAACAGTTGACACACTTCGATGTAAAATTCTAA
Protein Sequence: MTGEIKIECLINGVHYKCRTCFDPGRTVYSLKDECSNNKTYCDLLKDVTQLQTADNDLLPNTMCCKCSAKLKSSYDFILQVYDVNTKYSQLLSICDDPLQSEISTELENLNDCLAESTIDLPLNQYIPEIKLEDDFSDPYKINLNNIQTEDKEAKLENDGLRESQGFLGDNEYFMSSIRERKKCLKSRSVNEGRIQNQEDDDKDYRNESSSSSNESDYIPLKRLKKDKVSRISSRSSSQPLKRKKGRQAPDYYDKIEKVNDRFLCLICQKTFSLRKDCGRHIASIHLRRTPFPCQICSQSFGRKDKLQRHVKRMHSGGVVYPPNHKEWLFGDRLYYKPAAWSLVQCKLCDIKYKTTKELRQHLQKHCNLDTLHKIELNSDCVQYLFGNMIDLNIVKESICKDIREKHWFKYYTVLNKYSYEMSISDTEIEDLEEETVELASKYKCDLCAKEFSFKYQVFSHLKEAHSEDEISLKCNLCKLEFISIKMYEQHSKSHCRNRHKVLLCAHCPAKFVWPENMKNHNCATKLQLIPSTPTKEQMTCHICDRKFEVKTKFEKHLETHKDGRTGIDFKGSIYVKRFERSKSIDYALLQQEIQNAYKKSQISRFYRAIDRDGNEMDILDSDSDAEETKPNEEILEKEYMCQLCEAVYKRRKLLLNHQREQHNGVPLPFTCKDCTQQYVSNDLLQQHMIRDCWNEHRRIAQQCDYCNARFIWPNNLLKHKEIQHKNHKHPKPQRASTLKCEYCEKVFIWPKDLVRHRKTHTEGKKFTCPHCDRKFQRKDNLLAHIRIHCPDGIPTVSNPGKSIDYILPHLTKPHGCKRVKCMICFSEHNRVRDLRSHLRTHRYTVNFDKRKEIETLDVISSQLYPDEPLPLAEEMLKKRIGFDIAAVNNLERFYSITNENGYEVSLDSSETESDSDENDKDDEEEEGEEDKSKRIYKCDLCPQLSFNRKYKLFAHQNNEHTWEEARHVCIHCNGRFLSSYMLQLHYKDQCKNAKKRHFCRRCPLRFMWKSNMKAHIVMEHGHEIDSNRGHECFLCQEKFFPQKELQRHLVTHHSADAELHYCLLCPKTFFSVEHLNDHLSRHRLTSADVKAVEGIIHSTCWPNGEKSIKCKICDITFETLANLREHFSPRNPQNLCASKHSFRNYSATNQKGFELHLELDSETEIEDDSEQSKGHKNIYYPYNCCMCSMSFKRKYQIAQHQRSLHNYELLALKCERCIFRTVSQKVLDYHRATQCFNAEKHFECEQCKFKFMWQENLENHISMFHSATELSNATDLTYISSSNKPVPTNSKNDTNIFECMDCHRRYNRKDRYKAHFKKFHNNDLQLTSDKNISNRKVRKQSAPKLEKKFLCAFCGLSFSNNSNLTVHMRRHTGEKPFKCDLCEMAFPRTSDLQAHRRTHTGERPFKCIYCDKSFSRQYKLNVHNRIHTGERPYECTFCQKSFIQSNDLTLHLRRHTGERPYTCDICGEGFICATSLKQHRSSKGHQEEKNDLKMCVQQLTHFDVKF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00900821;
90% Identity: -
80% Identity: -