Cbil001369.1
Basic Information
- Insect
- Clanis bilineata
- Gene Symbol
- -
- Assembly
- GCA_036417725.1
- Location
- CM071138.1:5873358-5875670[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 1.2e-06 8.1e-05 23.4 1.8 1 23 6 29 6 29 0.95 2 21 0.0011 0.073 14.1 2.7 2 23 35 57 34 57 0.94 3 21 1.1e-05 0.00076 20.3 0.2 2 23 66 88 66 88 0.97 4 21 6.3e-06 0.00043 21.1 1.6 2 23 97 119 96 119 0.92 5 21 5.7e-06 0.00039 21.2 0.8 2 23 127 149 127 149 0.97 6 21 3.9e-06 0.00026 21.8 0.4 2 23 157 179 156 179 0.95 7 21 2.7e-07 1.9e-05 25.4 2.0 1 23 185 208 185 208 0.98 8 21 0.073 5 8.3 0.4 2 23 217 239 216 239 0.94 9 21 4e-05 0.0027 18.6 0.9 1 23 247 270 247 270 0.96 10 21 0.00015 0.0099 16.8 0.5 1 23 296 319 296 319 0.96 11 21 3.8 2.6e+02 2.9 2.5 2 20 327 345 326 347 0.84 12 21 1 70 4.7 1.8 1 23 355 378 355 378 0.94 13 21 0.00036 0.024 15.6 5.9 1 23 400 423 400 423 0.97 14 21 1.1e-05 0.00075 20.4 0.6 2 23 430 452 429 452 0.96 15 21 2.4e-05 0.0017 19.3 1.6 2 23 459 481 458 481 0.94 16 21 0.008 0.55 11.3 2.2 1 23 487 510 487 510 0.97 17 21 0.25 17 6.6 4.8 2 23 518 540 518 540 0.95 18 21 0.00014 0.0098 16.8 0.1 1 23 547 570 547 570 0.97 19 21 0.0026 0.18 12.9 1.9 1 23 577 600 577 600 0.92 20 21 0.045 3.1 9.0 2.2 6 23 618 636 614 636 0.89 21 21 1.6 1.1e+02 4.1 0.2 1 12 686 697 686 701 0.87
Sequence Information
- Coding Sequence
- ATGAatttacttgactatgtttgtgatTACTGCAGCAGGACTTTCACAAGGAAATACAATCTTCAAATGCACATAGAGAACTATCACATAAATTCTACATGTTTTTGTGACATATGTCAGAAGCAATTTTGCACCCCAGCTGGGTTACAACTGCATCTCTCCCGAGGTCACAACAGGTACGGCCAACCGCTACCGGAATGCGATATCTGTGGACGCATCTTCACAAGGAAGCAGAATATCATGTCTCACATGATCACCGCACATTTACAAGGGATCAGGCCGGATATACGATGCAAATTGTGCGACAAAACCTTTACTACCGAGAGGAATTTGAAGCGCCATGTCACTCAGTTACATAACCCCGATGTGGAGTATCCAACTTGTGACGATTGTCATAAAGTATTCAGAGTAAAGCAGTCTTTAATAGCCCATATACAAACTGCACACAACTCTTGTAGAGACCAGATAAGTTGTGGCCTATgtgataaagtatatacaaaCAATAGAAATTTAAAAAGGCATATTGAGATGTACCATGGAGAAAAAGGAGAATTTCGTTGCGATATTTGCCCTAAAACATACACATCAAATCAGAGTTTGCGTCGTCATTTACGTACGAGACACAACTCTGAAGATCAGGAATCGTTGCAGTGCAGTTTCTGTAACAAAATCATATATGGGAAGGATAATTTTGAGAGTCATGTACAGTTATATCACTGTCAAGATGATGAAATGAGTTTCACTTGTGAGCGATGTGATAAGAGTTTTAAAGAAGAAGTACTGTTAAGAAGACATGTTAAAAACGACCACTCGTTTAAAACATTCTATAAATACTGCAAAGAGTCGTTGTTAAAGCAGATGACGGAGTCTCAGAAGAAATTTTTGTACAACTGTGAGTTTTGTTCAACATCCTTTCCGAGTGTTTATGAATTAAAGGATCATATGAGAGGAAGTCATGACAAGGAGTACATACTCTCCACCTGCAATGTATGCTTTGAGAAATTTTATAGTAAGGAAATTTTCACACATCATAAGAAATTTTGTCTGCCCCCACCAAACGTTTACTCATGCATCCACTGTGACAAATTATTCACAGTTGTGTCAAGCCTTGAGTTTCATACCAGAATATTCCACCCGCAGTCACAGATAGCCGATTCTAATATAACTTCAACAAATGATGAAACTGAGATTGGATACTTTAGATGTAATCATTGTGACAGAGTATATTATAGTGAACGCTCTCTCAAACACCATATTAAGTTGAAACACACAACAGATGTCGCTATGGAGTGTGAATACTGTGGAAAGATATGCAGTAACAAATACTACCTTGCTTCACATATAAAAATAGTCCATAGTAACAATTCATGGTCGAAATGTGATTATTGTGAGAAAGTGTTTAAATCCAAAAGGAATATTCGACGTCATATAGAGTATACGCATTTGGGGATGCAACGGTACAAATGTATAGAATGCGAGACGCTTTTCAAAGAGAAAAGGAGTTTACGGAAGCATGTACGGACAAAACATCCAAATTCCGCATCGTTTCCGCAGTGTCATATATGTTACAAGAGATTTGAGTCTGCAAAGTCgtgtaaaatacatttaaagttACTGCATTCGTTCAATATGAACACATTTCCGTGTGACTTGTGTCCGGTATCATTCGGGTCTAAAGAAGCACTCACAATACATCTCCAAACCAAACATTTAGCCGAAGACGAGATTTACAAATGCGAAGAGTGCAACTTAGTTTTCAAAGGGCAAGATAAATTTGAGCAGCACAACGAAATATGCCACGTCAGCCTATTCCCTAACATAAAACAGAAAGTTCTACCACGGTGCATTCTGTGTATAAAAGATTTCAGTACGAGAAAGACTTTGAAGCGTCATATAAAAAAGTTCCACGAAGGATTTGACGTTGATGAGCTAGCCACGTTCGGTTCAAAACGAAGAAATTTCAATATAGATTGTGAGGAATGCATAAGAAACTTTAGTGACGATTCacataacaatatttataacaaattaaaacacATAAGAGATTCCGTGATTTTCAAATGCGAGGAGTGTAAAGCTTCGTACAATAGCTTGGAGTATGCGATACAGAGGTACAAGCTTCTGAATGTTGACGCCTGTAAGAGTAAAATGATTTTGAGCGAGCTGTGTACTACGGAGATGAGTGATGATGAAGCTTCGTACTCAGGTTTTGGATCTCTTCACGAGCTGGTGGAGCCTGTGAGTACCACATCTGAGATAAAAATTGAGTTGATAGACGACTGCGACATTAAGACTGAACCCTTATCGCCATAA
- Protein Sequence
- MNLLDYVCDYCSRTFTRKYNLQMHIENYHINSTCFCDICQKQFCTPAGLQLHLSRGHNRYGQPLPECDICGRIFTRKQNIMSHMITAHLQGIRPDIRCKLCDKTFTTERNLKRHVTQLHNPDVEYPTCDDCHKVFRVKQSLIAHIQTAHNSCRDQISCGLCDKVYTNNRNLKRHIEMYHGEKGEFRCDICPKTYTSNQSLRRHLRTRHNSEDQESLQCSFCNKIIYGKDNFESHVQLYHCQDDEMSFTCERCDKSFKEEVLLRRHVKNDHSFKTFYKYCKESLLKQMTESQKKFLYNCEFCSTSFPSVYELKDHMRGSHDKEYILSTCNVCFEKFYSKEIFTHHKKFCLPPPNVYSCIHCDKLFTVVSSLEFHTRIFHPQSQIADSNITSTNDETEIGYFRCNHCDRVYYSERSLKHHIKLKHTTDVAMECEYCGKICSNKYYLASHIKIVHSNNSWSKCDYCEKVFKSKRNIRRHIEYTHLGMQRYKCIECETLFKEKRSLRKHVRTKHPNSASFPQCHICYKRFESAKSCKIHLKLLHSFNMNTFPCDLCPVSFGSKEALTIHLQTKHLAEDEIYKCEECNLVFKGQDKFEQHNEICHVSLFPNIKQKVLPRCILCIKDFSTRKTLKRHIKKFHEGFDVDELATFGSKRRNFNIDCEECIRNFSDDSHNNIYNKLKHIRDSVIFKCEECKASYNSLEYAIQRYKLLNVDACKSKMILSELCTTEMSDDEASYSGFGSLHELVEPVSTTSEIKIELIDDCDIKTEPLSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00858779;
- 90% Identity
- -
- 80% Identity
- -