Lnig011358.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lasius niger
Gene Symbol
-
Assembly
GCA_001045655.1
Location
LBMM01001424.1:1-3208[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 8.9 9.6e+02 0.6 0.1 3 17 71 85 70 86 0.81
2 13 9.5e-06 0.001 19.4 3.0 1 23 263 285 263 285 0.99
3 13 1.6 1.7e+02 3.0 7.7 1 23 290 312 290 312 0.95
4 13 0.00065 0.069 13.6 1.7 3 23 323 343 322 343 0.96
5 13 9.5e-06 0.001 19.4 2.8 1 23 431 453 431 453 0.97
6 13 0.00055 0.059 13.8 1.3 1 22 456 477 456 480 0.90
7 13 6.6e-07 7.1e-05 23.0 1.6 1 23 519 542 519 542 0.97
8 13 1.3e-06 0.00013 22.2 1.0 1 23 578 600 578 600 0.99
9 13 0.00012 0.013 15.9 4.0 1 23 614 636 614 636 0.96
10 13 0.00011 0.012 16.0 4.7 1 23 642 664 642 664 0.98
11 13 0.00018 0.019 15.4 1.4 1 23 670 692 670 692 0.98
12 13 3.5e-05 0.0037 17.6 6.5 1 23 698 720 698 720 0.98
13 13 0.00016 0.017 15.5 0.3 1 21 726 746 726 747 0.93

Sequence Information

Coding Sequence
ATGCAAGACGACGGCGAAATGTTGACGCGGGCAAATCAGGACACCAGTCTCTGCCGCGTCTGTCTGACTATGAATCATTACAACCAGTGCATCTTCCGCAAAAATTGGAGCAATCCCGATAGCGCGGACACGTCCGAACTTCTCTCAAAGAAACTGCAATTGTGCGGCGGGGTGGAGGTTCAGGAAGACGATGGTTTGCCTTCTAGCATCTGTACcaagtgtgaaaaaaaaattaatgttgccTACGAATTGAGGGAACAGTGCCAGAAAGCAGACAAAGAGCTTAGAAAACTGTATGGAATAACATTGAGCACAAATGTTACTGGCAACTTTATTCCtacaaaaGATCAGTGTTGTCAAACCGAGCAATCTTTTATTCTGGATACAATCAAGTTAGAAGACAATAAggaattaaatatcgataatagaattaatatagagAAGAATATCTTTATGACAGAATCAAGAAATGTTATGAAACATGAACAGCCAGATACTTTTAATCAAACAGAGAATATTCTAGTAGATAATGTATCAGATTTagattgcattaataaatataaacaacatGATAAAGTAGTTATAAAGGAAGTTCATAGAACGAGAAGACTAACTATGTTTAAAAGAGTTACATCTATGGAGAATTTGAAGAATCATAAAGAAAGACAGAGGAGATATATCAAAAAGAGCACAAGCGTTAAACGCGATATCAGCAATAGCGAGTATCAAACAAAGACAAAAAATGTTGATAGTGGAATGGATACAATGTCAGAATttgaattacaatataaatgtcCAAAATGTGATAGATTTTATTCCAGTAAAAGGTCTTTAGATAGACACACGTCGACTCATGATGATAAAGAGTTCAAATGTGATAACTGTGATAAGCAATTTTTCTGTTTGGATAAACTGCATAAGCATTTTAATCTACACAAAACGAAGGAGAAGCCAGAGCCGGTGTTTTGCAGAATCTGCAACAAAAGCTTCAGGAAAACTGATACTATGGTTAGACATTTGAATGCCCACAAGAGAGCGAATCCTAAGGAAgttttctctatattaaaagagatacGAGACAAGAGAAAATTAGAAGATGATCCAGAGTTCTCTGAAATGTCGCTTCACGTCATGATGAATAAGGATGAAGCACATGATGAAAAATCGCAAAGCCAAAGGGATGGCACGACGAGAGAATTAAGAAAacgtaatgtaaaaattgagcCGAAAGATTCGTTAAATAGCGATTCGAGTGATGACAAAGTTAAGTCCTTCGACGATACGTTGTTCTTTGACTGCAGATATTGCAGCAAACGCTTTACCAACGAAAAGAGCCTTCAACGTCATCAGTCAGTACACAAGAAATTCATCTGTAGCGTCTGCAACATGAAATTTTTCCGACAGGACAGGCTTAAGAGTCACATGGATCGGTACGGTCATGACGAAAGCAAAACATGTTCGGAGCCACAGAGACCACCTGACGATAAGTCGGCTATCAAGCTGATAAACAGTTGGATCAGGGAAGAATTGGATTCCGATAACGAGGGCAAGGGCTTTCCCTGCAAGATCTGTGGAAAATCGTACGACACGAAGAAGTCTTTATTGAAACATCAAATGAAGACGCACGGCGGACAGGACGAGTATTGCGCGAATTGCGGCGTAAACAGCGTGTGTATTTGCGCGGATAAGTACAAAGATGATCGGGAAAAGAGTAACGAAAAGTCGAAGCTCTACACATGCGAGGAGTGTAACAAGTCGTTCGAGAAGGAGATCAAGTTGCAGAGGCATCTGCGAATTCACGAGCGCGCCAAGGAGCAGCAGGACGCGAATTTCAAACGTTTCCTCTGTCACATATGCAGCAAAACGTTCCGGCAGAACACCGGTCTCATGTTTCACATGAGAACGCACACGGGTTACAAGCCGCACGTGTGCAAGTACTGCGGCCGTGGTTTCACGTCCAACTCGAATTGCATCAACCACGAGAGGACTCACACGGGCGATCGGCCGTTCGTCTGTCAGTATTGCAGCGCGGCGTTCGCCAAATCGTGCACCCTCAAGGCTCACATCACCACGCATACAGGCGAGGCGAATTATCATTGCAAGACCTGCGGTAAATCGTTTCGCCGGCTGAAGTATCTGAAGGAGCATAGGTTCACGCACACGGGCGAGAAACCGTACGCTTGCAAGATCTGCGGCACGGCTTACAGTCATTCCGGCAGCTTGTTCGTCCACGAGAAGAAGTGCAAGGCCCAGTATAACAATTATCAGTCGGGAACGTTGCAAAACGCTCAGCAGCAGGCCACCTATTGCGGCCAATCGCCTCAGACGACCATCTCCGGCGGCATCTCTTCCCCTTCCTCGGTTATCGCGCCCATCATCACGACCGCATTGCCACAGGCTCATCTGAACGTCATCAACAGCACACTGAATGTACAGACGAACAAGGGTTACATGGACGATATTCAGCGGATAAACGCGCATGCAGCGGGTACAGCGACCACGGTCGTCTCATCGGGTCTGCATCCGAGCACTGACATTTCCGAAATGAATTCCACTGTCAGGAACTTTGCCATTATCGGGCAAATGTTTCACACATAA
Protein Sequence
MQDDGEMLTRANQDTSLCRVCLTMNHYNQCIFRKNWSNPDSADTSELLSKKLQLCGGVEVQEDDGLPSSICTKCEKKINVAYELREQCQKADKELRKLYGITLSTNVTGNFIPTKDQCCQTEQSFILDTIKLEDNKELNIDNRINIEKNIFMTESRNVMKHEQPDTFNQTENILVDNVSDLDCINKYKQHDKVVIKEVHRTRRLTMFKRVTSMENLKNHKERQRRYIKKSTSVKRDISNSEYQTKTKNVDSGMDTMSEFELQYKCPKCDRFYSSKRSLDRHTSTHDDKEFKCDNCDKQFFCLDKLHKHFNLHKTKEKPEPVFCRICNKSFRKTDTMVRHLNAHKRANPKEVFSILKEIRDKRKLEDDPEFSEMSLHVMMNKDEAHDEKSQSQRDGTTRELRKRNVKIEPKDSLNSDSSDDKVKSFDDTLFFDCRYCSKRFTNEKSLQRHQSVHKKFICSVCNMKFFRQDRLKSHMDRYGHDESKTCSEPQRPPDDKSAIKLINSWIREELDSDNEGKGFPCKICGKSYDTKKSLLKHQMKTHGGQDEYCANCGVNSVCICADKYKDDREKSNEKSKLYTCEECNKSFEKEIKLQRHLRIHERAKEQQDANFKRFLCHICSKTFRQNTGLMFHMRTHTGYKPHVCKYCGRGFTSNSNCINHERTHTGDRPFVCQYCSAAFAKSCTLKAHITTHTGEANYHCKTCGKSFRRLKYLKEHRFTHTGEKPYACKICGTAYSHSGSLFVHEKKCKAQYNNYQSGTLQNAQQQATYCGQSPQTTISGGISSPSSVIAPIITTALPQAHLNVINSTLNVQTNKGYMDDIQRINAHAAGTATTVVSSGLHPSTDISEMNSTVRNFAIIGQMFHT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00869076;
90% Identity
iTF_00869076;
80% Identity
-