Camp023287.1
Basic Information
- Insect
- Cydia amplana
- Gene Symbol
- lrrfip2
- Assembly
- GCA_948474715.1
- Location
- OX419660.1:18548475-18567689[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.2e-74 3e-70 237.4 23.8 1 265 113 368 113 395 0.90 2 2 0.21 5.3e+03 -3.1 9.7 117 166 408 457 388 466 0.55
Sequence Information
- Coding Sequence
- ATGGGTTCCCAGTCCAAAAGCGCAACGCCTGACAATAGCGACGACGAGAGCGGCGAAGCCTTCACCGATGGAGACTTCGGCGACTCTGACGTTGAAATTAATGTAGAGTTAGACGTAGTAGAACCTAGCGATGATTCCAAACTTAACGAAACGGTGAATTCTGAACTGGTAGACATGGAGATCGCTCACGGCGCCCGCAACGGCTTCGATGGTGCAAAAGTTAACGGGCTTAAGAACGTAGACGCGGAATGTGACGGGATGCCCAGCGCGCGGCGGGACTCACATGGCGACCAGAATCCCTCCATCGTCGGCATTCTCGGCGGCCAGCAGGATCATGCGGAGCAACGCCTAGCGGCGAGGCGGGCGGCGCGGGCGGAGGCGCGCGAGATTCGCATGCGCGAGCTGGAGCGCCAGCAGCGGGAACAGGAGGACCATGCTGACAAGGCCTACGACATGTATGCCGAGACGGTGGGGCGGCGCACGGGCACCCGGCTGACGGGGCTCAGCCCCGCGGCGCTGCACTCGCCGCGGCGGAGCTCCGAGGACTCGGCCGATGACACCTTCAATGTCAAGGATCTTAGGGGGGAGTTGAAAGAGGTAGAAGAAAAGTTCCGCAAGGCGATGATCTTAAACGCGCAACTTGACAACGACAAAGCGGCGCTCGGCTACCAGCTCGAATTACTAAAAGACCGCATCGAGGAATTACATGAGGAATACGCCCAACTACAGCGGGAGCACAAAGAGAAATGTTCAGCCCACGAGCGCCTAAAACGCGAGCACTTGTCCCTGGAGCGCGAGCTGGGCCTGGCGCGCGGCGCGGTGGTCGCCCGGGAGCGCGCCGCCGCCGCCGCCGGGTTCGCCTTCGTGGACGCCACCGCCGGCGCCGAGCCGCGGGACGACACGCTGCCGCCGCTGGCGCTAGTGTCGCACCAGAACGAGAAGCTGCTCAACGACGCCGGCGAGGGAACGCTAGATGTCCGGTTGCAAAAGCTGCTGAGCTCGAAGCAGGCCCTGGAGGGCGAGGTGCGGCGGCTCAAGCTGCAGCTCAACGAGGAGCGCCACAACGGCGTCGCGCGCGCGCACGACCAGGACCTCGAATCTGAACTGGAGGCCCTCCGCAAGTGTAACGCGGAAGCGAAGGCGCGAGCGGCGCGCGCGGAGGCCGAGGCGGCGCTGCAGGCCGCCGCCGCCGCGCGGCTCGGCGCGCAGCTGCAGCGGCTCAAGGCGCAGGCCGACGCCCGAGACGACGCCGAGGAGCAGCTCAAGCAGGAGCGCCGCAAGCTGCAGAGGGAGGCCCGCGAAGCGCTAAACCGGGTGGAAGAGTTGGAGACGGAGAACAGCCACCTCACCAAGCGGCTCGACAAGCTCAAGAACGCCAAGTCCGCGCTGCTCAAGGAGCTGTGA
- Protein Sequence
- MGSQSKSATPDNSDDESGEAFTDGDFGDSDVEINVELDVVEPSDDSKLNETVNSELVDMEIAHGARNGFDGAKVNGLKNVDAECDGMPSARRDSHGDQNPSIVGILGGQQDHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRTGTRLTGLSPAALHSPRRSSEDSADDTFNVKDLRGELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHKEKCSAHERLKREHLSLERELGLARGAVVARERAAAAAGFAFVDATAGAEPRDDTLPPLALVSHQNEKLLNDAGEGTLDVRLQKLLSSKQALEGEVRRLKLQLNEERHNGVARAHDQDLESELEALRKCNAEAKARAARAEAEAALQAAAAARLGAQLQRLKAQADARDDAEEQLKQERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00772899;
- 90% Identity
- iTF_00871309;
- 80% Identity
- -