Acar020545.1
Basic Information
- Insect
- Anthocharis cardamines
- Gene Symbol
- LRRFIP2
- Assembly
- GCA_905404175.1
- Location
- FR989954.1:12412164-12425975[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.1e-74 4.9e-70 236.5 23.6 1 297 117 395 117 397 0.88 2 2 1 2.3e+04 -7.0 15.0 1 47 394 439 394 468 0.65
Sequence Information
- Coding Sequence
- ATGGGTAATAGATCAGAGATGGCCACGCCTGAAAACACCGATGAAGAAAGCGGCGAGGCCTTTTCAGACGGTGATTTTGGAGATTCTGATGATGAATTAGTTGAGCGGAAAGATGATATTAAAATTTCAACAATACCTGTAAATGAAACTGTGAATACCGTACTTAGCAGTGTAGAGGACTGTGATTCGGACGAACTCAACGGAGCTAGCGTTAATAGTGTAGAAAATGGTGAAACAAATTGTGGTTTGCAAATTGATGTGGAAACAGTTGATGCGGGGAGGGATTCCGATGGAGAAAATAATAATAATCCAACTATTGTCGGCATACTTGGAGATCAGCATAATCATGCGGAACAACGGTTGGCGGCGCGACGGGCTGCGAGGGCGGAGGCTCGCGAGATTCGCATGAGGGAGCTCGAGAGGCAGCAGAGGGAACAAGAAGACCATGCCGACAAGGCTTACGACATGTATGCAGAAACTGTGGGACGTCGTGGTGCAACCAGACTAGCAGCCCTCAGCCCGGCCTTACAGTCGCCCAGAAGAAGTTCGGAAGACTCTGACGAAGTGCTTAGTATTAAGGATCTGAGGCACGAATTAAAGGAAGTAGAAGAGAAATTCCGCAAAGCAATGATATTGAACGCACAGTTGGACAATGACAAGGCGGCGCTCGGCTACCAGCTGGAGCTTCTCAAAGACAGAATAGAAGAATTGCAAGAGGAATACGCGCAGTTACAGCGTGAACACAAGGAGAAATGCTCAGCCCACGAGCGCTTGAAGCGCGACCACGCGACCCTCGAGCGCGAGCTGACGTGCGCGCGGGACGCGGTGCGCGCGCGCGACGCGGCCGCCGAGGGCGCGGGCTTCACGTTCGTGGAGTCGGGCGACGCGCTCGCGCAGGGCTTCGGGGCCGTGCCGCCGCTGGCGCTCGTGTCGCACCGCTCGCAGGCGCTGCTCGGGGACGGCGGGGAGGGGGGCACGCTCGATGTCCGGTTGCAGAACCTGGTGAGCTCCAAGCAGGCCTTGGAGTCGGAGGTGCGGAAACTGAAGCTGCAGCTGAACGAGGAGCGCGCCGCCCGCCAGAACGGCGTCGCCTCGCTTCACGACCAGGACTATGAGAACGAATTGGAAACCCTACGGAAGTCAGTGTCAGAAACGAAAGGTCGCGCGGCACGAGCGGAGGCGGAGGCGGCGCTGCAGGCGGGGGCGGTCGCGCGGCTCGAGGCGCAGGTGCAGCGGCTGCGGGCGAGGCAGGACCACCAGGACGAGCACGAGGAGATGCTCAAGCAGGAGAGGCGGCGGCTGCAGAGAGAGGCTCGTGAAGCTCTCAATCGAGTGGAGGAGTTGGAGACAGAGAACAGTCACTTGACGAAACGGCTAGACAAACTGAAGAATGCCAAGTCCGCGCTGCTAAAGGAGCTGTGA
- Protein Sequence
- MGNRSEMATPENTDEESGEAFSDGDFGDSDDELVERKDDIKISTIPVNETVNTVLSSVEDCDSDELNGASVNSVENGETNCGLQIDVETVDAGRDSDGENNNNPTIVGILGDQHNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRGATRLAALSPALQSPRRSSEDSDEVLSIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELQEEYAQLQREHKEKCSAHERLKRDHATLERELTCARDAVRARDAAAEGAGFTFVESGDALAQGFGAVPPLALVSHRSQALLGDGGEGGTLDVRLQNLVSSKQALESEVRKLKLQLNEERAARQNGVASLHDQDYENELETLRKSVSETKGRAARAEAEAALQAGAVARLEAQVQRLRARQDHQDEHEEMLKQERRRLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00878867;
- 90% Identity
- -
- 80% Identity
- -