Ajug020958.1
Basic Information
- Insect
- Amorpha juglandis
- Gene Symbol
- -
- Assembly
- GCA_949126905.1
- Location
- OX421392.1:4947785-4950100[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 3.9e-06 0.00025 21.7 3.6 1 23 6 29 6 29 0.95 2 20 0.0062 0.39 11.7 2.2 2 23 35 57 34 57 0.91 3 20 9.3e-06 0.00059 20.6 0.3 2 23 66 88 66 88 0.96 4 20 1.1e-05 0.00071 20.3 1.3 2 23 97 119 96 119 0.92 5 20 1.5e-05 0.00096 19.9 1.2 2 23 127 149 127 149 0.96 6 20 6e-06 0.00038 21.2 2.3 2 23 157 179 156 179 0.95 7 20 4.8e-07 3e-05 24.6 1.3 1 23 185 208 185 208 0.98 8 20 0.00015 0.0093 16.8 0.5 1 23 249 272 249 272 0.96 9 20 0.0011 0.068 14.1 1.8 1 23 298 321 298 321 0.97 10 20 3.2 2e+02 3.1 2.2 2 21 329 348 328 349 0.92 11 20 0.0067 0.42 11.6 3.1 1 23 357 380 357 380 0.96 12 20 0.00037 0.023 15.5 6.2 1 23 401 424 401 424 0.97 13 20 1.5e-05 0.00098 19.9 0.9 2 23 431 453 430 453 0.96 14 20 0.00013 0.0082 17.0 1.9 2 23 460 482 459 482 0.94 15 20 0.008 0.5 11.3 2.2 1 23 488 511 488 511 0.97 16 20 0.25 16 6.6 4.8 2 23 519 541 519 541 0.95 17 20 2.7e-05 0.0017 19.1 0.1 1 23 548 571 548 571 0.97 18 20 0.0053 0.34 11.9 1.9 1 23 578 601 578 601 0.91 19 20 0.045 2.8 9.0 2.2 6 23 619 637 615 637 0.89 20 20 1.7 1e+02 4.0 0.4 1 11 687 697 687 700 0.90
Sequence Information
- Coding Sequence
- ATGAATTTACTTGACTACGTCTGTGATTACTGTAGTAGATCATTCACCAGGAAGTACAATCTTCAAATGCATATAGAAAACTGTCATATCAACACCTCATGCTTTTGTGATATCTGTAAGAAAAAATTTGGCAGTCCGGCTGGTTTACAACTGCATCTTACCCACGGCCATAACAGTTTCGGCCAACCGTTCCCAGAATGTGATATATGTGGGCGTGTGTTCACGAGGAAACAGAATATCGTATCACACATGACCACAGTACATCTGCAAGGAGTAGGGCCAGAGATACGGTGTGAATTGTGCAACAAAACGTTTACAACTGAACGGAATTTGAAACGTCATGTAACACAGCTGCACAACCCTGATGTCGAGTACCCGACATGTAACGATTGTCACAAAGTATTCAGAGGAAAGCAATCATTAATTGCTCACATACAATCGTTACACAATTCTGCTAAAGGACAGATACGCTGTCATTTATGTGATAAAGTCTACACAAATAATAGAAACTTGAAAAGACATGTAGAGATGTTCCACGGAGAGAGAGGGGAGTACCGGTGTGATATTTGTCCAAAAATTTATACATCCAATCAAAGCTTGAGACGTCATTTGCGAACGAGACATAGCTGCGACGACCGAGAGTCGATACAGTgtagattttgcaataaaattatatatggtAAAGATAATTTGGACTGCCATGTACAACTGTACCATTTCAAAAATGAAAACAGGAGCATGATTTTCTCTTGCGAATGGTGTAATAAGAGTTTTAAAGAAGAAGTGTTATTACGAACACACGTCAAGAACGATCATTCGTTCAAATCGTTTTATAAGTATTGCAAGCAGTCCTTGTTACGACAAATGACCGAATCACGAAAAAAGTCCTTATACAGTTGTGAGTTTTGTTCGAACTCCTTCGCAAGTGTTTACGAATTGAAAGATCATATGCGAGGTTGCCACGATAAGGACTACATCCTTTCTACATGCAATGTGTGCTTTGGGAAGTTTTATAGTAAAGAAACAATGTCACACCACAAGAAGTATTGCCTGCCACCGCCCAACGTATTTACTTGCACTCACTGCGATAAACTATTCACTGTTTTATCAAGCTTGGAGTTTCACACCAGGATATTCCACCCGCAGTCACAGATCGCAGATTCGAACATAACATCAACTAATGATGCAGACATTGGCTACTTTAAGTGTACACATTGTGATAGAGTTTATTACAGCGAGCGATCTCTGAAACACCATATTAAGCTGAAACACACGACAGACGTCGCCATGGAGTGTCAATATTGTGGAAAGATATGCAGTAATAAGTATTACCTCGCTTCGCATATAAAAATAGTTCATAGTAATACGTCATGGTCGAAATGTGATTACTGcgacaaattatttaaatcaaaacgGAATATTCGCCGCCATATTGAATACACGCATCTAGGGATGCAAAGATACAAGTGTATAGAGTGCGAAACGCTTTTCAAAGAGAAACGCAGTTTGCGGAAACATGTTCGTACCAAACATCCGAACTCGGCGACGTTTCCGCAGTGTCATATATGTTACAAGCGATTCGAGTCGGCGAAGTCatgtaaaatacatttgaaGTTGCTTCACTCGTTCAATATGAACACTTTTCCTTGTGATTTGTGTCCGATATCGTTCAGTTCGAAGGAGGCGTTGTCCATACATCTGCAGACGAAACATTTAGCCGAAGACGAAATTTACAAATGCGAAGAATGTAATCTAGTATTCAAAGGACAAGAGAAATTCGAGCAACATAATGACGTATGCCATGTTAGTTTGCTGCCTAACATAAAACAGAAAGTCCTGCCTCGTTGTATATTGTGTATAAAAGATTTCAGTACCCGCAAAACTTTGAAACGTCATATCAAAAAATTCCACGAGGGATTTGATGTGGATGAGTTGGCAACATTTGGTTCGAAACGTAGGGTATTCAACATCAATTGTGAAGAGTGTTTAAAGAACTTCGGTGATgattttcattataatatatataacaaGCTAAAACACATGAGAGATTCAATAATTTTCAAGTGCGAAGAGTGTAAGACCTCATATAATCCGTTAGAGTATTCCATACAAAGATATAAGCTATTGAATTTAGATGCGTGTAAAAGTAAGATGATACTGAGCGAGTTATGTACAACGGAAATGAGCGATGGTGAAGCATCGTACTCTGGTTTTGGATCCCTCCATGAGCTAGTTGAGCCAGAGAGCACGACCGTAGATTTTACAATAGAATTCATCAGTGACTGTGAGGTTAAAACTGAACCGTTATCACCGTGA
- Protein Sequence
- MNLLDYVCDYCSRSFTRKYNLQMHIENCHINTSCFCDICKKKFGSPAGLQLHLTHGHNSFGQPFPECDICGRVFTRKQNIVSHMTTVHLQGVGPEIRCELCNKTFTTERNLKRHVTQLHNPDVEYPTCNDCHKVFRGKQSLIAHIQSLHNSAKGQIRCHLCDKVYTNNRNLKRHVEMFHGERGEYRCDICPKIYTSNQSLRRHLRTRHSCDDRESIQCRFCNKIIYGKDNLDCHVQLYHFKNENRSMIFSCEWCNKSFKEEVLLRTHVKNDHSFKSFYKYCKQSLLRQMTESRKKSLYSCEFCSNSFASVYELKDHMRGCHDKDYILSTCNVCFGKFYSKETMSHHKKYCLPPPNVFTCTHCDKLFTVLSSLEFHTRIFHPQSQIADSNITSTNDADIGYFKCTHCDRVYYSERSLKHHIKLKHTTDVAMECQYCGKICSNKYYLASHIKIVHSNTSWSKCDYCDKLFKSKRNIRRHIEYTHLGMQRYKCIECETLFKEKRSLRKHVRTKHPNSATFPQCHICYKRFESAKSCKIHLKLLHSFNMNTFPCDLCPISFSSKEALSIHLQTKHLAEDEIYKCEECNLVFKGQEKFEQHNDVCHVSLLPNIKQKVLPRCILCIKDFSTRKTLKRHIKKFHEGFDVDELATFGSKRRVFNINCEECLKNFGDDFHYNIYNKLKHMRDSIIFKCEECKTSYNPLEYSIQRYKLLNLDACKSKMILSELCTTEMSDGEASYSGFGSLHELVEPESTTVDFTIEFISDCEVKTEPLSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00858779;
- 90% Identity
- iTF_01010599;
- 80% Identity
- -