Pmad006423.1
Basic Information
- Insect
- Pieris macdunnoughii
- Gene Symbol
- lrrfip2
- Assembly
- GCA_905332375.1
- Location
- CAJOBZ010000014.1:1187682-1206118[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2.3e-78 3.9e-74 249.5 22.6 1 298 109 388 109 390 0.90 2 3 1 1.7e+04 -5.7 13.5 1 48 386 432 386 451 0.71 3 3 0.62 1e+04 -4.7 9.4 195 232 416 458 407 465 0.38
Sequence Information
- Coding Sequence
- ATGGGTAACAGAAGAGAGATGGCTACTCCTGAAAATACTGACGATGAAAGCGGTGAAGTCTTCACTGACGGTGACTTTGAGGACTCCGAAGATGAACCAGTTGAACGTGAAATTGATGCTAAAATTGCATCAATTCCTGTTATTGATACTGTTAATGTAACTATAAACAATGATGCGAATGAACTCGACGGAGATATTAAAAGTGTGGAGAGTGGTACTGATTGCGCTGTGCAAAGTGATGAAATAGTGGATGCGCGGGATTCTGatgaagaaaataataatagcccaTCTTTAATTGGCATTCTCGGAGATCAGCAAACTCATGCTGAACAGCGACTGGCGGCGCGACGGGCTGCGAGGGCGGAGGCACGCGAGATACGCATGAGGGAATTGGAGAGACAGCAGAGAGAACAGGAGGACCATGCTGATAAAGCTTACGACATGTATGCagAAACTGTGGGACGTCGTGGTGCAACCAGACTAGCGTCCCTCAGTCCGGCGGGACTGCACTCGCCGAGGCGGAGTTCGGAGGATTCTGACGAAGTACTCAGTATTAAGGATCTGAGGTACGAATTAAAAGAGGTagaggaaaaatttcgcaaaGCGATGATATTGAACGCTCAGTTGGACAATGACAAAGCGGCGCTGGGATATCAGCTGGAGCTGCTCAAAGATAGAATAGAAGAATTGCAAGAAGAGTACGCGCAGttacagCGCGAACACAAAGAGAAATGCTCAGCCCACGAGCGTCTAAAGCGCGATCACGCTACCCTCGAACGCGAGTTGACATGTGCGCGCGACGCCGTACGAGCACGAGACGCGGCCGTGGAGGGTGCGGGCTTCACGTTCGTGGAGTCAGGGGATGCGCAGGCGCAGGGCTTTGGTGCTGTGCCCCCTTTGGCCCTTGTCTCGCATCACTCGCACGCCTTGCTCGAGGACGGAGGAGAGGGCACGCTCGATGTCCGGTTGCAAAACCTCGTGAGCTCCAAGCAGGCCTTGGAGTCggaagtgcggaaactgaaaTTACAACTGAACGAAGAACGCGCGGCTAGACAAAATGGCGTCGCCTCACACCACGACTTGGATTATGAGAATGAATTGGAAACTCTAAGGAAATCAATTTCGGAAGCGAAAGGGCGGGCGGCACGAGCGGAAGCGGAAGCGGCGTTACAAGCGGGCGCAGTGGCGAGACTCGAAGCCCAGGTTCAGAGGCTCAGGGCTCGGCAGGACCATCAGGACGAGCACGAGGAGATGCTTAAGCAGGAGAGGAGGAAGCTGCAGAGAGAGgCACGTGAAGCACTCAACCGAGTTGAAGAATTGGAGACAGAAAACAGTCATCTCACAAAACGGCTAGACAAACTGAAGAATGCTAAGTCAGCACTACTCAAGGAGCTGTGA
- Protein Sequence
- MGNRREMATPENTDDESGEVFTDGDFEDSEDEPVEREIDAKIASIPVIDTVNVTINNDANELDGDIKSVESGTDCAVQSDEIVDARDSDEENNNSPSLIGILGDQQTHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRGATRLASLSPAGLHSPRRSSEDSDEVLSIKDLRYELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELQEEYAQLQREHKEKCSAHERLKRDHATLERELTCARDAVRARDAAVEGAGFTFVESGDAQAQGFGAVPPLALVSHHSHALLEDGGEGTLDVRLQNLVSSKQALESEVRKLKLQLNEERAARQNGVASHHDLDYENELETLRKSISEAKGRAARAEAEAALQAGAVARLEAQVQRLRARQDHQDEHEEMLKQERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00878867;
- 90% Identity
- iTF_01206564;
- 80% Identity
- -