Cstr014013.1
Basic Information
- Insect
- Cydia strobilella
- Gene Symbol
- lrrfip2
- Assembly
- GCA_947568885.1
- Location
- OX387681.1:19683473-19697886[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.8e-76 4.9e-72 243.4 25.6 1 265 113 373 113 400 0.88 2 2 0.13 3.5e+03 -2.4 8.9 117 166 413 462 396 471 0.55
Sequence Information
- Coding Sequence
- ATGGGTTCCCAGTCCAAAAGCGCAACGCCTGACAATAGCGACGATGAGAGCGGCGAAGCCTTCACCGATGGAGACTTCGGCGACTCTGACGATGAAATTAACGTAGAGTTAGACGTAGTAGAACCTAGCACTGATTCCAAACTTAACGAAACGGTAAATTCTGAGCTGGTAGACATGGAGATCGCACACGGCGCCCGCAACGGCTTCGACGATGCTAAAGTTAACGGGCTTAAGAACGGAAACGCGGAATGTGACGGGATGCCTAGCGCGCGGCGGGACTCACATGGCGACCAAAATCCCTCCATCGTCGGCATTCTCGGCGGCCAGCAGGATCATGCGGAGCAACGGCTAGCGGCGCGGCGGGCGGCGCGGGCGGAGGCGCGCGAGATTCGCATGCGCGAGTTGGAGCGCCAGCAGCGGGAACAGGAGGACCATGCTGACAAGGCCTACGACATGTATGCCGAGACGGTGGGGCGGCGCACGGGCACCCGGCTGACGGGGCTCAGCCCCGCGGCGCTGCACTCGCCGCGGCGGAGCTCCGAGGACTCGGCCGATGACACCTTCAACGTCAAGGACCTTAGGGGGGAGTTGAAAGAGGTAGAAGAAAAGTTCCGCAAGGCGATGATCTTAAACGCACAGCTCGACAACGACAAAGCGGCGCTCGGCTACCAGCTCGAATTATTAAAAGACCGCATCGAGGAGCTACATGAGGAATACGCACAACTACAGCGTGAGCACAAAGAAAAATGCTCAGCTCACGAGCGTCTAAAACGCGAGCACACCTCCCTGGAGCGAGAGCTCGGCGCGGCGCGGGACGCGGTGCGGGCGCGCGACCTCGCCGCCTCGGACGCGGGCTTCGCGTTCGTGGACGCCGCGCCCGCGACCAATGGAGACCAGCACGAGAAGCAGGTGTCGACGCTGCCGCCGCTGGCGCTAGTGTCGCACCAGAACGAGAAGCTGCTGAACGACGCCGGCGAGGGAACGCTGGATGTCCGGTTGCAAAAGCTGCTCAGCTCGAAGCAATCTCTGGAGGGCGAGGTGCGGCGTCTCAAACTGCAGCTCAACGAGGAGCGCCACAACGGCGTCGCGCGCGCACACGACCAGGACCTCGAATCCGAATTGGAGGCCCTCCGCAAGTCGAACGCGGAAGCGAAGGCGGCCCGGGCGCGCGCCGAGGCGGAGGCGGCGCTGCAGGCCGCGGCCGCCGCCCGGCTCGGGGCTCAACTACAGCGGCTCAAGGCGCAGGCCGACGCCAGGGACGACGCCGAGGAGCAGCTCAAGCAGGAGCGCCGCAAGCTGCAGAGGGAGGCCCGCGAAGCGCTAAACCGAGTGGAAGAGTTGGAGACGGAAAACAGCCACCTCACCAAGCGGCTCGACAAGCTCAAGAATGCCAAGTCCGCGCTGCTCAAGGACCTGTGA
- Protein Sequence
- MGSQSKSATPDNSDDESGEAFTDGDFGDSDDEINVELDVVEPSTDSKLNETVNSELVDMEIAHGARNGFDDAKVNGLKNGNAECDGMPSARRDSHGDQNPSIVGILGGQQDHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRTGTRLTGLSPAALHSPRRSSEDSADDTFNVKDLRGELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHKEKCSAHERLKREHTSLERELGAARDAVRARDLAASDAGFAFVDAAPATNGDQHEKQVSTLPPLALVSHQNEKLLNDAGEGTLDVRLQKLLSSKQSLEGEVRRLKLQLNEERHNGVARAHDQDLESELEALRKSNAEAKAARARAEAEAALQAAAAARLGAQLQRLKAQADARDDAEEQLKQERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00772899;
- 90% Identity
- iTF_00871309;
- 80% Identity
- -