Cfel017036.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Camponotus fellah
Gene Symbol
-
Assembly
GCA_030586385.1
Location
JAPIVC010000384.1:2024826-2027584[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 2.1e-06 0.00043 22.0 3.6 1 23 265 287 265 287 0.99
2 12 9.1 1.9e+03 1.1 5.7 1 23 292 314 292 314 0.77
3 12 0.00095 0.2 13.6 1.7 3 23 325 345 324 345 0.96
4 12 2.3e-06 0.00048 21.9 1.2 1 23 433 455 433 455 0.97
5 12 0.00069 0.14 14.1 1.9 1 22 458 479 458 482 0.91
6 12 9.8e-07 0.0002 23.0 1.6 1 23 521 544 521 544 0.97
7 12 1.8e-06 0.00038 22.2 1.0 1 23 579 601 579 601 0.99
8 12 0.00018 0.037 15.9 4.0 1 23 615 637 615 637 0.96
9 12 0.00017 0.035 16.0 4.7 1 23 643 665 643 665 0.98
10 12 0.00027 0.055 15.4 1.4 1 23 671 693 671 693 0.98
11 12 5.1e-05 0.011 17.6 6.5 1 23 699 721 699 721 0.98
12 12 0.00024 0.05 15.5 0.3 1 21 727 747 727 748 0.93

Sequence Information

Coding Sequence
ATGTCGATGCAAGACGACTGCGAAATGTTGACGCGGGCAAATCAGGACAGTCTCTGCCGCGTCTGTCTGACTATGAATCAGTACAACCAGTGCATCTTTCGCAAAAATTGGAACGATCTGAACAGCACGGATGCATCCGAACTCCTCTCGAAGAAACTGCAGTTGTGCGGTGGAGTGGAGGTTCAGGAAGACGATGGCTTGCCTTCTAGCATCTGTACCaagtgtgaaaaaaaaattaatgtcgcCTATGAATTAAGAGAACAATGCCAGAAAGCAGACAAGGAGCTTAGAAAACTCTATGGAATATCATTGAGCACAAGTGTTATTAGCAACTTTGTTTCtacaaaaGATCAGTATTCTCAAACCGAGCAATCTTTCATTCTGGATACAATCAAGTTAGAGAACAAAAATAaggaattgaatataaataatagaattaatacagAGGAGAATATCTTTATGACagaatcaaaaaatgatatgaaaCATGAACAACCAGATACTTTTAATCAAACAGAGAATATTCTAGTAGATAATGTATCAGATTTAGATtccattaataaatgtaaacaacatgataaaatagttataaagGAAATTCATAGACCGAGAAGACTAACTATGTTCAAAAGAGTTACATCTATAGAGAATTTGAAGAATCATAAAGAAAGACAGAGGAGATATATTAAGAAGAGCACAAATGTTAAACGAGATATCAACAATAGTGAGTATcaatcaaaaatgaaaaatattgatagtaGAATAGATACAATGTCAGAACTTGAATTGCGATATAAATGTCCAAAATGTGATAGATTTTATTCCAATAAAAGGTCTTTAAATAGACATACGTCAACTCATGATGATAAAGAGTTCAAATGTGATAACTGTGATAAACAATTTCTTTGTTTGGATAAATTGCATaagcattttaatttacataagatGAAGGAGAAGCCAGAACCAGTATTTTGcagaatctgtaataaaagttttagaaaAACCGATACTATGGTTAGACATTTGAATGCTCATAAAAGAGCGAATCCTAGAGAAGTTTTCTctatattaaaagagatacgagacaaaagaaaattggaaaataatctAGAGTTCTCTGAAATACCGCTTCACGTCATGGTGAATAAGGATGAAGCGTATGATGAAAAGTcacaaaatgaaaaagatggCACAACGAGAGAACTAAGAAaacgtaatgtaaaaattgagcAGAGAGATTCATTAAATAGCGATTcaagtaatgaaaaatttaaatctgttGATGATACATTACTCTTTGACTGCGAATATTGCAGCAAGAGTTTTACTAATGAAAAAGGACTTCAACGTCATCAAtcagtacataaaaaatttgtttgtagTGTTTGCAACATGAAATTTTTCCGACAGGACAGGCTTAAAAGTCACATGGATCGATATAATCATGACGAGAACAAAACATCTTCGGAGCCGCAGAAACCACCTGACGATAAATCTGCCATTAAGCTGATAAACAGTTGGATCAGGGAAGAATTGGATTCCGATAACGAGGGTAAGGGCTTTCCCTGTAAGATCTGTGGAAAATCGTACGACACAAAGAAGTCTTTACTAAAGCATCAAATGAAGACACATGGCGCACAAGACGAGTATTGCGCAAATTGTGGTGCAAGCAGCGTGTGTATTTGCGCGGATAAATACAAAGATCgagaaaaaagtaacgaaaagtCGAAGTCGTATACATGCGAGGAGTGCAACAAATCCTTCGAGAAGGAGATTAAGTTACAGAGACACCTGCGAATTCACGAGCGCGCCAAGGAGCAGCAGGACGCGAATTTTAAACGTTTCCTCTGTCACATATGCAGCAAAACGTTCCGACAAAACACCGGTCTCATGTTTCACATGAGAACGCACACGGGTTACAAGCCTCACGTGTGTAAGTACTGCGGCCGTGGTTTCACTTCCAACTCGAACTGCATCAATCATGAGAGGACTCACACGGGCGATCGGCCATTCGTCTGTCAGTATTGCAGTGCGGCGTTTGCCAAGTCATGCACCCTCAAGGCCCACATTACCACGCACACCGGCGAGGCGAATTATCATTGTAAGACCTGCGGTAAATCATTCCGCCGATTGAAGTATCTAAAGGAGCATAGATTCACGCACACGGGCGAGAAACCGTACGCGTGTAAGATCTGTGGCACGGCTTACAGTCATTCCGGCAGCTTGTTTGTGCACGAGAAGAAGTGCAAGGCACAGTATAACAATTATCAATCGGGAACTGTGCAAAACGCGCAGCAACAGACTTACTGCGGTCAGTCGCCTCAGACGAACATTTCTAGTGGCATTTCTTCGGTAACGTCTTCTTCCTCGGTTATCACGCCTATCATCACGACTACATTGCCTCAAGCTCATCTGAACGTCATCAACAGCACTCTGAATGTACAGACGAACAAGGATTACATGGATGATATTCAACGAATAAATGCGCATGCAACAGGTACAGCGGCTACGGTTGTCTCATCGGGTCTTCAACTGAATACTGACATTTCTGAAATGAATTCCACTGTTAGGAACTTTGCCATTATCGGACAAATGTTTCATACATAA
Protein Sequence
MSMQDDCEMLTRANQDSLCRVCLTMNQYNQCIFRKNWNDLNSTDASELLSKKLQLCGGVEVQEDDGLPSSICTKCEKKINVAYELREQCQKADKELRKLYGISLSTSVISNFVSTKDQYSQTEQSFILDTIKLENKNKELNINNRINTEENIFMTESKNDMKHEQPDTFNQTENILVDNVSDLDSINKCKQHDKIVIKEIHRPRRLTMFKRVTSIENLKNHKERQRRYIKKSTNVKRDINNSEYQSKMKNIDSRIDTMSELELRYKCPKCDRFYSNKRSLNRHTSTHDDKEFKCDNCDKQFLCLDKLHKHFNLHKMKEKPEPVFCRICNKSFRKTDTMVRHLNAHKRANPREVFSILKEIRDKRKLENNLEFSEIPLHVMVNKDEAYDEKSQNEKDGTTRELRKRNVKIEQRDSLNSDSSNEKFKSVDDTLLFDCEYCSKSFTNEKGLQRHQSVHKKFVCSVCNMKFFRQDRLKSHMDRYNHDENKTSSEPQKPPDDKSAIKLINSWIREELDSDNEGKGFPCKICGKSYDTKKSLLKHQMKTHGAQDEYCANCGASSVCICADKYKDREKSNEKSKSYTCEECNKSFEKEIKLQRHLRIHERAKEQQDANFKRFLCHICSKTFRQNTGLMFHMRTHTGYKPHVCKYCGRGFTSNSNCINHERTHTGDRPFVCQYCSAAFAKSCTLKAHITTHTGEANYHCKTCGKSFRRLKYLKEHRFTHTGEKPYACKICGTAYSHSGSLFVHEKKCKAQYNNYQSGTVQNAQQQTYCGQSPQTNISSGISSVTSSSSVITPIITTTLPQAHLNVINSTLNVQTNKDYMDDIQRINAHATGTAATVVSSGLQLNTDISEMNSTVRNFAIIGQMFHT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00869076;
90% Identity
iTF_00869076;
80% Identity
-