Lari005271.1
Basic Information
- Insect
- Leptophobia aripa
- Gene Symbol
- lrrfip2
- Assembly
- GCA_951799465.1
- Location
- OX637266.1:7653019-7661180[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.9e-78 1.7e-73 247.6 24.3 1 297 110 388 110 390 0.90 2 2 1 1.9e+04 -7.3 16.0 1 48 387 433 385 461 0.69
Sequence Information
- Coding Sequence
- ATGGGTAACAGAACGGAGATGGCCACTCCTGAGAATACAGATGATGAAAGCGGCGATGCATTCACCGACGGTGATTTCGATGACTCCGAGGAGGAATTGGTTGAGCGTGATGATGACGTTGATGCTTCAACGATTCCCGTCAACGAAACTGTCAACGCAAGCGTAAATATTTCCAATGAAATTGCGCTCGATGGAGACGTGAAAAGTGTGGATAATGGTGTGACGGATTGCACAGTGCAAAGTGATGAAACGGACGCGCGGGATTCTGACGAGGAGAATAATAACGGCCCGTCCTTGATTGGCATACTCGGGGATCAGCAATGTCATGCTGAACAGCGTTTGGCGGCGCGGCGGGCTGCAAGGGCGGAGGCACGAGAGATACGCATGAGGGAATTGGAGAGACAGCAGAGGGAACAGGAGGACCATGCCGACAAAGCTTACGATATGTATGCAGAAACTGTGGGACGTCGTGGTGCAACCAGACTAGCGTCCCTCAGTCCGGCGGGGTTGCATTCGCCGAGACGGAGTTCGGAGGACTCTGACGAAGTGCTCAGTATTAAGGATCTGAGGTGTGAATTAAAAGAGGTAGAAGAGAAGTTCCGCAAAGCGATGATTTTGAACGCTCAGCTGGACAATGATAAGGCGGCCCTTGGTTACCAGCAGGAGCTGCTCAAGGATAGAATAGAAGAGCTGCAAGAGGAGTACGCGCAGTTACAgCGCGAGCACAAGGAGAAATGCTCGGCCCACGAGCGGCTAAAGCGCGATCACGCGACGCTGGAGCGCGAGTTGGGCTGCGCACGCGACGCGGTGCGAGCGCGCGACTCGGCCGTGCAGGACGCGGGCTTCACCTTCGTGGAGTCGGGGGATGCGAAGGCGCAGGGCTTCGGCGCCGTTCCGCCTTTGGCACTCGTGTCGCATCAGTCGCACGCCTTGCTCGAAGACGGAGGCGAAGGCACGCTCGACGTCCGGTTGCAGAAGCTCGTCAGCTCCAAGCAGGCCTTGGAGTCCGAAGTGCGCAAACTCAAACTGCAACTGAACGACGAACGCGCTGCGAGACAAAATGGCGTCGCCTCTCACCACGACAAGGACTACGAGAACGAATTGGAGACCCTGAGGAAGTCAGTGACGGATGCAAAGGGGCGGGCGGCGAGAGCGGAGGCGGAAGCGGCGTTACAGGCGGGTGCTGTGGCGAGGCTCGAAGCCCAAGTGCAGAGGCTCAGGGCACGGCAGGACCACCAGGACGAGCACGAGGAGACGCTCAAGCAAGAGAGGAGGCGGCTGCAGAGAGAGgCCCGCGAAGCACTCAACCGAGTAGAAGAGTTAGAGACGGAGAACAGTCATTTGACGAAACGGTTGGACAAATTGAAGAACGCCAAGTCTGCCCTGCTCAAGGAGCTGTGA
- Protein Sequence
- MGNRTEMATPENTDDESGDAFTDGDFDDSEEELVERDDDVDASTIPVNETVNASVNISNEIALDGDVKSVDNGVTDCTVQSDETDARDSDEENNNGPSLIGILGDQQCHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRGATRLASLSPAGLHSPRRSSEDSDEVLSIKDLRCELKEVEEKFRKAMILNAQLDNDKAALGYQQELLKDRIEELQEEYAQLQREHKEKCSAHERLKRDHATLERELGCARDAVRARDSAVQDAGFTFVESGDAKAQGFGAVPPLALVSHQSHALLEDGGEGTLDVRLQKLVSSKQALESEVRKLKLQLNDERAARQNGVASHHDKDYENELETLRKSVTDAKGRAARAEAEAALQAGAVARLEAQVQRLRARQDHQDEHEETLKQERRRLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00430691; iTF_01205716; iTF_01203256; iTF_01206564; iTF_01204054; iTF_00114966;
- 90% Identity
- iTF_01206564;
- 80% Identity
- -