Fsel025035.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Formica selysi
Gene Symbol
-
Assembly
GCA_009859135.1
Location
CM020818.1:6017906-6021140[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 1.1e-05 0.0018 19.4 3.0 1 23 260 282 260 282 0.99
2 12 1.8 3e+02 3.0 7.7 1 23 287 309 287 309 0.95
3 12 0.00077 0.13 13.6 2.1 3 23 320 340 319 340 0.97
4 12 5.8e-05 0.0095 17.1 4.6 1 23 430 452 430 452 0.97
5 12 0.00037 0.061 14.6 1.3 1 22 455 476 455 479 0.91
6 12 7.7e-07 0.00013 23.0 1.6 1 23 518 541 518 541 0.97
7 12 1.5e-06 0.00024 22.2 1.0 1 23 576 598 576 598 0.99
8 12 0.00014 0.023 15.9 4.0 1 23 612 634 612 634 0.96
9 12 0.00013 0.022 16.0 4.7 1 23 640 662 640 662 0.98
10 12 0.00021 0.035 15.4 1.4 1 23 668 690 668 690 0.98
11 12 4e-05 0.0067 17.6 6.5 1 23 696 718 696 718 0.98
12 12 0.00019 0.031 15.5 0.3 1 21 724 744 724 745 0.93

Sequence Information

Coding Sequence
ATGCAAGACGACGACGAAATGTCGGCGCGGGCAAATCAGGACATCAGTCTCTGCCGCGTCTGTCTGACTATGAATCACTGCAACCAGTGCATCTTCCGTAAAAATTGGAACGATCCAGATAGCGCGGACACATCCGAACTGCTATCAAAGAAACTGCAATTGTGCGGTGGAGTGGAGgtTCAGGAAGACGATGGTTTACCTTCTAGCATCTGTACCAAGTgtgaaatgaaaattaatgttGCCTACGAATTGAGAGAACAATGCCAGAAAGCAGACAAGGAGCTTAGAAAACTCTATGGAATAACGTTGAGCACAAATGTTACTAGCAACTATATTCTTacaaaaGATCAATATTGTCAAACCGAGCAATCTTTTAACCTGGATTCAATCAAGTTAGAGGACAATAAGGAATTAAATATGGATAATAGAGATAATATAGAGAAGAATATCTTTATGACAGAATCAAGGAATGTTATGAAACATGAACAACCAGATACTTTTAATcaaacagaaaatattttagtagATAATGTACCAGATTTAGATTGCGttaataaatgtaaacaacatgataaaattgttataaaggAAGTTCATAGAACGAGAAGACTAACTATGTTCAAAAGAGTTACATCTATGGAGAATTTGAAGAATCATAAAGAAAGACaaagaagatatataaaaaagagcaCAAGCGTTAAACGAGATAGCGAGTATCAAACAAACACGAAAAATATTGATAGTAAAATAGATACAATGTCAGAATATGAATTGCGATATAAATGTCCAAAATGTGATAGATTTTATTCCAGTAAAAGGTCTTTAGATAGACACACATCAACTCATGATGATAAAGAGTTCAAATGTGATAACTGtgataaacaatttttctgtTTGGATAAACTGCATAAGCATTTTAATCTGCACAAAACGAAAGAGAAGCCAGAACCAGTGTTTTGCAGAATCTGCAATAAAAGATTCAGGAAAACTGATACTATGGTTAGACATTTGAATGTTCACAAGAGAGCGAATCCTAAGGAagttttttctatattaaaagagattcgagacaaaagaaaattagaaaataatacagaatACTCCGAAATGTCACTTCATCTCATTGTCAATAAGGATGAAATAATAGCACATGAAGAAAAATCGCAAAGCGTAAAAGATAGTACAACGAGAGAATTAAGAAAACGTAACGTAAAAAGTGAACAGAGAGATTCGTTAAATAGCGATTCGAGTAATGACAAATTTAAGTCTTTTGACGATACATTGCTTTTTGACTGCAGATATTGCAGCAAGCACTTTACTAACGAAAAAAGCCTTCAACGTCATCAGTcagtacataaaaaatttgtttgtaGCGTCTGCAACATGAAATTTTTCCGGCAGGATAGGCTTAAGAGTCACATGGATCGATATGGTCATGACGAGAGCAAAACATGTTCGGAGCCGCAGAGACCACCTGATGATAAATCGGCCATTAAGCTGATAAACAGTTGGATCAGGGAAGAATTGGATTCCGATAACGAGGGTAAGGGCTTTCCCTGTAAGATTTGTGGAAAATCGTACGACACAAAGAAGTctttattaaaacatcaaaTGAAGACACATGGTGGACAAGACGAATATTGCGCAAACTGCGGTGCAAGCAGCGTGTGTATTTGCGCAGATAAGTACAAAGATCGGGAAAAGAGTAACGAAAAGTTAAAGCTATATACATGCGAGGAGTGTAACAAGTCATTCGAGAAGGAGATCAAATTGCAGAGGCATTTACGAATTCACGAGCGCGCCAAGGAGCAGCAGGACACGAATTTCAAACGTTTTCTCTGTCACATATGCAGCAAAACATTTCGGCAGAACACCGGTCTTATGTTTCATATGAGAACGCACACGGGTTACAAGCCGCATGTGTGTAAGTACTGCGGCCGTGGTTTCACGTCCAACTCAAATTGCATCAATCATGAGAGGACTCACACGGGCGATCGGCCGTTTGTCTGTCAATATTGCAGTGCGGCGTTCGCCAAGTCATGCACCCTCAAGGCCCACATCACCACGCACACCGGCGAGGCGAATTATCATTGTAAGACCTGCGGTAAATCGTTTCGCCGACTAAAGTATCTGAAGGAGCATAGATTCACGCACACAGGTGAGAAACCGTACGCATGCAAGATCTGTGGCACGGCTTACAGTCATTCCGGCAGTTTGTTTGTACACGAGAAGAAGTGCAAGGCGCAGTATAGCAATTATCAGTCGGAAACTGTGCAAAACGCGCAGCAACAAACTGCCTACTGCGGCCAGTCGCCCCAGACGACCATTTCCGGCGGCATTTCTTCAGTTACATCTCCTTCCTCGGTTATCGCGCCTATCATCACGACCACATTGCCTCAAGCTCATTTGAATATCATCAACAGCACTCTGAATGTACAGACGAACAAGGATTACATGGACGATATTCAGCGAATAAACGCACATGCAACGGGTACAGCGACTACGGTTGTTTCATCGGGTCTGCAACCAAACACTGACATTTCCGAAATGAATTCCACTGTGAGGAACTTTGCCATTATCGGGCAAATgtttcatacataa
Protein Sequence
MQDDDEMSARANQDISLCRVCLTMNHCNQCIFRKNWNDPDSADTSELLSKKLQLCGGVEVQEDDGLPSSICTKCEMKINVAYELREQCQKADKELRKLYGITLSTNVTSNYILTKDQYCQTEQSFNLDSIKLEDNKELNMDNRDNIEKNIFMTESRNVMKHEQPDTFNQTENILVDNVPDLDCVNKCKQHDKIVIKEVHRTRRLTMFKRVTSMENLKNHKERQRRYIKKSTSVKRDSEYQTNTKNIDSKIDTMSEYELRYKCPKCDRFYSSKRSLDRHTSTHDDKEFKCDNCDKQFFCLDKLHKHFNLHKTKEKPEPVFCRICNKRFRKTDTMVRHLNVHKRANPKEVFSILKEIRDKRKLENNTEYSEMSLHLIVNKDEIIAHEEKSQSVKDSTTRELRKRNVKSEQRDSLNSDSSNDKFKSFDDTLLFDCRYCSKHFTNEKSLQRHQSVHKKFVCSVCNMKFFRQDRLKSHMDRYGHDESKTCSEPQRPPDDKSAIKLINSWIREELDSDNEGKGFPCKICGKSYDTKKSLLKHQMKTHGGQDEYCANCGASSVCICADKYKDREKSNEKLKLYTCEECNKSFEKEIKLQRHLRIHERAKEQQDTNFKRFLCHICSKTFRQNTGLMFHMRTHTGYKPHVCKYCGRGFTSNSNCINHERTHTGDRPFVCQYCSAAFAKSCTLKAHITTHTGEANYHCKTCGKSFRRLKYLKEHRFTHTGEKPYACKICGTAYSHSGSLFVHEKKCKAQYSNYQSETVQNAQQQTAYCGQSPQTTISGGISSVTSPSSVIAPIITTTLPQAHLNIINSTLNVQTNKDYMDDIQRINAHATGTATTVVSSGLQPNTDISEMNSTVRNFAIIGQMFHT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00869076;
90% Identity
iTF_00869076;
80% Identity
-