Cfag010307.1
Basic Information
- Insect
- Cydia fagiglandana
- Gene Symbol
- lrrfip2
- Assembly
- GCA_963556715.1
- Location
- OY750796.1:2318552-2331333[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.7e-75 1.4e-70 239.0 25.4 1 266 113 370 113 393 0.90 2 2 0.088 3.3e+03 -1.9 8.1 123 166 415 458 397 467 0.48
Sequence Information
- Coding Sequence
- ATGGGTTCCCAGTCCAAAAGCGCAACGCCTGACAATAGCGACGACGAGAGCGGCGAAGCATTCACCGATGCAGACTTCGGCGACTCTGACGATGAAATCAACGTAGAGTTAGACGTAGTAGAACCTAGCGATAATTCCAAACTTAACGAAACGGTAAATTCTGAGCTGGTAGACATGGAGATCGCACACGGCGCCCGCAACGGCTTCGACGATGCTAAAGTTAACGGGCTTAAGAACGGAGACGCGGAATGTGATGGGATGCCCAGCGCGCGGCGGGACTCACATGGCGATCAGAATCCCTCCATCGTTGGCATTCTCGGCGGCCAGCAGGATCATGCGGAGCAACGGCtagcggcgcggcgggcggcgcgggcggagGCGCGCGAGATCCGCATGCGCGAGTTGGAGCGCCAGCAGCGGGAGCAGGAGGACCATGCTGACAAGGCCTACGACATGTATGCCGAGACGGTGGGGCGGCGCACGGGCACCCGGCTGACGGGGCTCAGCCCCGCGGCGCTGCACTCGCCGCGGCGGAGCTCCGAGGACTCGGCCGACGACACCTTCAACGTCAAGGACCTTAGGGGGGAGTTGAAAGAGGTAGAAGAAAAATTTCGCAAGGCGATGATCTTAAATGCGCAGCTCGACAACGACAAAGCGGCGCTCGGTTACCAGCTCGAATTACTAAAAGACCGCATCGAGGAGCTACATGAGGAATACGCACAATTACAGCGGGAGCACAAGGAGAAATGCTCGGCCCACGAGCGTCTAAAACGCGAGCACTTGTCGCTGGAGCGCGAGCtgggcgcggcgcgcggcgccgtgcgcgcgcgcgacctggccgccgccgccgccggccgcgCCTTCGTGgacgccgcgcccgcgcccgccgacGGGGAGGACAGGCCCGAGCCCAAGCTGGCGCTAGTGTCGCACCAGAATGAGCAGCTGCTCAACGACGCCGGCGAGGGAACGCTAGATGTCCGGTTGCAAAAGCTGCTCAGCTCGAAGCAGTCTCTGGAGGGTGAGGTGCGGCGCCTCAAGCTGCAGCTCAACGAGGAGCGCCACAACGGCGTCGCGCGCGCTCACGACCAGGACCTCGAATCAGAATTGGAGGCCCTCCGCAAGTCAAACGCGGAAGCGAAAGCGCGAGCGGCGCGCGCCGAGGCGGAGGCGGCGCTGCAGGCCGCCGCCGCCACGCGCCTCGGGGCGCAGCTACAGCGGCTCAAGGCGCAGGCCGACGCCAGGGACGATGCCGAGGAGCAGCTCAAGCAGGAGCGCCGCAAGCTGCAGAGGGAGGCCCGCGAAGCGCTAAACCGAGTAGAAGAGTTGGAGACGGAGAACAGCCACCTCACCAAGCGGCTCGACAAGCTCAAGAACGCCAAGTCCGCGCTGCTCAAGGAGCTGTGA
- Protein Sequence
- MGSQSKSATPDNSDDESGEAFTDADFGDSDDEINVELDVVEPSDNSKLNETVNSELVDMEIAHGARNGFDDAKVNGLKNGDAECDGMPSARRDSHGDQNPSIVGILGGQQDHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRTGTRLTGLSPAALHSPRRSSEDSADDTFNVKDLRGELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHKEKCSAHERLKREHLSLERELGAARGAVRARDLAAAAAGRAFVDAAPAPADGEDRPEPKLALVSHQNEQLLNDAGEGTLDVRLQKLLSSKQSLEGEVRRLKLQLNEERHNGVARAHDQDLESELEALRKSNAEAKARAARAEAEAALQAAAATRLGAQLQRLKAQADARDDAEEQLKQERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00772899;
- 90% Identity
- iTF_00871309;
- 80% Identity
- -