Lpop031712.1
Basic Information
- Insect
- Laothoe populi
- Gene Symbol
- -
- Assembly
- GCA_905220505.1
- Location
- HG992174.1:6620638-6622953[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 4.5e-06 0.00042 21.6 4.2 1 23 6 29 6 29 0.95 2 20 0.001 0.097 14.1 0.5 2 23 35 57 34 57 0.94 3 20 3.2e-05 0.0031 18.9 0.2 2 23 66 88 66 88 0.97 4 20 9e-06 0.00085 20.6 1.3 2 23 97 119 96 119 0.93 5 20 6.4e-05 0.0061 17.9 1.0 2 23 127 149 127 149 0.95 6 20 3.5e-05 0.0033 18.7 1.1 2 23 157 179 156 179 0.94 7 20 4.7e-07 4.5e-05 24.6 1.3 1 23 185 208 185 208 0.98 8 20 0.11 11 7.7 0.7 2 23 217 239 217 239 0.95 9 20 1.5e-05 0.0014 19.9 0.4 1 23 248 271 248 271 0.97 10 20 0.00063 0.06 14.8 0.1 1 23 297 320 297 320 0.96 11 20 0.59 56 5.4 0.6 2 21 328 347 327 348 0.91 12 20 3.6 3.4e+02 3.0 1.5 3 23 358 379 357 379 0.91 13 20 0.00027 0.026 16.0 6.0 1 23 401 424 401 424 0.97 14 20 1.1e-05 0.001 20.3 0.6 2 23 431 453 430 453 0.96 15 20 6.9e-05 0.0065 17.8 1.6 2 23 460 482 459 482 0.94 16 20 0.0079 0.75 11.3 2.2 1 23 488 511 488 511 0.97 17 20 0.25 23 6.6 4.8 2 23 519 541 519 541 0.95 18 20 3.6e-05 0.0034 18.7 0.1 1 23 548 571 548 571 0.97 19 20 0.1 9.8 7.8 5.4 1 23 578 601 578 601 0.93 20 20 0.041 3.8 9.1 2.8 5 23 618 637 615 637 0.90
Sequence Information
- Coding Sequence
- atgaGTTTACAAGACTTTGTATGTGATTACTGCAGTAGAACATTCACCAGGAAATACAATCTTCAAACGCATATAGAAAATTGTCATGTAAAATCGTCATGTTTTTGTGACATTTGCGAGAAGAAGTTTGGTAGTCCGGCAGGCTTGCAGCTCCACTTATCTCGTGGACATAACAGATTCGGCCAACCGTTCCCAGAATGCGACTTATGTGGTCGTATATTCACGAGAAAACAGAATATCATGTCGCACATGATCACCGCACATTTGCATGGAGTAGGCCCGGAGATACGGTGTGATTTATGCAACAAAACGTTTACGACTGAAAGAAATCTGAAACGGCATGTCAGTCAGTTACACAATCCTGATGTGGAGTACCCAACTTGTGACGATTGCCATAAAGTGTTCAAGGGAAAACAGTCTCTAATAACCCATATACAAGCACTACATAACCCTGGCAAGGGTCAAATAAGCTGCCGTTTATGTAATAAAGTCTACACAAATAACAGAAACTTGAAGAGGCATGTTGAGATGTTCCATGGGGAGAGAGGGGAGTACAGATGTGATATTTGCCCTAAAATATATACGTCCAATCAAAGTTTGAGACGCCATTTGCGTACAAGACATAATTCTGACGATCAAGAATCTGGACAATGtgtgttttgtaataaaattatacatggGAAAGATAATTTGGAGAGTCACATACAGCTTTATCATTCCCAAGATGATGGTAAAGTGAGTTTTTCATGTGAATGGTGTAATAAAAGTTTCAACGAAGAAGTGTTGTTACGAAGACATATTAAAAGTGATCACTCATTCAAATCGTTTTATAAATACTGCAAGCAGTCGTTAATAAGACAGATGTCGGAATCTCGGAAGAAGTTTCtatataattgtgaattttgtcCAAACGCTTTTGCAAGTGTTTATGAATTGAAGGATCATATGAGAGGAAGTCATGACACAGAGTATATACTTTCCACATGTAATGTATGCTTTGAGAAGTTCTACAGTAACGCGACAATGGCGTATCATAAGAAGTTTTGTGTCCCACCACCTAATGTGAACTCTTGCATTCATTGTGACAAATTATTCACTGTTATATCCAGCCTTGAATTTCACACAAGGATATTCCATCCGCAATCACAAATAGCTGATTCCAACATAACTTCAACCAATGACGATACGGATATCGGCTATTTTAAATGCAACCACTGTGACAGAGTTTACTACAGTGAACGGTCTTTAAAACACCACATTAAGCTAAAACACACCACTGATGAAGCAATGGAATGTGAATACTGTGGGAAAATATGCAGCAATAAATACTACCTCGCTTCTCATATCAAAATTGTACATAGCAACAACTCATGGTCCAAATGCGACTATTGTGAGAAGATATTTAAATCCAAAAGGAATATTCGACGACACATAGAGTACACGCATTTGGGCATGCAGAGATACAAGTGTATAGAATGTGAGACACTGTTCAAAGAGAAACGGAGTTTAAGAAAGCATGTGCGCACTAAACATCCAAACTCTGCCTCGTTTCCGCAATGTCATATATGTTACAAAAGATTCGAATCTGCAAAGTCTTGTAAGATACATTTGAAATTGTTGCATTCGTTCAATATGAACACATTTCCGTGCGATTTGTGTCCCGTCTCGTTTAATTCTAAGGAAGCACTGACTATACATCTACAGACAAAACATTTAGCTGAAGACGAGATTTACAAATGCGAAGAGTGCAACTTAGTTTTCAAAGGCCATGAGAAGTTTGAGCACCATAACGAAGTATGCCATGTTAGCTTACTTCCAAACATAAAACAGAAAGTACTCCCTCGTTGTATACTTTGCATGAAAGATTTTAGTACAAGGAAGACCTTAAAACGGCATATCAAGAAGTTCCATGAAGGATTTGATGTGGATGAGCTAGCCACTTTCGGGTCGAAACGAAGGACATTCAATATTGATTGTGAAGGATGTATCAAGAATTTCGGCGATGATTATTACTACCATATATATAACAAGTTGAAACATTTAAGAGATTCCATAATTTTCAAGTGTGAGGAATGTAAAGATTCGTATAATTCCTTGGAATATTCAATACAAAGGTATAAGTTGTTAAATATGGATGCGTGTAAGGGTAAAATGATTTTGAGCGAGCTGTGTACTACAGAAATGAGCGATGACGAAGCTTCGTTTTCTGGTTTTGGATCGCTCCATGAGTTTGTTGAGCCCGTGAGCACAACAATGGATATTAAATCAGAGTTTATGGTAGACTGTGAAATCAAGACTGAACCTTTATCACCATGA
- Protein Sequence
- MSLQDFVCDYCSRTFTRKYNLQTHIENCHVKSSCFCDICEKKFGSPAGLQLHLSRGHNRFGQPFPECDLCGRIFTRKQNIMSHMITAHLHGVGPEIRCDLCNKTFTTERNLKRHVSQLHNPDVEYPTCDDCHKVFKGKQSLITHIQALHNPGKGQISCRLCNKVYTNNRNLKRHVEMFHGERGEYRCDICPKIYTSNQSLRRHLRTRHNSDDQESGQCVFCNKIIHGKDNLESHIQLYHSQDDGKVSFSCEWCNKSFNEEVLLRRHIKSDHSFKSFYKYCKQSLIRQMSESRKKFLYNCEFCPNAFASVYELKDHMRGSHDTEYILSTCNVCFEKFYSNATMAYHKKFCVPPPNVNSCIHCDKLFTVISSLEFHTRIFHPQSQIADSNITSTNDDTDIGYFKCNHCDRVYYSERSLKHHIKLKHTTDEAMECEYCGKICSNKYYLASHIKIVHSNNSWSKCDYCEKIFKSKRNIRRHIEYTHLGMQRYKCIECETLFKEKRSLRKHVRTKHPNSASFPQCHICYKRFESAKSCKIHLKLLHSFNMNTFPCDLCPVSFNSKEALTIHLQTKHLAEDEIYKCEECNLVFKGHEKFEHHNEVCHVSLLPNIKQKVLPRCILCMKDFSTRKTLKRHIKKFHEGFDVDELATFGSKRRTFNIDCEGCIKNFGDDYYYHIYNKLKHLRDSIIFKCEECKDSYNSLEYSIQRYKLLNMDACKGKMILSELCTTEMSDDEASFSGFGSLHEFVEPVSTTMDIKSEFMVDCEIKTEPLSP*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00858764; iTF_00787858; iTF_00429218; iTF_00429228; iTF_00819372; iTF_00428333; iTF_00820302; iTF_00428344; iTF_00787865; iTF_00819387; iTF_00063789; iTF_01010599; iTF_00859694; iTF_01359057; iTF_01359066; iTF_00341527;
- 90% Identity
- iTF_00858764;
- 80% Identity
- iTF_00858764;