Cpom015311.1
Basic Information
- Insect
- Cydia pomonella
- Gene Symbol
- lrrfip2
- Assembly
- GCA_033807575.1
- Location
- CM066352.1:2614599-2628216[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.9e-75 8.5e-71 240.0 17.3 1 265 113 380 113 407 0.87 2 2 0.18 7.8e+03 -2.9 9.8 117 166 420 469 406 478 0.46
Sequence Information
- Coding Sequence
- ATGGGTTCCCAGTCCAAAAGCGCAACGCCTGACAATAGCGACGACGAGAGCGGCGAAGCCTTCACCGATGGAGACTTTGGCGACTCTGACGATGAAATTAATGTAGAGTTAGACGTAGTAGAACCTATTGATGattccaaacttaacgaaacgGTAAATTCTGAACTGGTAGACATGGAGATCGCTCACGGCGCCCGCAACGGCTTCGACGATGCTAAAGTTAACGGTCTTAAGAACGGAGACGCGGAATGTGACGGGATGCCCAGCGCGCGGCGGGACTCACATGGCGACCAGAATCCCTCTATCGTCGGTATTCTCGGTGGCCAGCAGGATCATGCGGAGCAACGTctagcggcgcggcgggcggcgcgggcggagGCGCGCGAGATCCGCATGCGCGAGCTGGAGCGTCAGCAGCGGGAGCAGGAGGACCATGCTGACAAGGCCTACGACATGTATGCCGAGACGGTGGGGCGGCGCACGGGCACCCGATTGACGGGGCTGAGCCCCGCGGCGCTGCACTCGCCGCGGCGGAGTTCCGAGGACTCGGCCGATGACACATTCAACGTAAAGGACCTTAGGGGGGAGTTGAAAGAGGTAGAAGAAAAGTTCCGCAAGGCGATGATCTTAAACGCGCAGCTTGACAACGACAAAGCGGCGCTCGGCTACCAGCTCGAATTACTAAAAGACCGCATCGAGGAGCTACACGAGGAATACGCACAACTACAGCGTGAGCACAAAGAGAAATGTTCAGCGCACGAACGTCTAAAACGCGAGCACGCCTCCCTCGAGCGCGAGCTGGGCGCGGCGCGGGACGCGGTGCGGGCGCGCGACCTGGCCGCCGCCGACGCGGGCTTCGCCTTCGTcgacgccgcgcccgcgccgcccgcacCGCCCGCACCGCCCGCCGCCAACGGCGAGGACAAGCCGCTGTCCACGCTGCCGCCGCTGGCGCTCGTGTCGCATCAGAACGAGAAGCTGCTGAACGACGCCGGCGAGGGGACGCTAGATGTCCGGTTGCAAAAGCTGCTTAGCTCAAAGCAGTCGCTGGAGGGCGAGGTGCGGCGTCTGAAATTGCAGCTTAACGAGGAGCGTCACAATGGCGTCGCGCGCGCACACGATCAGGACCTCGAATCCGAATTGGAGGCCCTCCGCAAATCGAACGTGGAAGCGAAAGCGCGGTTGGCGCGAGCCGAGGCCGAAGCGgcgctgcaggccgccgcgGCCGCGCGCCTGGCCGCGCAGCTGCAGCGCCTCAAGGCGCAGGCCGACGCCCGCGACGACGCCGAGGAGCAGCTCAAGCAGGAGCGCCGCAAGCTGCAGAGGGAGGCCCGCGAAGCGTTAAACCGAGTGGAAGAGCTGGAGACGGAGAACAGCCACCTCACCAAGCGGCTCGACAAGCTCAAGAATGCCAAGTCCGCGCTGCTCAAGGAGCTGTGA
- Protein Sequence
- MGSQSKSATPDNSDDESGEAFTDGDFGDSDDEINVELDVVEPIDDSKLNETVNSELVDMEIAHGARNGFDDAKVNGLKNGDAECDGMPSARRDSHGDQNPSIVGILGGQQDHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRTGTRLTGLSPAALHSPRRSSEDSADDTFNVKDLRGELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHKEKCSAHERLKREHASLERELGAARDAVRARDLAAADAGFAFVDAAPAPPAPPAPPAANGEDKPLSTLPPLALVSHQNEKLLNDAGEGTLDVRLQKLLSSKQSLEGEVRRLKLQLNEERHNGVARAHDQDLESELEALRKSNVEAKARLARAEAEAALQAAAAARLAAQLQRLKAQADARDDAEEQLKQERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00772899;
- 90% Identity
- iTF_00871309;
- 80% Identity
- -