Gang025729.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Germaria angustata
Gene Symbol
-
Assembly
GCA_963681545.1
Location
OY813001.1:14271761-14278674[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 26 0.67 84 5.2 1.5 1 23 268 291 268 291 0.88
2 26 2.9e-07 3.7e-05 25.2 0.5 1 23 297 320 297 320 0.97
3 26 0.043 5.4 8.9 0.8 2 20 350 368 349 371 0.92
4 26 0.21 27 6.7 0.9 1 23 448 471 448 471 0.96
5 26 0.28 35 6.4 1.2 2 23 479 500 478 500 0.96
6 26 0.00077 0.097 14.4 3.1 2 23 545 566 544 566 0.97
7 26 0.038 4.8 9.1 0.9 2 20 579 597 578 600 0.94
8 26 0.0008 0.1 14.4 2.3 1 23 679 702 679 702 0.97
9 26 0.0091 1.1 11.1 0.3 1 20 709 728 709 730 0.95
10 26 0.084 11 8.0 0.2 2 23 742 764 741 764 0.94
11 26 0.00036 0.046 15.5 0.4 2 23 779 800 778 800 0.97
12 26 2.6e-07 3.3e-05 25.3 1.9 1 23 806 828 806 828 0.98
13 26 9.2 1.2e+03 1.6 2.0 2 23 860 881 859 881 0.80
14 26 0.091 11 7.9 1.1 1 23 971 995 971 995 0.96
15 26 0.67 85 5.2 1.3 1 23 1032 1055 1032 1055 0.94
16 26 0.011 1.4 10.8 4.6 1 23 1065 1087 1065 1088 0.95
17 26 0.0084 1.1 11.2 3.6 1 23 1095 1117 1095 1117 0.97
18 26 0.00075 0.095 14.5 0.2 2 20 1144 1162 1143 1164 0.93
19 26 0.0033 0.42 12.4 4.3 1 23 1217 1240 1217 1240 0.97
20 26 0.0086 1.1 11.1 0.7 1 23 1277 1300 1277 1300 0.97
21 26 0.067 8.4 8.3 6.2 1 23 1332 1355 1332 1355 0.97
22 26 6.1e-07 7.7e-05 24.2 0.8 2 23 1384 1405 1383 1405 0.95
23 26 6.4e-06 0.00081 21.0 0.4 1 23 1411 1433 1411 1433 0.99
24 26 6e-05 0.0075 17.9 2.4 1 23 1439 1461 1439 1461 0.97
25 26 6.9e-06 0.00086 20.9 1.7 1 23 1467 1489 1467 1489 0.99
26 26 0.022 2.8 9.8 0.6 1 22 1495 1516 1495 1519 0.90

Sequence Information

Coding Sequence
ATGAGCGGCGATATAAAGACTGAATGTTTCATAAATGGAATACAATACAAATGTCGTACATGCTTTGACCCTGGGCGAACGGTCTACTCTCTTAGAGATGAGTGCAGCAAGGCAAAAACTTGGTGTGATTTGCTAAAGGATGTTGCTCAGTTACAAATAAACGACGATGACTTACTGCCAAATACATTGTGCTGCAAATGTTCGGTCAAACTTAAAAGTTCCTACGATTTTATACTTCAGATTCATGATGTGAACACAAAATATTCTCAATTATTAGCAATTTGCAATGATCCACTACAGGAAGGAGCTACAAATGAGCTTGATAGTTTAAACGATTGCTTGGCTGAGTCGACAATTGATTTACCATTGAACCAGTATATGCCAGAAATTAAACTAGAGGAAGATTTTTCTGAACCTTATAAGGTTAATTCAAGTAACAGTCAATCGGCAGATGGAGAAGAAAAATTGGAAAGTGAAGGCTTGCAAGAATCTCAAGAAGATTCTCTATTGGATAACGAAGATTTTAAATCATCATGTGAAGAAACAGGGGGccgtaagaaatattttaaaactagATGTGCTGTTGAACGAAAAATACAAAACTCGGATGACGATCACAACGACAACGATCACAGGAATGAATCCAGCTCATCTTCCAATGAAAGCGATTATATTCCACAAAAGAGACTCAAAAAAAGAAAGGTCTGCAGAAGTAGTACTAGTAGCAGTCAGCCAGTTAAACGGAAAAAAGGTCGACAAGCGCCAGATTATTATGATAAAATAGAAAAGTTCAATGATCGTTTTTTATGTCTTATATGTCAAAAAACGTTTTCGTTGCGAAAGGATTGTGGTCGACATATAGCGTCGATACACTTGCGTCGAACGCCATTTCCTTGCGAAATTTGCGGACAAAGTTTTGGCCGCAAGGACAAGTTACAACGGCATATTAGACGTATGCATTCGGGCGGAGTAGTATATCCACCTAATCATAAGGAATGGTTATTTGGAGATCGTTTATACTACAAGCCAGCGGCTTGGAATCTCGTACAATGTAAATTATGTGATTCAAAATTTGAAACCACTAAACAACTTCGTGATCACATACCAAAGCACAGTGACTTGGACACTCTCCATAAAATAGAATTAACCAGTGACTGTGTCCAacatttatttggaaatatGCTTGATTTAAACGCTGTTAAGGAAAGTATATGCAAAGACATTCGCgataaaaattggtttaaataCTACAGTGTCTTAAATAAATACTCATATGAAATGTCGATTAGTGATACGGAGGCAGAAGATTTAGAAGAACAAAGTGCTGATCGTACTAAAAAATACAAGTGTGATTTGTGTGCTGGGGAGTTTTCTTTTAAGTACCAAGTTTTTTCACACTTAAAGGAATCTCATGGTGAGGATGAAATTTCTTTGAAGTGTAACCTTTGCAAgctagaatttatttcaataaaaatgtaccaGCAACATTCCACAACTCATTGTCGTAATAAACACAAAGTTTTGCTTTGTGCACATTGCCCTTCCAAGTTCGTTTGgccagaaaatatgaaaaatcacAACTGCGCCACCAAACTTCAACTGATCCTACCGACGCCTACTAAAGAACAAATGACTTGCCATATATGCGATCGTAAGTTTGAGGTAAAGACtaaatttgaaaagcatttggaAACACATAAAGATGGACGAATTGTATCGGCTAAAACTATAATACGATGCGGTCTTTGTGCACATTCTTTCGAAAAGCTACGAAATTTGCGGAAACACATGCCGTTGCACGCCGACGGGAAGACTGGCATTGACTTTAAAGGCAGTATTTACGTAAAACGTTTTGAACGTTCGAAATCAATTGACTTTGCGTTACTGCAACAGGAAATACAAAATGCCTACAGGAAATCTCAAATTAGTCGGTTTTATCGAGCAATTGATAGGGACGGAAACGAAATGGACATTTTAGATTCGGATAGTGATGAAGAAGAAGCTAACCCAAACGAAGGAATTGTGGAGAAGCAGTACATGTGTGAACTTTGCGATATGGTGTGTAAAAGACGAAAACTATTACTAAACCATCAACGCGAACAGCACAATGGTGTACCCCTGCCATTTACTTGTAATGACTGTACTCAACAATATGTGAGCTACGATTTGTTACAGCAACATTTGGTAAGAGACTGCTGGAATGAACACCGACGGATAGCACAACAATGTGACTATTGTAATGCTCGCTTTATATGGCCGAACAATCTTCTGAAACATAAAGAAATTCAGCATAAAAATCAGAAACACCCAAAACCTCAAAGGGCCAGCACTCTTAAATGTGAATATTGCGAAAAGGTATTCATATGGCCCAAAGATTTGGTGCGTCATAGAAAAACACATACTGAAGGGAAAAAATTCACATGCCCACATTGCGATCGTAAATTTCAGCGTAAAGATAATTTACTTGCTCATATAAGAATACATTGTGCAGATGGTATTCCCACTGTGTCAAATCCGGGAAAAAGTATCGACTACATTCTGCCACATTTAATAAAGCCAAATGGATGTAAGCGCATCAAATGCATGATCTGTTATTCAGAGCACAATCGAGTACGTGACTTAAGATCTCATTTAAGAACGCACCGCTATACTGTTAATTtcgataaaagaaaagaaatcgaAACTTTAGATGTGATATCATCTCAACTCTATCCCGATGAACCACTACCTTTGCCCgaagagatattaaaaaaacgtaTTGGTTTTGATATTGCAGCGGAAAATAATTTGGAACGTTTCTACTCTATAACAAATGAGAATGGCTACGAAGTTTCTTTAGACAGTTCTGAAACGGAAAGTGATTCTGACGACAACGATAAAGATGAAAAAGAGGATAAGTCGAGACGCATTTATAAATGCGATCTATGTCCTCAATTAAGTTTCAATcgtaaatataaagtttttgctCATCAGAACAATGAACACACATGGGAGGAAGCTCGCCACGTTTGCATTCACTGTAATGGGCGATTTCTTTCCTCATATATGCTGCAGCTACACTATAAAGATCaatgtaaaaatacaaaaaaacgtCATTTCTGTCGTCGCTGTCCCCTGCGTTTTATGTGGAAAAGTAATATGAAGGCACACATCATAATGGAACATGGTCACGAaatCGATTCGAATCGAGGTCATGAATGTTTTCTTTGCCAAGAAAAGTTTTTCCCCCAAAAGGAACTTAAACGTCACTTGATCACACATCACTCCGCAGATGCCGAACTTCATTACTGCTTACTTTGCCCTAAAACATTCTTTAGTGTAGAACATCTCAATGAGCATTTGAGTCGTCATCGATTGACAACAGCAGACGTTAAGACCGTTGAAAGTATAATACATTCCACATGCTGGCCAAATGGAGAAAAAGCgattaaatgcaaaatatgtgaTCTTACCTTTGAAACAATGTCAAATCTAAGGGAACATTTTTCATCCAAAAACTCGCAAAATATGTGTGCACGCCAACATTCTTTGGCGAATTACTCAGCTACTAATCAAAAGGGATTTGAACTACATTTGGAGCTTGATTCTGAAACAGAATTAGAAGATGATACAGAACAATGCAAAAgtcataaaaacactttttatccCTATAATTGTTGTATGTGTAGCATGTCGTTTAAAAGGAAATACCAAATAGCTCAACATCAACGATCATTGCATAATTATGAATTACTAACGTTAAAGTGTGAACGTTGTATTTTTAGGACAGTTTCACAGAAAGTCTTAGATTATCATAAAACTACGCAATGTTTTAACACTGAAAAACATTTCGAATGTGAAGAgtgcaaattcaaatttatgtgGCAAGAAAATCTTGAGAATCACATTTCTACGTTTCATTGCCCAAAAGAGTTGACGAAAACAACGGATCTTATGTGCATGCTGTCTTCTAATGAGCCCATACCAACCAATAGCAAAAGCGATACCAATATTTTCGAATGTATGGACTGCCACCGCCGCTACAATCGTAAAGATCGATATAAAGCTCATTTCAAGAAATTTCACAACGATATGCCGTTGACACCGgacaataatatttcaaataggaAAACGCGCAAAAAACCGACAGCAAAAATGGAAAAGAAGTTTTTGTGTGCCTTTTGTGGTCTCTCATTTTCAAACAATTCAAATCTTACGGTACACATGCGAAGACATACGGGAGAGAAACCGTTTAAGTGTGATCTCTGCGAAATGGCCTTTCCGCGTACATCCGATTTACAAGCCCATCGACGCACACATACTGGCGAACGTCCTTTCAAATGTATTTACTGTGATAAGTCATTTTCGAGGCAATACAAATTAAACGTTCACAATCGCATACATACCGGCGAGCGTCCCTACGAGTGTACATTCTGCCAAAAATCATTTATACAGTCGAACGATCTGACACTGCATTTGCGGCGCCACACGGGTGAAAGACCTTATACGTGTGATATTTGCGGTGAAGGTTTTATATGTGCCACATCTCTTAAGCAACATCGTATCTCTAAAGGACATCCGGAGGAGAAAATTGACTTGAAAACCTGTGTGCAACAGTTGACACACTTCGATATGAAATTctaa
Protein Sequence
MSGDIKTECFINGIQYKCRTCFDPGRTVYSLRDECSKAKTWCDLLKDVAQLQINDDDLLPNTLCCKCSVKLKSSYDFILQIHDVNTKYSQLLAICNDPLQEGATNELDSLNDCLAESTIDLPLNQYMPEIKLEEDFSEPYKVNSSNSQSADGEEKLESEGLQESQEDSLLDNEDFKSSCEETGGRKKYFKTRCAVERKIQNSDDDHNDNDHRNESSSSSNESDYIPQKRLKKRKVCRSSTSSSQPVKRKKGRQAPDYYDKIEKFNDRFLCLICQKTFSLRKDCGRHIASIHLRRTPFPCEICGQSFGRKDKLQRHIRRMHSGGVVYPPNHKEWLFGDRLYYKPAAWNLVQCKLCDSKFETTKQLRDHIPKHSDLDTLHKIELTSDCVQHLFGNMLDLNAVKESICKDIRDKNWFKYYSVLNKYSYEMSISDTEAEDLEEQSADRTKKYKCDLCAGEFSFKYQVFSHLKESHGEDEISLKCNLCKLEFISIKMYQQHSTTHCRNKHKVLLCAHCPSKFVWPENMKNHNCATKLQLILPTPTKEQMTCHICDRKFEVKTKFEKHLETHKDGRIVSAKTIIRCGLCAHSFEKLRNLRKHMPLHADGKTGIDFKGSIYVKRFERSKSIDFALLQQEIQNAYRKSQISRFYRAIDRDGNEMDILDSDSDEEEANPNEGIVEKQYMCELCDMVCKRRKLLLNHQREQHNGVPLPFTCNDCTQQYVSYDLLQQHLVRDCWNEHRRIAQQCDYCNARFIWPNNLLKHKEIQHKNQKHPKPQRASTLKCEYCEKVFIWPKDLVRHRKTHTEGKKFTCPHCDRKFQRKDNLLAHIRIHCADGIPTVSNPGKSIDYILPHLIKPNGCKRIKCMICYSEHNRVRDLRSHLRTHRYTVNFDKRKEIETLDVISSQLYPDEPLPLPEEILKKRIGFDIAAENNLERFYSITNENGYEVSLDSSETESDSDDNDKDEKEDKSRRIYKCDLCPQLSFNRKYKVFAHQNNEHTWEEARHVCIHCNGRFLSSYMLQLHYKDQCKNTKKRHFCRRCPLRFMWKSNMKAHIIMEHGHEIDSNRGHECFLCQEKFFPQKELKRHLITHHSADAELHYCLLCPKTFFSVEHLNEHLSRHRLTTADVKTVESIIHSTCWPNGEKAIKCKICDLTFETMSNLREHFSSKNSQNMCARQHSLANYSATNQKGFELHLELDSETELEDDTEQCKSHKNTFYPYNCCMCSMSFKRKYQIAQHQRSLHNYELLTLKCERCIFRTVSQKVLDYHKTTQCFNTEKHFECEECKFKFMWQENLENHISTFHCPKELTKTTDLMCMLSSNEPIPTNSKSDTNIFECMDCHRRYNRKDRYKAHFKKFHNDMPLTPDNNISNRKTRKKPTAKMEKKFLCAFCGLSFSNNSNLTVHMRRHTGEKPFKCDLCEMAFPRTSDLQAHRRTHTGERPFKCIYCDKSFSRQYKLNVHNRIHTGERPYECTFCQKSFIQSNDLTLHLRRHTGERPYTCDICGEGFICATSLKQHRISKGHPEEKIDLKTCVQQLTHFDMKF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00900821;
90% Identity
-
80% Identity
-