Basic Information

Insect: Formica exsecta
Gene Symbol: -
Assembly: GCA_003651465.1
Location: NW:1925518-1934732[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 6.2e-05 0.0042 16.8 4.0 1 23 262 284 262 284 0.99

2 12 2 1.3e+02 2.6 7.7 1 23 289 311 289 311 0.95

3 12 0.00084 0.056 13.3 2.1 3 23 322 342 321 342 0.97

4 12 6.3e-05 0.0042 16.8 4.6 1 23 432 454 432 454 0.97

5 12 0.0004 0.027 14.3 1.3 1 22 457 478 457 481 0.91

6 12 8.4e-07 5.6e-05 22.7 1.6 1 23 520 543 520 543 0.97

7 12 1.6e-06 0.00011 21.8 1.0 1 23 578 600 578 600 0.99

8 12 0.00015 0.01 15.6 4.0 1 23 614 636 614 636 0.96

9 12 0.00014 0.0098 15.7 4.7 1 23 642 664 642 664 0.98

10 12 0.00023 0.015 15.1 1.4 1 23 670 692 670 692 0.98

11 12 4.4e-05 0.003 17.3 6.5 1 23 698 720 698 720 0.98

12 12 0.0002 0.014 15.2 0.3 1 21 726 746 726 747 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	6.2e-05	0.0042	16.8	4.0	1	23	262	284	262	284	0.99
2	12	2	1.3e+02	2.6	7.7	1	23	289	311	289	311	0.95
3	12	0.00084	0.056	13.3	2.1	3	23	322	342	321	342	0.97
4	12	6.3e-05	0.0042	16.8	4.6	1	23	432	454	432	454	0.97
5	12	0.0004	0.027	14.3	1.3	1	22	457	478	457	481	0.91
6	12	8.4e-07	5.6e-05	22.7	1.6	1	23	520	543	520	543	0.97
7	12	1.6e-06	0.00011	21.8	1.0	1	23	578	600	578	600	0.99
8	12	0.00015	0.01	15.6	4.0	1	23	614	636	614	636	0.96
9	12	0.00014	0.0098	15.7	4.7	1	23	642	664	642	664	0.98
10	12	0.00023	0.015	15.1	1.4	1	23	670	692	670	692	0.98
11	12	4.4e-05	0.003	17.3	6.5	1	23	698	720	698	720	0.98
12	12	0.0002	0.014	15.2	0.3	1	21	726	746	726	747	0.93

Sequence Information

Coding Sequence: ATGCAAGACGACGACGAAATGTCGGCGCGGGCAAATCAGGACATCAGTCTCTGCCGCGTCTGTCTGACTATGAATCACTGCAACCAGTGCATCTTCCGTAAAAATTGGAACGATCCAGATAGCGCGGACACATCCGAACTGCTCTCAAAGAAACTGCAATTGTGCGGTGGAGTGGAGgtTCAGGAAGACGATGGTTTACCTTCTAGCATCTGTACCAAGTgtgaaatgaaaattaatgttgCCTACGAATTGAGAGAACAATGCCAGAAAGCAGACAAGGAGCTTAGAAAACTCTATGGAATAACGTTGAGCACAAATGTTACTAGCAACTGTATTCTtacaaaagATCAATATTGTCAAACTGAGCAATCTTTTAACCTGGATACAATCAAGTTAGAGGACAATAAGGAATTAAATATGGATAATAGAGATAATATAGAGAAGAATATCTTTATGACAGAATCAAGGAATGTTATGAAACATGAACAACCAGATACTTTTAAtcaaacagaaaatattttagtagaTAATGTACCAGATTTAGATTGcgttaataaatgtaaacaacatgataaaattgttataaaagaaGTTCATAGAACGAGAAGACTAACTATGTTCAAAAGAGTTACATCTATGGAGAATTTGAAGAATCATAAAGAAAGACAAAGaagatatatcaaaaagaGCACAAGCGTTAAACGAGATATCAATAGCGAGTATCAAACAAAcacgaaaaatattgatagtaAAATAGATACAATGTCAGAATATGAATTGCGATATAAATGTTCAAAATGTGATAGATTTTATTCCAGTAAAAGGTCTTTAGATAGACACACATCAACTCATGATGATAAAGAGTTCAAATGTGATAACTgtgataaacaatttttctgtttGGATAAACTGCATAAGCATTTTAATCTGCACAAAACGAAGGAGAAGCCAGAACCAGTGTTTTGTAGAATCTGCAATAAAAGATTCAGGAAAACTGATACTATGGTTAGACATTTGAATGTTCACAAGAGAGCGAATCCTAAGGaagttttttctatattaaaagagattcgagacaaaagaaaattagaaaataatacagaatACTCCGAAATGTCACTTCATCTCGTTGTCAATAAGGATGAAATAATAGCACATGAAGAAAAATCGCAAAACTTAAAAGATAGCACAACGAGAGAATTAAGAAAACGTAACGTAAAAAGTGAACAGAGAGATTCGTTAAATAGCGATTCCAGTAATGACAAATTTAAGTCTTTTGACGATACATTGCTTTTTGACTGCAGATATTGCAGCAAGCACTTTACTAACGAAAAAAGCCTTCAACGTCATCAGtcagtacataaaaaatttgtttgtagCGTCTGCAACATGAAATTTTTCCGGCAGGATAGGCTTAAGAGTCACATGGATCGATATGGTCATGACGAGAGCAAAACATGTTCGGAGCCGCAGAGACCACCTGACGATAAATCGGCCATTAAGCTGATAAACAGTTGGATCAGGGAAGAATTGGATTCCGATAATGAGGGTAAGGGCTTTCCCTGTAAGATTTGTGGGAAATCGTACGACACAAAGAAGTctttattaaaacatcaaaTGAAGACACATGGTGGACAAGACGAATATTGCGCAAACTGCGGTGCAAGCAGCGTGTGTATTTGCGCGGATAAGTACAAAGATCGGGAAAAGAGTAATGAAAAGTTGAAGCTGTATACATGCGAGGAGTGTAACAAGTCATTCGAGAAGGAGATCAAATTGCAGAGGCATTTACGAATTCACGAGCGCGCCAAGGAGCAGCAGGACACGAATTTCAAACGTTTTCTCTGTCACATATGCAGCAAAACATTTCGGCAGAACACCGGTCTTATGTTTCATATGAGAACGCACACGGGTTACAAGCCGCATGTGTGTAAGTACTGCGGCCGTGGTTTCACGTCCAACTCAAATTGCATCAATCATGAGAGGACTCACACAGGCGATCGGCCGTTTGTCTGTCAATATTGCAGTGCGGCGTTCGCCAAGTCATGCACCCTCAAGGCCCACATCACCACGCACACCGGCGAGGCGAATTATCATTGTAAGACCTGCGGTAAATCGTTTCGCCGACTAAAGTATCTGAAAGAGCATAGATTCACGCACACAGGCGAGAAACCGTACGCATGCAAGATCTGTGGCACGGCTTACAGTCATTCCGGCAGCTTGTTTGTACATGAGAAGAAGTGCAAGGCGCAGTATAGCAATTATCAGTCGGAAACTGTGCAAAACGCGCAGCAACAAACTACCTACTGCAGCCAGTCGCCCCAGACGACCATTTCCGGCGGCATTTCTTCAGTTACATCTCCTTCCTCGGTTATCGCGCCCATCATCACGACCACATTGCCTCAAGCTCATTTGAATATCATCAACAGCACTCTGAATGTACAGACGAACAAGGATTACATGGACGATATTCAGCGAATAAACGCACATGCAACGGGTACAGCGACTACGGTTGTTTCATCGGATCTGCAACCAAACACTGACATTTCCGAAATGAATTCCAATGTGAGGAACTTTGCCATTATCGGGCAAATCAATATGCCTTCCTATAAGCTGACTTATTTTTCCGTTAAGGCTTTGGGTGAGCCAATTCGCTTCCTGCTCAGCTATGGTGGCACTGAATTCGTCGACGATCGTTTCGATAAGGAAGATTGGCCAAAAATTAAGCCGAcTACGCCATTTGGCCAAGTACCCGTACTCGAAGTAGACGGAAAGAAGATCGCTCAATCTACAGCTATCTCCCGCTACTTGGCAAAGCAATACGGTCTTGCCGGCAAAGACGATTGGGAATCTTTAGAAATCGACGTTACCGTCGATACTATACATGATGTACGCGCCAaaatcgCGGCTTATCATTATGAAAACAACGAAACTGTTAAAGAGGAGAAACTCAAAATCGCCAAGGAAACGGTGCCGTTCTATCTGGAGCGTTTGAATGCTCAGGTGCAGAAGAATGGCGGGTACTTCGTCGGCGGTGCTCTAACCTGGGCCGATCTCACTTTTGTCGCTCTACTGGACTATCTAAACTTTATGATGGAGGAGAATATAAtcgagaaatatgaaaatctgAAACAGCTGAAGCAAAAGGTCGAGGAGATACCGGCTATCAAGAGTTGGATTGAGAAGCGTCCGCCGAGTGCTCTGTAA
Protein Sequence: MQDDDEMSARANQDISLCRVCLTMNHCNQCIFRKNWNDPDSADTSELLSKKLQLCGGVEVQEDDGLPSSICTKCEMKINVAYELREQCQKADKELRKLYGITLSTNVTSNCILTKDQYCQTEQSFNLDTIKLEDNKELNMDNRDNIEKNIFMTESRNVMKHEQPDTFNQTENILVDNVPDLDCVNKCKQHDKIVIKEVHRTRRLTMFKRVTSMENLKNHKERQRRYIKKSTSVKRDINSEYQTNTKNIDSKIDTMSEYELRYKCSKCDRFYSSKRSLDRHTSTHDDKEFKCDNCDKQFFCLDKLHKHFNLHKTKEKPEPVFCRICNKRFRKTDTMVRHLNVHKRANPKEVFSILKEIRDKRKLENNTEYSEMSLHLVVNKDEIIAHEEKSQNLKDSTTRELRKRNVKSEQRDSLNSDSSNDKFKSFDDTLLFDCRYCSKHFTNEKSLQRHQSVHKKFVCSVCNMKFFRQDRLKSHMDRYGHDESKTCSEPQRPPDDKSAIKLINSWIREELDSDNEGKGFPCKICGKSYDTKKSLLKHQMKTHGGQDEYCANCGASSVCICADKYKDREKSNEKLKLYTCEECNKSFEKEIKLQRHLRIHERAKEQQDTNFKRFLCHICSKTFRQNTGLMFHMRTHTGYKPHVCKYCGRGFTSNSNCINHERTHTGDRPFVCQYCSAAFAKSCTLKAHITTHTGEANYHCKTCGKSFRRLKYLKEHRFTHTGEKPYACKICGTAYSHSGSLFVHEKKCKAQYSNYQSETVQNAQQQTTYCSQSPQTTISGGISSVTSPSSVIAPIITTTLPQAHLNIINSTLNVQTNKDYMDDIQRINAHATGTATTVVSSDLQPNTDISEMNSNVRNFAIIGQINMPSYKLTYFSVKALGEPIRFLLSYGGTEFVDDRFDKEDWPKIKPTTPFGQVPVLEVDGKKIAQSTAISRYLAKQYGLAGKDDWESLEIDVTVDTIHDVRAKIAAYHYENNETVKEEKLKIAKETVPFYLERLNAQVQKNGGYFVGGALTWADLTFVALLDYLNFMMEENIIEKYENLKQLKQKVEEIPAIKSWIEKRPPSAL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00869076;
90% Identity: iTF_00869076;
80% Identity: -