Spin004099.1
Basic Information
- Insect
- Sphinx pinastri
- Gene Symbol
- -
- Assembly
- GCA_947568825.1
- Location
- OX387641.1:2587756-2590074[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 6.1e-06 0.0005 21.0 3.8 1 23 7 30 7 30 0.95 2 22 0.00025 0.021 15.9 0.1 3 23 37 58 36 58 0.96 3 22 7.2e-05 0.0059 17.6 0.3 2 23 67 89 67 89 0.96 4 22 4.3e-06 0.00036 21.4 2.3 2 23 98 120 97 120 0.95 5 22 3.5e-05 0.0029 18.6 0.5 2 23 128 150 128 150 0.95 6 22 1.3e-05 0.001 20.0 2.4 2 23 158 180 157 180 0.95 7 22 4.2e-07 3.5e-05 24.6 1.3 1 23 186 209 186 209 0.98 8 22 0.18 15 6.9 0.1 2 23 218 240 217 240 0.94 9 22 0.00027 0.022 15.8 0.5 1 23 249 272 249 272 0.97 10 22 0.00057 0.047 14.8 0.5 1 23 298 321 298 321 0.96 11 22 0.073 6 8.1 0.7 2 21 329 348 328 349 0.93 12 22 0.017 1.4 10.1 2.2 2 23 358 380 358 380 0.95 13 22 0.0014 0.12 13.5 5.8 1 23 402 425 402 425 0.96 14 22 3.8e-05 0.0031 18.5 0.6 2 23 432 454 431 454 0.96 15 22 0.0004 0.033 15.3 1.9 2 23 461 483 460 483 0.94 16 22 0.0071 0.58 11.3 2.2 1 23 489 512 489 512 0.97 17 22 0.18 15 6.9 7.1 2 23 520 542 520 542 0.95 18 22 0.00011 0.0094 17.0 0.1 1 23 549 572 549 572 0.97 19 22 0.032 2.6 9.3 3.5 1 23 579 602 579 602 0.92 20 22 0.017 1.4 10.2 2.7 3 23 617 638 616 638 0.91 21 22 0.69 57 5.1 0.1 3 17 660 674 658 675 0.92 22 22 1.6 1.3e+02 3.9 0.4 1 12 688 699 688 702 0.87
Sequence Information
- Coding Sequence
- ATGACCTACCCACAAGACTTTGTCTGCGATTACTGCAGCAGGACTTTTACTCGGAAGTACAACCTTCAAATGCATATAGAGAACTGCCATGTCAACTCTTCAAGCTTCTGTGACATTTGTGATAAAAGATTCGGTAGCCCAGCCGGCCTGCAACTCCACCTGTCCCGAGGACATAATAGGTTTGGTCAGCCGTTCCCAGAATGCGATCTCTGTGGACGCATATTTACAAGAAAGCAGAATATCATGTCACACATGGTAACAGTGCATTTACAAGGTGTCGGACCAGAAATTCGGTGTAATTTGTGTAAGAAAACCTTTACAACGGAACGGAATTTGAAGAGACATTTGAATCAATTGCATAACCCTGATGTGCAGTATCCAACTTGCGATGACTGTCATAAAGTTTTCAGAGGGAAGCAGTCTCTCATAGCTCATATACAAGCTCTGCATAACTCTGGAAGAGGTCAAATAAGCTGCCATTTATGTAATAAGGTTTACACTAATAATAGAAATCTTAAAAGACACGTAGAGATGTTTCATGGTGAAAAGGGAGAGTATAGATGTGATATATGCCCCAAAATATACACATCTAATCAGAGTTTGAGAAGGCATTTACGTACAAGACATAATTCTGATGATCAAGAGTCTGTTAGGTGCGGTTATTGTAGTAAAATTATTTACGGGAAGGATAATTTGGACAGTCATGTACAATTATATCACTCTCAAGATGACGAGAAAATTAACTACTCTTGTGAAAGGTGTAACAAAATGTTTGATGAAGAAGTGATGTTACGAAGGCATGTGAAAAGTGATCATTCGTTTAAGTCCTTCTATAGATATTGCAAGCAATCTTTGATACGACAAATGTCCGAATCTCGGAAGAAGTCTTTGTACAATTGTGAATTTTGCTCAAATTCTTTCGCAAGTGTGTATGAGTTGAAAGATCACATGAGAGGAAGTCATGACAAAGAGTACATTTTATCTACATGCAATGTCTGTTTTGAAAAATTTTACAGCAAAGAAACTATGACGCTCCATAAGAAAGTCTGCCTACCACCTCCCAATGTGAACAGCTGTAGTCATTGCGATAAATTGTTTACTGACATCTCCAGTTTGGAATTTCATACTCGTATCTTCCATCCACAATCTCAGATAGCTGACTCGAACATAACATCAACAGCAGACGACACAGATGTCGGGTATTTCAGATGTAGTCATTGTGACAGGGTTTACTACAGTGAAAGGTCATTAAAACATCATGTAAAGCTGAAACATACAACAGATGTTGCTGTAGAGTGTCAGTATTGTGGAAAAATTTGCAGTAATAAATATTATCTAGCTTCTCATGTGAAAATTGTTCACAGTAATGATTCCTGGTCTAAATGCGATTATTGTGAGAAATTATTTAAATCTAAAAGGAATATACGCAGGCATATCGAGTATACACATTTGGGAATGCAAAGATATAAATGCATTGAATGTGAAACATTGTTTAAAGAAAAGAGGAGTTTGAGAAAGCATGTAAGGACAAAGCATCCAAATTCTGCATCGTTTCCACAATGCCATATATGCCACAAAAGATTTGAATCGGCAAAATCTTGTAAGATACATTTGAAGTTACTCCATTCGTTCAATATGAATACTTTTCCATGTGACTTGTGTCCTGTATCATTCAGTTCTAAGGAGGCTTTGGATATACATTTACAAACTAAACACTTAGCTGAAGATGAGATTTATAAATGTGAAGAATGTAATTTAGTTTTCAAGGGACATGAGAAATTTGAACAGCATAATGAAGTTTGTCACGTGAGCCTCTTTCCTAATATAAAGCAGAAGGTGCTTCCCCGCTGCATTATTTGCATGAAAGATTTTAGTACCAGAAAAACTTTGAAGAGACATATCAAGAAGTTCCACGACGGTTTTGACGTCGACGAATTAGCAACATTCGGTTCCAAACGTCGAGTATTTACAATAGATTGTGAGGAGTGCGTTAGAAACTTCAGCGATGAGTTTCATTTAACTGTATACAATAAGTTAAAACATTTAAGAGATTCTATAATATTTAAATGTGAGGAATGTAAAGTGTCGTATAATTCGCTAGAATATTCTATCCAGAGATATAAGCTTTTTAATATGGATGCATGTAAAAGTAAGATGGTATTGAGTGAGTTATGTACGACGGAAATGAGTGATGATGAAGCTGCGTATTCTGGTTTTGGGTCTCTGCATGAGTTGGTGGAACCAGAGAGCACTACAGTGGATATTAAATGCGAATTAATAGAGGAATGTGATATCAAGACTGAACCTATGTCGCCTTGA
- Protein Sequence
- MTYPQDFVCDYCSRTFTRKYNLQMHIENCHVNSSSFCDICDKRFGSPAGLQLHLSRGHNRFGQPFPECDLCGRIFTRKQNIMSHMVTVHLQGVGPEIRCNLCKKTFTTERNLKRHLNQLHNPDVQYPTCDDCHKVFRGKQSLIAHIQALHNSGRGQISCHLCNKVYTNNRNLKRHVEMFHGEKGEYRCDICPKIYTSNQSLRRHLRTRHNSDDQESVRCGYCSKIIYGKDNLDSHVQLYHSQDDEKINYSCERCNKMFDEEVMLRRHVKSDHSFKSFYRYCKQSLIRQMSESRKKSLYNCEFCSNSFASVYELKDHMRGSHDKEYILSTCNVCFEKFYSKETMTLHKKVCLPPPNVNSCSHCDKLFTDISSLEFHTRIFHPQSQIADSNITSTADDTDVGYFRCSHCDRVYYSERSLKHHVKLKHTTDVAVECQYCGKICSNKYYLASHVKIVHSNDSWSKCDYCEKLFKSKRNIRRHIEYTHLGMQRYKCIECETLFKEKRSLRKHVRTKHPNSASFPQCHICHKRFESAKSCKIHLKLLHSFNMNTFPCDLCPVSFSSKEALDIHLQTKHLAEDEIYKCEECNLVFKGHEKFEQHNEVCHVSLFPNIKQKVLPRCIICMKDFSTRKTLKRHIKKFHDGFDVDELATFGSKRRVFTIDCEECVRNFSDEFHLTVYNKLKHLRDSIIFKCEECKVSYNSLEYSIQRYKLFNMDACKSKMVLSELCTTEMSDDEAAYSGFGSLHELVEPESTTVDIKCELIEECDIKTEPMSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00858779;
- 90% Identity
- iTF_00859694; iTF_01359057;
- 80% Identity
- iTF_01359057;