Basic Information

Insect: Anoplolepis gracilipes
Gene Symbol: -
Assembly: GCA_031304115.1
Location: JAPWJP010000994.1:670682-673445[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 1.2e-05 0.0021 19.6 3.1 1 23 261 283 261 283 0.99

2 12 2.3 4.3e+02 3.0 7.7 1 23 288 310 288 310 0.95

3 12 0.0004 0.072 14.8 1.8 3 23 321 341 320 341 0.97

4 12 8.2e-06 0.0015 20.1 2.9 1 23 431 453 431 453 0.97

5 12 0.00047 0.085 14.6 1.3 1 22 456 477 456 480 0.91

6 12 9.8e-07 0.00018 23.0 1.6 1 23 519 542 519 542 0.97

7 12 1.9e-06 0.00034 22.2 1.0 1 23 577 599 577 599 0.99

8 12 0.00018 0.033 15.9 4.0 1 23 613 635 613 635 0.96

9 12 0.00017 0.031 16.0 4.7 1 23 641 663 641 663 0.98

10 12 0.00027 0.049 15.4 1.4 1 23 669 691 669 691 0.98

11 12 5.2e-05 0.0094 17.6 6.5 1 23 697 719 697 719 0.98

12 12 0.00024 0.044 15.5 0.3 1 21 725 745 725 746 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	1.2e-05	0.0021	19.6	3.1	1	23	261	283	261	283	0.99
2	12	2.3	4.3e+02	3.0	7.7	1	23	288	310	288	310	0.95
3	12	0.0004	0.072	14.8	1.8	3	23	321	341	320	341	0.97
4	12	8.2e-06	0.0015	20.1	2.9	1	23	431	453	431	453	0.97
5	12	0.00047	0.085	14.6	1.3	1	22	456	477	456	480	0.91
6	12	9.8e-07	0.00018	23.0	1.6	1	23	519	542	519	542	0.97
7	12	1.9e-06	0.00034	22.2	1.0	1	23	577	599	577	599	0.99
8	12	0.00018	0.033	15.9	4.0	1	23	613	635	613	635	0.96
9	12	0.00017	0.031	16.0	4.7	1	23	641	663	641	663	0.98
10	12	0.00027	0.049	15.4	1.4	1	23	669	691	669	691	0.98
11	12	5.2e-05	0.0094	17.6	6.5	1	23	697	719	697	719	0.98
12	12	0.00024	0.044	15.5	0.3	1	21	725	745	725	746	0.93

Sequence Information

Coding Sequence: ATGCAAGACGACGACGAAATGTTGACGCGGGCAAATCAGGACACCAGTCTCTGCCGCGTCTGTCTGACTATGAATCATTACAATCAGTGCATCTTTCGCAAAAATTGGAACGATTCAGATAACGCGAGTACATCTGAACTTCTCTCGAAGAAATTGCAATTATGCGGTGGGGTGGAGGTTCAGGAAGACGATGGTTTGCCTTCTAACATCTGTACCAAAtgtgaaaacaaaattaatgttgCCTATGAATTAAGGGAACAATGCCAGAAAGCAGACAAGGAGCTTAGAAAGCTTTATGGAATAACGTTGAACACAAATAACACTGGCAATTTTAATCCtacaaaaGATCAATATTGTCAAACCGAGCAATCTTTTATTCTGGATACAATCAAATTAGAGGACAATAAGGAATTAAGTATggataatagaattaatatagagaaaaatatctttatgatGGAATCAAGGAATGTTATGAAACATGAACAACCGGATGCTTTTAATCAAATAGAAAGTATTCTAATAGATAATGTACCAGATTTAgattgcattaataaatgtaaacaacatgataaaatagttataaagGAAGTTCATAGAACAAGAAGACTAACTATGTTCAAAAGAGTTACATCTatagaaaatttgaagaatcataaagaaagacagagaagATATATCAAAAAGAGTACAAGCATTAAACGAGATATTAGCAATAGTGAGTATCAaacaaaaacgaaaaatattgatagaatGGATACGTCAGAATTtgaattgcaatataaatgtCCAAAATGTGATAGATTTTATTCCAGTAAAAAGTCTTTAGATAGACATACGTCAACTCATGATGATAAAGAGTTCAAATGTGATAACTgtgataaacaatttttctgtTTGGATAAACTGCataagcattttaatttacacaaaACAAAGGAGAAGCCAGAACCAGTGTTTTGCAGAATCtgcaataaaagttttaggaAAACTGATACTATGGTTAGACATTTGAATGTCCACAAGAGAGCGAATCCTAAGGAAGTTTTCTCTATATTAAAAGAGATACgagacaaaagaaaattagaaaataatccaGAAATCTCTGAAATGTCACTGCCTGTGATGGTGAATAAGGATGAAGCAATAGTGGATGATGGCAAATTGCAAAGCGAAAAAGAGGGCCCAACGAGAGAACTAAggaaacgtaatttaaaaactgaGCAGAGAGATTCGTTAAATAGCGATTCGAGTGATGACAAATTTAAGTCTTTCGATGATACGTTGTTCTTTGACTGCAAATATTGCAGCAAACGCTTTAATAACGAAAAGAGCCTTCAACGTCATCAGTCAGTACATAAACAATTCGTTTGTAGCGTCTGTAACATGAAATTTTTCCGACAGGATAGGCTTAAGAGTCACATGGATCGATATGGTCATGATGAGAGCAAAACATGCTCGGAGCCGCAGAAACCACCTGACGATAAATCGGCCATTAAGTTGATAAACAGTTGGATCAGGGAAGAATTGGATTCCGATAACGAAGGCAAAGGCTTTCCCTGCAAGATCTGTGGAAAATCGTACGACACAAAGAAGTCTCTATTAAAACATCAAATGAAAACACATGGCGGACAAGACGAGTATTGCGCAAATTGCGGTGCAAGTGGCGTATGTATTTGCGCGGATAAGTATAAAGATCAGGAAAAAAGTAGCGAAAAGTTGAAGCTGTATACGTGCGAGGAGTGTAACAAGTCGTTCGAGAAGGAGATCAAGCTACAGAGGCATCTGCGAATTCACGAACGCGCCAAGGAACAGCAGGATACGAATTTCAAACGTTTCCTCTGTCATATATGCAGCAAAACGTTCCGGCAAAACACCGGTCTCATGTTTCACATGAGAACGCACACGGGTTACAAGCCGCACGTGTGCAAGTACTGCGGCCGTGGTTTCACGTCCAATTCGAACTGCATCAATCATGAGAGGACTCACACAGGCGATCGGCCGTTTGTCTGTCAGTATTGCAGCGCGGCTTTCGCCAAGTCGTGCACCCTCAAGGCTCACATCACCACGCACACTGGCGAGGCGAATTATCATTGTAAGACTTGTGGCAAATCGTTCCGCCGGCTAAAGTATCTCAAGGAGCATAGATTTACACACACGGGCGAGAAACCGTACGCATGCAAGATCTGTGGCACGGCTTACAGTCATTCCGGCAGCTTGTTCGTGCACGAGAAGAAGTGCAAGGCACAGTATAGCAATTATCAATCGGGAACCGTGCAAAACCCGCAGCAACAGACCACCTACTGCGGCCAGTCACCTCAGACGATTATTTCCGGCGGTATTTCTTCCGCGACATCTCCTTCCTCGGTTATCGCGCCCATCATCGCGACCACATTGCCTCAAGCTCATCTGAACGTCATTAACAGCACTCTGAATGTACAGACGAACAAGGGTTACATGGACGATATTCAGCGAATAAACGCGCATGCAACGGGTACGGCGACTGCGGTTGTCTCATCGGGTCTGCAACCGAACACTGACATTTCCGACATGAATTCCACTGTTAGGAACTTTGCTATTATCGGGCAAATGTTTCATACATAA
Protein Sequence: MQDDDEMLTRANQDTSLCRVCLTMNHYNQCIFRKNWNDSDNASTSELLSKKLQLCGGVEVQEDDGLPSNICTKCENKINVAYELREQCQKADKELRKLYGITLNTNNTGNFNPTKDQYCQTEQSFILDTIKLEDNKELSMDNRINIEKNIFMMESRNVMKHEQPDAFNQIESILIDNVPDLDCINKCKQHDKIVIKEVHRTRRLTMFKRVTSIENLKNHKERQRRYIKKSTSIKRDISNSEYQTKTKNIDRMDTSEFELQYKCPKCDRFYSSKKSLDRHTSTHDDKEFKCDNCDKQFFCLDKLHKHFNLHKTKEKPEPVFCRICNKSFRKTDTMVRHLNVHKRANPKEVFSILKEIRDKRKLENNPEISEMSLPVMVNKDEAIVDDGKLQSEKEGPTRELRKRNLKTEQRDSLNSDSSDDKFKSFDDTLFFDCKYCSKRFNNEKSLQRHQSVHKQFVCSVCNMKFFRQDRLKSHMDRYGHDESKTCSEPQKPPDDKSAIKLINSWIREELDSDNEGKGFPCKICGKSYDTKKSLLKHQMKTHGGQDEYCANCGASGVCICADKYKDQEKSSEKLKLYTCEECNKSFEKEIKLQRHLRIHERAKEQQDTNFKRFLCHICSKTFRQNTGLMFHMRTHTGYKPHVCKYCGRGFTSNSNCINHERTHTGDRPFVCQYCSAAFAKSCTLKAHITTHTGEANYHCKTCGKSFRRLKYLKEHRFTHTGEKPYACKICGTAYSHSGSLFVHEKKCKAQYSNYQSGTVQNPQQQTTYCGQSPQTIISGGISSATSPSSVIAPIIATTLPQAHLNVINSTLNVQTNKGYMDDIQRINAHATGTATAVVSSGLQPNTDISDMNSTVRNFAIIGQMFHT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00869076;
90% Identity: iTF_00869076;
80% Identity: -