Pnap012931.1
Basic Information
- Insect
- Pieris napi
- Gene Symbol
- lrrfip2
- Assembly
- GCA_905475465.1
- Location
- FR997699.1:12399527-12426572[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.4e-79 2e-74 251.0 22.9 1 297 77 355 77 357 0.90 2 2 1 2.4e+04 -7.0 15.3 1 48 354 400 354 428 0.64
Sequence Information
- Coding Sequence
- ATGATGGTTAAGCTGGGTTTGGCGATGGTTGTGGGTGTAGCCCCTGTTCTGGTGTCCTGGTGGAGGTGCCAGGGTCCTTGGTTGCAACCTCTGTTGACTACATCACCATGTCTAGAGAAGCAGCCTAAACCATGGCCAGCTAGACGGTCCCCGTCTTTGTCCGATTGTCTGGAGAGCAGCGATGAAGATTCCGCTCGGTCTGTGGTCTGCCATGTTAGACCTAAATTGGCTGAACAGCGACTGGCGGCGCGACGGGCTGCGAGGGCGGAGGCACGAGAGATACGCATGAGGGAATTGGAGAGACAGCAGAGGGAACAGGAGGACCATGCTGATAAAGCTTACGACATGTATGCAGAAACTGTGGGACGTCGTGGTGCAACCAGACTAGCGTCCCTCAGTCCGGCGGGACTGCACTCGCCGAGGCGGAGTTCGGAGGATTCTGACGAAGTACTCAGTATTAAGGATCTGAGGTACGAATTAAAAGAGGTAGAGGAAAAATTTCGCAAAGCAATGATATTGAACGCTCAGTTGGACAATGACAAAGCGGCGCTGGGATATCAGCTGGAGCTACTCAAAGATAGAATAGAAGAATTGCAAGAAGAGTACGCGCAGTTACAGCGCGAACACAAAGAGAAATGCTCAGCTCACGAACGTCTAAAGCGCGATCACGCTACCCTCGAACGCGAGTTGACCTGCGCGCGCGACGCCGTACGAGCACGAGACGCGGCCGTGGAGGGTGCGGGCTTCACGTTCGTGGAGTCGGGGGATGCGCAGGCGCAGGGCTTTGGCGCTGTGCCCCCTTTGGCCCTTGTCTCGCATCACTCGCACGCCTTGCTCGAGGACGGAGGAGAGGGCACGCTCGATGTCCGGTTGCAAAACCTCGTGAGCTCCAAGCAGGCTTTGGAGTCGGAAGTGCGGAAACTGAAATTACAACTGAACGAAGAACGCTCGGCTAGACAAAATGGCGTAGCCTCACACCACGACTTGGATTATGAAAATGAATTGGAAACCCTAAGAAAATCAATTTCGGAAGCGAAAGGGCGGGCGGCACGAGCGGAAGCGGAAGCGGCGTTACAAGCGGGCGCAGTGGCGAGACTCGAAGCCCAGGTTCAGAGGCTCAGAGCTCGGCAGGACCATCAGGACGAGCACGAGGAGATGCTTAAGCAGGAGAGGAGGAAGCTGCAGAGAGAGGCACGTGAAGCTCTCAACCGAGTTGAGGAATTGGAGACAGAGAACAATCATCTAACAAAACGGCTAGACAAACTGAAGAATGCTAAGTCAGCACTACTCAAGGAGCTGTGA
- Protein Sequence
- MMVKLGLAMVVGVAPVLVSWWRCQGPWLQPLLTTSPCLEKQPKPWPARRSPSLSDCLESSDEDSARSVVCHVRPKLAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRGATRLASLSPAGLHSPRRSSEDSDEVLSIKDLRYELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELQEEYAQLQREHKEKCSAHERLKRDHATLERELTCARDAVRARDAAVEGAGFTFVESGDAQAQGFGAVPPLALVSHHSHALLEDGGEGTLDVRLQNLVSSKQALESEVRKLKLQLNEERSARQNGVASHHDLDYENELETLRKSISEAKGRAARAEAEAALQAGAVARLEAQVQRLRARQDHQDEHEEMLKQERRKLQREAREALNRVEELETENNHLTKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00878867;
- 90% Identity
- iTF_01204913;
- 80% Identity
- -