Lstr017018.1
Basic Information
- Insect
- Lathronympha strigana
- Gene Symbol
- lrrfip2
- Assembly
- GCA_949128165.1
- Location
- OX421909.1:2752534-2766747[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.6e-76 7.2e-72 243.5 23.0 1 265 115 375 115 402 0.90 2 2 1 4.5e+04 -7.8 14.4 119 166 417 464 370 473 0.56
Sequence Information
- Coding Sequence
- ATGGGTTCTCAGTCCAAAAGCGCAACACCTGACAATAGCGACGACGAGAGCGGAGAGGCCTTTACTGATGGCGACTTCGGTGACTCCGGCGATGAAATAAATGTAGAGTTAGACGTAGTAGAACCTAGCGATGATTCTAATTGTAAACTTAACGAAACGGTTAATTCTGAGCTGGTAGACATGGAGATCGCTCACGGTGCCCGCAATGGTTTCGACGAAACTAAAGTTAACGGACTTAAGAACGGAGACGCGGAATGCGACGAGATGCCTAGCGCACGGCGAGACTCGCATGGTGACCAGAATCCCTCCATTGTCGGCATTCTCGGCGGCCAGCAGGATCATGCGGAACAGCGGCttgcggcgcgtcgggcggcgcgAGCGGAGGCGCGCGAGATTCGCATGCGCGAGTTGGAGCGCCAGCAGCGAGAACAGGAGGACCATGCTGACAAGGCCTACGACATGTATGCCGAGACGGTGGGGCGGCGCACGGGCACCCGACTAACAGGGCTGAGCCCCGCGGCGCTGCACTCGCCGCGGCGGAGCTCCGAGGACTCGGCTGATGACACTTTTAACGTCAAGGATCTTAGGAGCGAATTAAAAGAAGTAGAAGAAAAGTTCCGCAAGGCGATGATTCTAAACGCGCAGCTGGACAACGACAAGGCGGCGCTCGGCTACCAGCTCGAGTTACTAAAGGATCGCATCGAGGAGCTGCATGAGGAGTACGCACAACTACAGCGGGAGCACAAAGAGAAATGCTCGGCCCACGAGCGTCTAAAACGCGAGCACACGTCGCTGGAGCGCGAGCTGGgcgccgcgcgggacgccgtgcgcgcgcgcgacctcgccgccgccgacgccggcTTCGCCTTCGTGgacgccgcgcccgcgcccgccgccaacGGGGACGCCAAGCAACTCTCCACGCTGCCGCCGCTGGCGCTAGTCTCGCATCAGAACGAGAAGCTGCTGAATGACGCCGGCGAGGGAACCCTAGACGTCCGGTTGCAAAAGTTGCTCAGCTCGAAGCAGTCGCTGGAGGGCGAGGTGCGGCGCCTGAAGTTGCAGCTCAACGAGGAGCGCCACAACGGGGTCGCGCGCGCGCACGACCAGGATCTCGAGTCTGAGTTGGAGGCCCTCCGCAAGTCGTCGGCGGAGGCGAAGGCGCGCTGCGCCCGCGCGGAGGCCGAGGCGGCGCTGCaggccgcggccgccgcgcgcctCGCCGCGCAGCTGCAGCGGCTCAGGGCGCAGGCCGACGCGCGCGACGACGCGGAGGAGCAGCTCAAGCAGGAGCGCAGGAAACTGCAGAGGGAGGCCCGAGAAGCGCTGAACCGGGTAGAAGAACTAGAGACGGAGAACAGCCACCTCACCAAGCGGCTCGACAAACTCAAGAACGCCAAGTCCGCGCTACTCAAGGAGCTGTGA
- Protein Sequence
- MGSQSKSATPDNSDDESGEAFTDGDFGDSGDEINVELDVVEPSDDSNCKLNETVNSELVDMEIAHGARNGFDETKVNGLKNGDAECDEMPSARRDSHGDQNPSIVGILGGQQDHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRTGTRLTGLSPAALHSPRRSSEDSADDTFNVKDLRSELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHKEKCSAHERLKREHTSLERELGAARDAVRARDLAAADAGFAFVDAAPAPAANGDAKQLSTLPPLALVSHQNEKLLNDAGEGTLDVRLQKLLSSKQSLEGEVRRLKLQLNEERHNGVARAHDQDLESELEALRKSSAEAKARCARAEAEAALQAAAAARLAAQLQRLRAQADARDDAEEQLKQERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00772899;
- 90% Identity
- iTF_00411479; iTF_00412525; iTF_00409299; iTF_00410299;
- 80% Identity
- -