Lpla033966.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lasius platythorax
Gene Symbol
-
Assembly
GCA_963971435.1
Location
OZ020544.1:9894619-9897378[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 1.5e-05 0.0031 19.4 3.0 1 23 263 285 263 285 0.99
2 12 2.6 5.1e+02 3.0 7.7 1 23 290 312 290 312 0.95
3 12 0.001 0.21 13.6 1.7 3 23 323 343 322 343 0.96
4 12 1.5e-05 0.0031 19.4 2.8 1 23 431 453 431 453 0.97
5 12 0.0009 0.18 13.8 1.3 1 22 456 477 456 480 0.90
6 12 1.1e-06 0.00021 23.0 1.6 1 23 519 542 519 542 0.97
7 12 2e-06 0.00041 22.2 1.0 1 23 578 600 578 600 0.99
8 12 0.0002 0.04 15.9 4.0 1 23 614 636 614 636 0.96
9 12 0.00019 0.037 16.0 4.7 1 23 642 664 642 664 0.98
10 12 0.00029 0.058 15.4 1.4 1 23 670 692 670 692 0.98
11 12 5.7e-05 0.011 17.6 6.5 1 23 698 720 698 720 0.98
12 12 0.00026 0.052 15.5 0.3 1 21 726 746 726 747 0.93

Sequence Information

Coding Sequence
ATGCAAGACGACGGCGAAATGTTGACGCGGGCAAATCAGGACACCAGTCTCTGCCGCGTCTGTCTGACTATGAATCATTACAACCAGTGCATCTTCCGCAAAAATTGGAGCAATCCCGATAGCGCGGACACGTCCGAACTTCTCTCAAAGAAACTGCAATTGTGCGGCGGGGTGGAGGTTCAGGAAGACGATGGTTTGCCTTCTAGCATCTGTACCaagtgtgaaaaaaaaattaatgttgcCTACGAATTGAGGGAACAGTGCCAGAAAGCAGACAAAGAGCTTAGAAAACTGTATGGAATAACATTGAGCACAAATGTTACTGGCAACTTTATTCCtacaaaaGATCAGTGTTGTCAAACCGAGCAATCTTTTATTCTGGATACAATCAAGTTAGAAGACAATAAGGaattaaatatcgataatagaattaatatagaGAAGAATATCTTTATGACAGAATCAAGAAATGTTATGAAACATGAACAGCCAGATACTTTTAATCAAACAGAGAATATTCTAGTAGATAATGTATCAGATTTAgattgcattaataaatataaacaacatGATAAAGTAGTTATAAAGGAAGTTTATAGAACGAGAAGACTAACTATGTTTAAAAGAGTTACATCTATGGAGAATTTGAAGAATCATAAAGAAAGACAGAGGAGATATATCAAAAAGAGCACAAGCGTTAAACGCGATATCAGCAATAGCGAGTATCAAACAAAGACAAAAAATGTTGATAGTGGAATGGATACAATGTCAGAATttgaattacaatataaatgtcCAAAATGTGATAGATTTTATTCCAGTAAAAGGTCTTTAGATAGACACACGTCGACTCATGATGATAAAGAGTTCAAATGTGATAACTGTGATAAGCAATTTTTCTGTTTGGATAAACTGCATAAGCATTTTAATCTACACAAAACGAAGGAGAAGCCAGAGCCGGTGTTTTGCAGAATCTGCAACAAAAGCTTCAGGAAAACTGATACTATGGTTAGACATTTGAATGCCCACAAGAGAGCGAATCCTAAGGAAGTTTTCTCTATATTAAAAGAGATACGAGACAAGAGAAAATTAGAAGATGATCCAGAGTTCTCTGAAATGTCGCTTCACGTCATGATGAATAAGGATGAAGCACATGATGAAAAATCGCAAAGCCAAAGGGATGGCACGACGAGAGAATTAAGAAAacgtaatgtaaaaattgagTCGAAAGATTCGTTAAATAGCGATTCGAGTGATGACAAAGTTAAGTCCTTTGACGATACGTTGTTCTTTGACTGCAGATATTGCAGCAAACGCTTTACCAACGAAAAGAGCCTTCAACGTCATCAGTCAGTACACAAGAAATTCATCTGTAGCGTCTGCAACATGAAATTTTTCCGACAGGACAGGCTTAAGAGTCACATGGATCGGTACGGTCATGACGAAAGCAAAACATGTTCGGAGCCACAGAGACCACCTGACGATAAGTCGGCTATCAAGCTGATAAACAGTTGGATCAGGGAAGAATTGGATTCCGATAACGAGGGCAAGGGCTTTCCCTGCAAGATCTGTGGAAAATCGTACGACACGAAGAAGTCTTTATTGAAACATCAAATGAAGACGCACGGCGGACAGGACGAGTATTGCGCAAATTGCGGCGTAAACAGCGTGTGTATTTGCGCGGATAAGTACAAAGATGATCGGGAAAAGAGTAACGAAAAGTCGAAGCTCTACACATGCGAGGAGTGTAACAAGTCGTTCGAGAAGGAGATCAAGTTGCAGAGGCATCTGCGAATTCACGAGCGCGCCAAGGAGCAGCAGGACGCGAATTTCAAACGTTTCCTCTGTCACATATGCAGCAAAACGTTCCGGCAGAACACCGGTCTCATGTTTCACATGAGAACGCACACGGGTTACAAGCCGCACGTGTGCAAGTACTGCGGCCGTGGTTTCACGTCCAACTCGAATTGCATCAACCACGAGAGGACTCACACGGGCGATCGGCCGTTCGTCTGTCAGTATTGCAGCGCGGCGTTCGCCAAATCGTGCACCCTCAAGGCTCACATCACCACGCATACAGGCGAGGCGAATTATCATTGCAAGACCTGCGGTAAATCGTTTCGCCGGCTGAAGTATCTGAAGGAGCATAGGTTCACGCACACGGGCGAGAAACCGTACGCTTGCAAGATCTGCGGCACGGCTTACAGTCATTCCGGCAGCTTGTTCGTCCACGAGAAGAAGTGCAAGGCCCAGTATAACAATTATCAGTCGGGAACGTTGCAAAACGCTCAGCAGCAGGCCACCTATTGCGGCCAATCGCCTCAGACGACCATCTCCGGCGGCATCTCTTCCCCTTCCTCGGTTATCGCGCCCATCATCACGACCGCATTGCCACAGGCTCATCTGAACGTCATCAACAGCACTCTGAATGTACAGACGAACAAGGGTTACATGGACGATATTCAGCGAATAAACGCGCATGCAGCGGGTACAGCGACCACGGTCGTCTCATCGGGTCTGCATCCGAGCACTGACATTTCCGAAATAAATTCCACTGTCAGGAACTTTGCCATTATCGGGCAAATGTTTCACACATAA
Protein Sequence
MQDDGEMLTRANQDTSLCRVCLTMNHYNQCIFRKNWSNPDSADTSELLSKKLQLCGGVEVQEDDGLPSSICTKCEKKINVAYELREQCQKADKELRKLYGITLSTNVTGNFIPTKDQCCQTEQSFILDTIKLEDNKELNIDNRINIEKNIFMTESRNVMKHEQPDTFNQTENILVDNVSDLDCINKYKQHDKVVIKEVYRTRRLTMFKRVTSMENLKNHKERQRRYIKKSTSVKRDISNSEYQTKTKNVDSGMDTMSEFELQYKCPKCDRFYSSKRSLDRHTSTHDDKEFKCDNCDKQFFCLDKLHKHFNLHKTKEKPEPVFCRICNKSFRKTDTMVRHLNAHKRANPKEVFSILKEIRDKRKLEDDPEFSEMSLHVMMNKDEAHDEKSQSQRDGTTRELRKRNVKIESKDSLNSDSSDDKVKSFDDTLFFDCRYCSKRFTNEKSLQRHQSVHKKFICSVCNMKFFRQDRLKSHMDRYGHDESKTCSEPQRPPDDKSAIKLINSWIREELDSDNEGKGFPCKICGKSYDTKKSLLKHQMKTHGGQDEYCANCGVNSVCICADKYKDDREKSNEKSKLYTCEECNKSFEKEIKLQRHLRIHERAKEQQDANFKRFLCHICSKTFRQNTGLMFHMRTHTGYKPHVCKYCGRGFTSNSNCINHERTHTGDRPFVCQYCSAAFAKSCTLKAHITTHTGEANYHCKTCGKSFRRLKYLKEHRFTHTGEKPYACKICGTAYSHSGSLFVHEKKCKAQYNNYQSGTLQNAQQQATYCGQSPQTTISGGISSPSSVIAPIITTALPQAHLNVINSTLNVQTNKGYMDDIQRINAHAAGTATTVVSSGLHPSTDISEINSTVRNFAIIGQMFHT