Fase017149.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Formica aserva
Gene Symbol
-
Assembly
GCA_037039905.1
Location
JAXRKO010000014.1:5336943-5339696[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 1.5e-05 0.0029 19.4 3.0 1 23 262 284 262 284 0.99
2 12 2.5 4.9e+02 3.0 7.7 1 23 289 311 289 311 0.95
3 12 0.001 0.21 13.6 2.1 3 23 322 342 321 342 0.97
4 12 3e-05 0.006 18.4 4.6 1 23 432 454 432 454 0.97
5 12 0.00049 0.098 14.6 1.3 1 22 457 478 457 481 0.91
6 12 1e-06 0.00021 23.0 1.6 1 23 520 543 520 543 0.97
7 12 2e-06 0.00039 22.2 1.0 1 23 578 600 578 600 0.99
8 12 0.00019 0.038 15.9 4.0 1 23 614 636 614 636 0.96
9 12 0.00018 0.036 16.0 4.7 1 23 642 664 642 664 0.98
10 12 0.00028 0.056 15.4 1.4 1 23 670 692 670 692 0.98
11 12 5.4e-05 0.011 17.6 6.5 1 23 698 720 698 720 0.98
12 12 0.00025 0.05 15.5 0.3 1 21 726 746 726 747 0.93

Sequence Information

Coding Sequence
ATGCAAGACGACGACGAAATGTCGGCGCGGGCGAATCAGGACATCAGTCTCTGCCGCGTCTGTCTGACTATGAATCACTGCAACCAGTGCATCTTCCGTAAAAATTGGAACGATCCAGATAGCGCGGACACATCCGAACTGCTCTCAAAGAAACTGCAATTGTGCGGTGGAGTGGAGgtTCAGGAAGACGATGGTTTACCTTCTAGCATCTGTACCAAGTgtgaaatgaaaattaatgttGCCTACGAATTGAGAGAACAATGCCAGAAAGCAGACAAGGAGCTTAGAAAACTCTATGGAATAATGTTGAGCGCAAATGTTACTAGCAACTGTATTCTTACaaaaGATCAATATTGTCAAACCGAGCAATCTTTTAACCTGGATACAATCAAGTTAGAGGACAATAAGGAATTAAATATGGATAATAGAGATAATATAGAGAAGAATATCTTTATGACAGAATCAAGGAATGTTATGAAACATGAACAACCAGATACTTTTAATcaaacagaaaatattttagtagATAATGTACCAGATTTAGATTGCgttaataaatgtaaacaacatgataaaattgttataaaagaAGTTCATAGAACGAGAAGACTAACTATGTTCAAAAGAGTTACATCTATGGAGAATTTGAAGAATCATAAAGAAAGACAAAGAAGATATATCAAAAAGAGCACAAGCGTTAAACGAGATATCAATAGCGAGTATCAAACAAACacgaaaaataatgatagtaAAATAGATACAATGTCAGAATATGAATTGCGATATAAATGTCCAAAATGTGATAGATTTTATTCCAGTAAAAGGTCTTTAGATAGACACACATCAACTCATGATGATAAAGAGTTCAAATGTGATAACTGtgataaacaatttttctgtTTGGATAAACTGCATAAGCATTTTAATCTGCACAAAACGAAGGAGAAGCCAGAACCAGTGTTTTGCAGAATCTGCAATAAAAGATTCAGGAAAACTGATACTATGGTTAGACATTTGAATGTTCACAAGAGAGCAAATCCTAAGGAagttttttctatattaaaagagattcgagacaaaagaaaattagaaaataatacagaatACTCCGAAATGTCACTTCATCTCATTGTCAATAAGGATGAAATAATAGCACATgaagaaaaattgcaaaacGTAAAAGATAGCACAACGAGAGAATTAAGAAAACGTAACGTAAAAAGTGAACAGAGAGATTCGTTAAATAGCGATTCGAGTAATGACAAATTTAAGTCTTTTGACGATACATTGCTTTTTGACTGCAGATATTGCAACAAGCACTTTACTAACGAAAAAAGCCTTCAACGTCATCAGTcagtacataaaaaatttgtttgtaGCGTCTGCAACATGAAATTTTTCCGGCAGGATAGGCTTAAGAGTCACATGGATCGATATGGTCATGACGAGAGCAAAACATGTTCGGAGCCGCAGAGACCACCTGACGATAAATCGGCCATTAAGCTGATAAACAGTTGGATCAGGGAAGAATTGGATTCCGATAACGAGGGTAAGGGCTTTCCCTGTAAGATTTGTGGGAAATCGTACGACACAAAGAAGTCTTTATTAAAACATCAAATGAAGACACATGGTGGACAAGACGAATATTGCGCAAACTGCGGTGCAAGCAGCGTGTGTATTTGCGCGGATAAGTACAAAGATCGGGAAAAGAGTAATGAAAAGTTGAAGCTGTATACATGTGAGGAGTGTAACAAGTCATTCGAGAAGGAGATCAAATTGCAGAGGCATTTACGAATTCATGAGCGCGCCAAGGAGCAGCAGGACACGAATTTCAAACGTTTTCTCTGTCACATATGCAGCAAAACATTTCGGCAGAACACCGGTCTTATGTTTCATATGAGAACGCACACGGGTTACAAGCCGCATGTGTGTAAGTACTGCGGCCGTGGTTTCACGTCCAACTCAAATTGCATCAATCATGAGAGGACTCACACGGGCGATCGGCCGTTTGTCTGTCAATATTGCAGTGCGGCGTTCGCCAAGTCATGCACCCTCAAGGCCCACATCACCACGCACACCGGCGAGGCGAATTATCATTGTAAGACCTGCGGTAAATCGTTTCGCCGACTAAAGTATCTGAAAGAGCATAGATTCACGCACACAGGCGAGAAACCGTACGCATGCAAGATCTGTGGCACGGCTTACAGTCATTCCGGCAGCTTGTTTGTACACGAGAAGAAGTGCAAGGCGCAGTATAGCAATTATCAGTCGGAAACTGTGCAAAACGCGCAGCAACAAACTGCCTACTGCGGCCAGTCGCCCCAGACGACCATTTCCGGCGGCATTTCTTCAGTTACATCTCCTTCCTCGGTTATCGCGCCCATCATCACGACCACATTGCCTCAAGCTCATTTGAATATCATCAACAGCACCCTGAATGTACAGACGAACAAGGATTACATGGACGATATTCAGCGAATAAACGCACATGCAACGGGTACAGCGACTACGGTTGTTTCATCGGGCCTGCAACCAAACACTGACATTTCCGAAATGAATTCCACTGTGAGGAACTTTGCCATTATAGGACAAATgtttcatacataa
Protein Sequence
MQDDDEMSARANQDISLCRVCLTMNHCNQCIFRKNWNDPDSADTSELLSKKLQLCGGVEVQEDDGLPSSICTKCEMKINVAYELREQCQKADKELRKLYGIMLSANVTSNCILTKDQYCQTEQSFNLDTIKLEDNKELNMDNRDNIEKNIFMTESRNVMKHEQPDTFNQTENILVDNVPDLDCVNKCKQHDKIVIKEVHRTRRLTMFKRVTSMENLKNHKERQRRYIKKSTSVKRDINSEYQTNTKNNDSKIDTMSEYELRYKCPKCDRFYSSKRSLDRHTSTHDDKEFKCDNCDKQFFCLDKLHKHFNLHKTKEKPEPVFCRICNKRFRKTDTMVRHLNVHKRANPKEVFSILKEIRDKRKLENNTEYSEMSLHLIVNKDEIIAHEEKLQNVKDSTTRELRKRNVKSEQRDSLNSDSSNDKFKSFDDTLLFDCRYCNKHFTNEKSLQRHQSVHKKFVCSVCNMKFFRQDRLKSHMDRYGHDESKTCSEPQRPPDDKSAIKLINSWIREELDSDNEGKGFPCKICGKSYDTKKSLLKHQMKTHGGQDEYCANCGASSVCICADKYKDREKSNEKLKLYTCEECNKSFEKEIKLQRHLRIHERAKEQQDTNFKRFLCHICSKTFRQNTGLMFHMRTHTGYKPHVCKYCGRGFTSNSNCINHERTHTGDRPFVCQYCSAAFAKSCTLKAHITTHTGEANYHCKTCGKSFRRLKYLKEHRFTHTGEKPYACKICGTAYSHSGSLFVHEKKCKAQYSNYQSETVQNAQQQTAYCGQSPQTTISGGISSVTSPSSVIAPIITTTLPQAHLNIINSTLNVQTNKDYMDDIQRINAHATGTATTVVSSGLQPNTDISEMNSTVRNFAIIGQMFHT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00869076;
90% Identity
iTF_00869076;
80% Identity
-