Prap000107.1
Basic Information
- Insect
- Pieris rapae
- Gene Symbol
- lrrfip2
- Assembly
- GCA_905147795.1
- Location
- LR990590.1:917772-931324[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.3e-78 1.7e-73 247.7 20.0 1 297 108 386 108 389 0.89 2 2 1 2e+04 -6.5 14.6 1 48 385 431 385 458 0.65
Sequence Information
- Coding Sequence
- ATGGGTAACAGAACAGAGATGGCTACTCCTGAAAATACAGACGATGAAAGCGGCGAAGCCTTTACTGACGGTGACTTTGAGGACTCCGAAGATGAACCAGTTGAACGTGAAGTTGATGCTAAAATTGCAACAATTCCTGTTAATGACACTGTTAATACAGCTATAAACAACGATGCGAATGAACTCGATGGAGATATTAAAAGTGAGAATGGTACTGATTGCGCTGTGCAAAGTGATGGAATGATGGATGCCCGGGATTCTGATGAAGAAAATAATAATAGCCCATCTTTAATTGGCATTCTCGGAGATCAGCAAACTCATGCTGAGCAGCGACTGGCGGCGCGACGGGCTGCGAGGGCAGAGGCACGAGAGATACGCATGAGGGAATTGGAGAGACAGCAGAGGGAACAGGAGGACCATGCTGATAAAGCTTACGATATGTATGCAGAAACTGTGGGACGTCGTGGTGCAACCAGACTAGCGTCCCTAAGTCCGGCGGGATTGCACTCGCCAAGGCGGAGTTCGGAGGATTCTGACGAAGTACTCAGTATTAAGGATCTGAGGTACGAATTAAAAGAGGTGGAGGAGAAATTTCGCAAAGCGATGATATTGAACGCTCAGTTGGACAATGACAAAGCGGCGCTTGGATATCAGTTGGAGCTGCTCAAAGATAGAATAGAAGAATTGCAAGAAGAGTACGCGCAGTTACAGCGGGAACACAAAGAGAAATGCTCCGCCCATGAGCGTCTAAAGCGCGACCACGCCACCGTCGAAGGCGAGTTGACGTGCGCCCGTGACGCGGTACGTGCACGGGACGCGGCCGTGGAGGGCGCGGGCTTCACGTTCGTGGAGTCGGGGGATGCGCAGGCGCAGGGCTTTGGCGCTGTGCCCCCTTTGGCCCTGGTCTCGCATCACTCGCACGCCTTGCTCGAGGACGGAGGAGAGGGCACGCTCGACGTCCGGTTGCAAAACCTCGTGAGCTCCAAGCAGGGTTTGGAGTCGGAAGTGCGGAAACTAAAATTACAACTGAACGAAGAACGAGCGGCTAGACAAAATGGCGTCGCATCACACCACGACTTGGATTATGAGAATGAATTGGAAACCCTAAGAAAATCAGTATCGGAAGCGAAAGGGCGGGCGGCACGAGCGGAAGCGGAAGCGGCGTTACAAGCGGGCGCTGTTGCGAGACTCGAGGCCCAGGTACAGAGGCTGAGAGCTCGGCAGGACCATCAGGACGAGCACGAGGAGATGCTTAAACAGGAGAGGAGGAAGCTGCAGAGAGAGGCACGTGAAGCCCTCAACCGAGTTGAAGAATTGGAGACGGAGAACAATCATCTAACAAAACGGCTAGACAAACTGAAGAATGCTAAGTCAGCACTACTCAAGGAGCTGTGA
- Protein Sequence
- MGNRTEMATPENTDDESGEAFTDGDFEDSEDEPVEREVDAKIATIPVNDTVNTAINNDANELDGDIKSENGTDCAVQSDGMMDARDSDEENNNSPSLIGILGDQQTHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRGATRLASLSPAGLHSPRRSSEDSDEVLSIKDLRYELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELQEEYAQLQREHKEKCSAHERLKRDHATVEGELTCARDAVRARDAAVEGAGFTFVESGDAQAQGFGAVPPLALVSHHSHALLEDGGEGTLDVRLQNLVSSKQGLESEVRKLKLQLNEERAARQNGVASHHDLDYENELETLRKSVSEAKGRAARAEAEAALQAGAVARLEAQVQRLRARQDHQDEHEEMLKQERRKLQREAREALNRVEELETENNHLTKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00878867;
- 90% Identity
- iTF_01204054; iTF_00878867; iTF_01203256;
- 80% Identity
- -