Dpor016785.1
Basic Information
- Insect
- Deilephila porcellus
- Gene Symbol
- -
- Assembly
- GCA_905220455.1
- Location
- LR999998.1:4212238-4214583[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 5.8e-06 0.00043 21.0 3.8 1 23 8 31 8 31 0.95 2 21 0.00012 0.0086 16.9 0.4 2 23 37 59 36 59 0.94 3 21 1.8e-05 0.0013 19.4 0.3 2 23 68 90 68 90 0.97 4 21 2.3e-06 0.00017 22.2 1.6 2 23 99 121 98 121 0.95 5 21 3.3e-05 0.0024 18.6 0.6 2 23 129 151 129 151 0.95 6 21 9.3e-06 0.00069 20.3 2.5 2 23 159 181 158 181 0.95 7 21 1.6e-07 1.2e-05 25.9 1.9 1 23 187 210 187 210 0.98 8 21 0.0063 0.47 11.4 0.6 2 23 219 241 218 241 0.96 9 21 0.00017 0.013 16.3 0.2 2 23 256 278 255 278 0.95 10 21 0.00028 0.021 15.6 2.2 1 23 304 327 304 327 0.97 11 21 0.38 28 5.8 0.6 2 21 335 354 334 355 0.93 12 21 0.046 3.4 8.7 1.0 3 23 365 386 364 386 0.95 13 21 0.00021 0.016 16.0 6.4 1 23 409 432 409 432 0.97 14 21 3e-05 0.0022 18.7 0.6 2 23 439 461 438 461 0.96 15 21 0.00011 0.0082 16.9 1.9 2 23 468 490 467 490 0.94 16 21 0.0068 0.5 11.3 2.2 1 23 496 519 496 519 0.97 17 21 0.17 13 6.9 7.1 2 23 527 549 527 549 0.95 18 21 9e-06 0.00067 20.4 0.1 1 23 556 579 556 579 0.97 19 21 0.041 3 8.8 3.6 1 23 586 609 586 609 0.91 20 21 0.43 32 5.6 2.1 5 23 626 645 623 645 0.89 21 21 5.9 4.4e+02 2.1 0.3 1 11 695 705 695 708 0.90
Sequence Information
- Coding Sequence
- ATGAATCACACTCAGGGTGACTTTGTTTGTGACTATTGCAGTAGAACTTTCACTAGAAAATATAATCTGCAAATGCATATAGAGAACTGTCATGTCAACTCTTCATGCTTCTGTGATATATGTGACAAGACATTTGGCAGTCCTGCAGGCTTACAGCTTCATTTATCCCGAGGGCACAACCGCTTCGGTCAACCCTTCCCAGAATGTGACTTATGTGGAAGAATATTTACGAGAAAACAGAATGTTATGTCTCACATGATAACGGTACATTTACAAGGAGTAGGTCCCGAGATAAGGTGTGAATTATGCAATAAGACTTTTACAACTGAAAGAAATTTGAAGAGGCATTTGAACCAGCTTCATAATCCAGATGCTCAATACCCGACTTGTGATGATTGCCACAAGGTTTTTAAAGGAAAACAGTCCCTCATCGCTCATATACAAGCTTTACATAACGTTGGCAAGGGAGTCATAACATGTCATTTATGCAATAAAGTGTATACAAACAACAGAAACTTAAAGAGACATGTCGAAATGTTTCATGGAGAGAAAGGAGAATATCGGTGTGATATTTGCCCTAAAACCTACACGTCAAATCAAAGTTTGAGACGCCATTTACGGACGAGGCACAGTTCTGACGATCAAGAGTCTATTGAGTGCAATAATTGCCATAAAATAATATACGGGAAAGATAACTTGGACAGACATTTGCAAGTGTACCATGCTCAAAAGATTGATGATATTGGAGAAACGAAAATGGGTATCTCATGTGAAAGATGTGGCAAGAGTTTTGACGAAGAAGTGATGTTGCGAAGACATGTAAAGAGCGATCACTCGTTCAAATCATTTTATAAGTACTGTAAGCAATCTTTAATAAAACAGATGTCGGAAACTCAAAAGAAATCCTTATACAAATGCGAATTTTGTTTTCACTCATTTCCTTCTGTTTACGAGTTGAAAGACCATATGAGAGGAAGCCATGATAAGGAGTATATTTTATCTACATGTAATGTGTGTTTCAATAAATTTTATAGCAAGGAAATGATGACGGTACACAAAAAAGCTTGTCTACCCCCAGCTAACGTAAACAGCTGTAGTCGTTGCGATAAATTGTTCACTGATATAAGCAGTTTGGAGTTCCATACAAGAATATTTCACCCCCAAGCGCAAATTGCAGATTCTAATATCACATCAACTAATATTGAGGATATTGATGTGGGTTTTTACAAGTGCAAGCATTGTGATCGAGTATATTACAGTGAGAGGTCTCTTAAACATCACATCAAGTTGAAACATACCACAGATGTCGCGATGGAGTGCGAGTATTGTGGTAAAATTTGCAGTAACAAGTATTACCTTGCCTCTCACGTTAAAATAGTTCATAGCAACGACTCCTGGTCAAAATGTGATTATTGCGATAAACTATTCAAATCTAAAAGGAATATTCGAAGACACATTGAGTATACACATTTGGGTATACAAAGATATAAATGCATAGAATGTGAAACGCTATTTAAAGAGAAAAGGAGTTTGAGAAAGCACGTGAGGACAAAGCACCCAAATTCAGCCTCTTTCCCTCAGTGCCATATATGCCATAAGAGGTTTGAGTCGGCCAAATCTTGTAAGATTCACTTAAAGTTACTACATTCTTTTAATATGAATACGTTTCCATGCGACTTGTGCCCAATATCTTTTAGTTCTAAAGAGGCGTTGAACATACATTTGCAAACGAAACATTTAGCCGAAGACGAAATTTATAAGTGTGAGGAGTGTAATTTGGTTTTCAAAGGGCATGAAAAGTTTGAGCAGCATAATGATGTGTGTCATGTTAGCCTTCTACCCAATATTAAGCAGAAGGTCTTACCCCGTTGCATATTATGTATGAAGGATTTCAGTGCTAGGAAAACTTTAAAACGGCATATAAAGAAATTCCACGATTGCTTTGACGTCGACGAACTTGCTACATTTGGCTCGAAGCATAGAGTTTTCAACGTTGATTGTGAAGAATGCATAAGGAATTTCAGTGATGATTTTCACTTCAATATTTATAATAGACTGAAGCACTTGAGAGATTCAGTTATTTTCAAGTGCGAGACTTGTAAATCGTCTTTTAACGCATTAGAATATGCTATACAAAGGTATAAATTACTAAACGTAGATGCTTGTAAGAGTAAAATGATATTAAGCGAGCTATGCACAACGGAGATGAGTGATGGGGAAGCATCTTACTCTGGGTTTGGGTCCTTGCATGAGTTGGTTGAGCCAGAAAGCACCACCTGCGAATTAAAGTTGGAACCGGAAGATTATATTGATTGTGTAATAAAGACTGAACCTATGTCTCCATAA
- Protein Sequence
- MNHTQGDFVCDYCSRTFTRKYNLQMHIENCHVNSSCFCDICDKTFGSPAGLQLHLSRGHNRFGQPFPECDLCGRIFTRKQNVMSHMITVHLQGVGPEIRCELCNKTFTTERNLKRHLNQLHNPDAQYPTCDDCHKVFKGKQSLIAHIQALHNVGKGVITCHLCNKVYTNNRNLKRHVEMFHGEKGEYRCDICPKTYTSNQSLRRHLRTRHSSDDQESIECNNCHKIIYGKDNLDRHLQVYHAQKIDDIGETKMGISCERCGKSFDEEVMLRRHVKSDHSFKSFYKYCKQSLIKQMSETQKKSLYKCEFCFHSFPSVYELKDHMRGSHDKEYILSTCNVCFNKFYSKEMMTVHKKACLPPANVNSCSRCDKLFTDISSLEFHTRIFHPQAQIADSNITSTNIEDIDVGFYKCKHCDRVYYSERSLKHHIKLKHTTDVAMECEYCGKICSNKYYLASHVKIVHSNDSWSKCDYCDKLFKSKRNIRRHIEYTHLGIQRYKCIECETLFKEKRSLRKHVRTKHPNSASFPQCHICHKRFESAKSCKIHLKLLHSFNMNTFPCDLCPISFSSKEALNIHLQTKHLAEDEIYKCEECNLVFKGHEKFEQHNDVCHVSLLPNIKQKVLPRCILCMKDFSARKTLKRHIKKFHDCFDVDELATFGSKHRVFNVDCEECIRNFSDDFHFNIYNRLKHLRDSVIFKCETCKSSFNALEYAIQRYKLLNVDACKSKMILSELCTTEMSDGEASYSGFGSLHELVEPESTTCELKLEPEDYIDCVIKTEPMSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00858779;
- 90% Identity
- iTF_00429218;
- 80% Identity
- iTF_00429218;