Basic Information

Insect: Halictus rubicundus
Gene Symbol: -
Assembly: GCA_028454235.1
Location: CM052183.1:4589303-4593593[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 21 7.8 6.4e+02 1.1 0.1 3 17 60 74 59 75 0.91

2 21 0.74 60 4.3 5.8 2 23 243 265 242 265 0.96

3 21 0.075 6.1 7.5 1.8 1 23 313 335 313 335 0.97

4 21 0.17 14 6.3 1.6 1 23 384 406 384 406 0.98

5 21 0.088 7.2 7.3 0.2 1 19 460 478 460 480 0.93

6 21 0.00094 0.077 13.4 2.4 1 23 521 543 521 544 0.94

7 21 0.00026 0.021 15.2 0.3 1 23 592 614 592 614 0.97

8 21 0.00065 0.053 13.9 0.1 1 23 620 642 620 642 0.97

9 21 2.6e-06 0.00021 21.5 0.3 2 23 686 708 686 708 0.96

10 21 0.00038 0.031 14.7 0.5 2 23 716 738 715 738 0.95

11 21 1.9e-05 0.0015 18.8 0.3 2 23 746 768 746 768 0.97

12 21 0.00029 0.023 15.1 0.0 1 23 776 798 776 798 0.94

13 21 0.03 2.5 8.7 0.4 1 20 858 877 858 877 0.97

14 21 0.0096 0.79 10.3 0.1 1 23 895 917 895 917 0.97

15 21 3.7e-05 0.003 17.9 0.9 1 23 935 957 935 957 0.97

16 21 0.00027 0.022 15.1 7.0 1 23 979 1002 979 1002 0.96

17 21 0.02 1.7 9.2 1.8 2 23 1066 1088 1065 1088 0.93

18 21 0.006 0.49 10.9 2.2 3 23 1130 1151 1128 1151 0.91

19 21 0.0078 0.64 10.6 0.0 1 23 1158 1182 1158 1182 0.95

20 21 0.0052 0.42 11.1 1.1 1 23 1187 1210 1187 1210 0.97

21 21 0.037 3 8.4 2.4 2 23 1240 1262 1240 1262 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	21	7.8	6.4e+02	1.1	0.1	3	17	60	74	59	75	0.91
2	21	0.74	60	4.3	5.8	2	23	243	265	242	265	0.96
3	21	0.075	6.1	7.5	1.8	1	23	313	335	313	335	0.97
4	21	0.17	14	6.3	1.6	1	23	384	406	384	406	0.98
5	21	0.088	7.2	7.3	0.2	1	19	460	478	460	480	0.93
6	21	0.00094	0.077	13.4	2.4	1	23	521	543	521	544	0.94
7	21	0.00026	0.021	15.2	0.3	1	23	592	614	592	614	0.97
8	21	0.00065	0.053	13.9	0.1	1	23	620	642	620	642	0.97
9	21	2.6e-06	0.00021	21.5	0.3	2	23	686	708	686	708	0.96
10	21	0.00038	0.031	14.7	0.5	2	23	716	738	715	738	0.95
11	21	1.9e-05	0.0015	18.8	0.3	2	23	746	768	746	768	0.97
12	21	0.00029	0.023	15.1	0.0	1	23	776	798	776	798	0.94
13	21	0.03	2.5	8.7	0.4	1	20	858	877	858	877	0.97
14	21	0.0096	0.79	10.3	0.1	1	23	895	917	895	917	0.97
15	21	3.7e-05	0.003	17.9	0.9	1	23	935	957	935	957	0.97
16	21	0.00027	0.022	15.1	7.0	1	23	979	1002	979	1002	0.96
17	21	0.02	1.7	9.2	1.8	2	23	1066	1088	1065	1088	0.93
18	21	0.006	0.49	10.9	2.2	3	23	1130	1151	1128	1151	0.91
19	21	0.0078	0.64	10.6	0.0	1	23	1158	1182	1158	1182	0.95
20	21	0.0052	0.42	11.1	1.1	1	23	1187	1210	1187	1210	0.97
21	21	0.037	3	8.4	2.4	2	23	1240	1262	1240	1262	0.94

Sequence Information

Coding Sequence: ATGGACGAGGTGGTGGTGTTGCAGAACATGGAAAATGTGTGCAGGCTCTGCCTCTCGGACGACGAGCCGAAATTGTCGGTGTTCGGGGCGCAAGAAACTCCGGTATCACTGGCCACTAAGATACAAGCCTGCCTATCGATTCAGATTTTAACCACGGACAGGTTGTCAACGCAGATATGTACACAGTGTGTTAAAAATGTGAATCAGTGGCATAATTATAAGGAAGCTTGCTTTCGATCGCAAGATAAATTACACCAATGGCTGGAAAGACATCTACGAAGCAGTCCAATGGTTGTGACTATCAAAGATGAACCCGTCGATCTGGACTTCTGCGAAGACAATATTGAGGTCATTTCTGAATCTATCGTTGATTCAGATATAGAGACTACTAATATCGAAGAAAGTCTTGACGACTCCATAAACACACTTCACATCCAAGAGATAACCGATGACGAAGCAGATGATGCAAGAGTTCCACCAACATTAGCAAAAGATTTAGATATCTGTATAAAGCCAGAGCCGGCAGAGGACTGTGACACAGACTGTACTATAGAAATAGAATCCGTTACTGGCAGCGAACTGGTGTTGAACCCCCTTTCGAACAAGGAGGATAGAGTAATGGAGGCCGATTCTACGCAGAAGTCCAGAGCATCAACATCAGCAAGTAAAAAGAAAATGAGAAGAGGTCCTCATACCCATTACAGAGGAATACGTGCATTCAAGCAAAAATGCGTGCACTGTCAAATCTTTTTACATTCTAAATATTCATATACTAAGCACATGGAAAGATTCCATACAGAGAAACAGAATGGTGATGCCGACGAACAGTTGAAAGATGAGGAAGAGGTTGAAGATCTGGAAGATGAGCTGATGAGTATGGAGAAAGACGCTCCGCTGACTCAAGTGCAGCAGAACATAATCAGTCAATTGAAAACGTTCTCGTGTTACTCCTGTCAGCAATCATTTGGCGATCGTAGAAGTACGCTTTCTCATATTCGTCAGCATATGCCGGATCTGAGACCGTACACGTGTATCGCATGTTTAACAGAGTTCCCTGATCGCTCGATGTACAAGCTGCATTGCGGCGCGTCGTTCGAGTGTGCAATGAAAATTGCTCTGGTGATACCGAGCGAGGGCGAAGAGAAATATTTCACATGTAACATGTGTCTGCGTTCGATGCAAAATAGAAAAGAGTTGCTCAGCCATCTTTCCAAACACTCTGACAAACAGTATCAACAACTAGTTTCACCATCGCGATCACCTCCTAAACTCAAACCAATTTCACCTCTGCCGGCGACTAAACAAGAAGCAAAGAAATCGATCGGAGGCGGTGTGGAAGTTCCCTTGCCTTACAAAAATGGCGATCCAGTACATAATCACATTTGCGATTTGTGCGGTATGATCTACAGATACAGGCCCAACATGCTGAAGCATAAAGATCTGTGTCAACGTTTGCAGCCGGAGATTCGAACCTCCTACAAATGCATCCACTGTGGAATGACCTATCTCGTGTTCAAAAAGTTCCACAACCACATCACTATAGACCATAAAAAGAAAGACTTCTTCTGTGCCGAGTGTGGTGCTAAATTTAGATCTCCTAGCGAGTATTTGACGCATCACGAGATGCATCATGGCAAACCGAAGAAGAAGCCAGTGCTGGAAAGGAACGAACCATCTTCTAAAACTAATGCGCAAAACTTTTCGACGCCCATCAAAGATTGGGATACGTTCGAGGCTGAAATGAACGCTGGTAGAATATCTGACAGCAACCGGTATAGTTGTGCTTTGTGCAACTTAGAGTTTTCCACCAGAGCTGAATTAACAGAGCACAGGAACCTTCATCTGAAGGTTAAGATCTATTCCTGCGTGATCTGCCGCAGTATGTTCAGCAGTGCGGGCGCTTTGGAGATCCACATGAAGGACCATGGAATAGAGGACCCCAACGAGAGAAACGCGAACAGCTCCTGCGTAGAGTATGGAACTATGGACAATACTTCAGAGGATTGTAAACCGGTGAACGTGAGCGCCACCTCAGACCCGGGTACCAAAAAGAACGAGTGTCGCGAATGCGGCAAGGTATTCTCGAACTATGCGAATGTCAGACGACACATACGTAACATTCATAAGACTATCAAGTATCGCGTCAGTTGCACTCAATGTTCCCGGAAGTTCAAGACTAAGGAAGTCTTGGCCAGGCACATTGCGAGCGAGCACAAGGCCACCAAGGCTGTTCGCCAGTGTCCTCAGTGTCCGAAGACCTTCGTCTTCCAAGCGAACTTGAACCTTCACTTCCAGACCGCTCACAAAAACAAGAAGAGTGGCGGTTACGAATGCGATATTTGCGGCAAGGCGTTCATGGAGGAAGCATCCCTCAAAATACACCGAGGATGGCATAACAGAACGAACTCTCGGCTGAGCTTGCGAACAGCGCCGAAAACGCCAGAAGATCGGAAACCGGCCAAGAATGCTCTCACCCCTAAACAGGAGAAGGAGTTCAATACCACTCCTGATAAGCCCGCCAGAGCCAGAAAATCATTTCCCAATTCGCCACCCGTGAAACCCGAGGGTAAATTTCAGTGTCAGGTATGCAACGACAAGTTCAACGATGTCACCGAGTTGAGGAAACACTTGTGGGACGTCCACTGCTCCCACAAGACCGAGAAAACTTTCGCGGGCGAAGAATTCACGTGCGAGATCTGCAGCAATATCTATCCTGACAAAGAGACGCTGGACATGCACATGGAGTGGCACAAGTCGTATCCGAATTTGAGTCGCATCAGAAAAGTTAGGAGCCAGGGTAACTTCCCGTGCGACATTTGCGGGAAATTCTACAGCTCGAAGAAAGTGTTATGGAGACACAAGAAGCTTCATAAAGTGACCAACATCGGCGCCGCTAAGTTGCAATCGGTGCTCAAGAAGCCGATGCTGGATCAGCACATATGCAACATTTGCCACAAGATCTTCTGCAGCAACCAGACCCTGCAACGTCACAGGTTGACCCTGCACAGTGATTTATCCAACCAGCGGCCGCAGACGATGTTCTCTGGCACGAGGAGGATGCCCCAGGAGGGGCCTAACCCGAAGAAGATGAAACTAGATGGTAACAGAGATGAGGAGGAGGAGGAAGAGGAGGAGGAGGTTCTGCGGAAACCCGCGGTACTAGCAAATTCAATGAACGTCAGTAGGAAGCCGGTCATGTGTCACGTCTGCAGAAAGTTCTTCGCGAACATGAGCGTGCTGTACAAACACAAACAATTAATGCACAGCAAGTCTCGGCCGACGAAGACCGCCGGGAAGGCGACCGCGACCGCGACCGCGACCGCGACCGCGACCACGTCCTCGTCCTCGCAATGTATACCGCTGGCCGGAGAAGATGGCAAAGTTTGCTGCAACGTCTGCTACAAGTCGTTCTCCGCCGTATCGAACCTGCGCCAGCACTTCACCATTAAGCACAAGAACAGCCCACCCAAGTTCGCATGTCCCATCGACGGCTGCAAGCTAATGTTCCCGTCTCCGATGGCTCTGAAGGCCCACGAGCTGTCCCACACCAGCATGATCTTCAACTGCAACCTGTGCGGTCGCCATGTGTTCAACAGGCAGGCGATGACCGACCACATGCTGACCGCTCACAACACCGTTTACGACGCTGGAAAGAGCAAGAACTTCCACAAAGAGACGGACCTGAGTCTCTACGTGGTGCAGAACGCGGTCGACGCAACTTGTCCTCACTGCAAGATCAAGTATCCCAACAACAAAGCCATGAAGATCCATTACTTCAAGTTCCACGACTACTTAGTATAA
Protein Sequence: MDEVVVLQNMENVCRLCLSDDEPKLSVFGAQETPVSLATKIQACLSIQILTTDRLSTQICTQCVKNVNQWHNYKEACFRSQDKLHQWLERHLRSSPMVVTIKDEPVDLDFCEDNIEVISESIVDSDIETTNIEESLDDSINTLHIQEITDDEADDARVPPTLAKDLDICIKPEPAEDCDTDCTIEIESVTGSELVLNPLSNKEDRVMEADSTQKSRASTSASKKKMRRGPHTHYRGIRAFKQKCVHCQIFLHSKYSYTKHMERFHTEKQNGDADEQLKDEEEVEDLEDELMSMEKDAPLTQVQQNIISQLKTFSCYSCQQSFGDRRSTLSHIRQHMPDLRPYTCIACLTEFPDRSMYKLHCGASFECAMKIALVIPSEGEEKYFTCNMCLRSMQNRKELLSHLSKHSDKQYQQLVSPSRSPPKLKPISPLPATKQEAKKSIGGGVEVPLPYKNGDPVHNHICDLCGMIYRYRPNMLKHKDLCQRLQPEIRTSYKCIHCGMTYLVFKKFHNHITIDHKKKDFFCAECGAKFRSPSEYLTHHEMHHGKPKKKPVLERNEPSSKTNAQNFSTPIKDWDTFEAEMNAGRISDSNRYSCALCNLEFSTRAELTEHRNLHLKVKIYSCVICRSMFSSAGALEIHMKDHGIEDPNERNANSSCVEYGTMDNTSEDCKPVNVSATSDPGTKKNECRECGKVFSNYANVRRHIRNIHKTIKYRVSCTQCSRKFKTKEVLARHIASEHKATKAVRQCPQCPKTFVFQANLNLHFQTAHKNKKSGGYECDICGKAFMEEASLKIHRGWHNRTNSRLSLRTAPKTPEDRKPAKNALTPKQEKEFNTTPDKPARARKSFPNSPPVKPEGKFQCQVCNDKFNDVTELRKHLWDVHCSHKTEKTFAGEEFTCEICSNIYPDKETLDMHMEWHKSYPNLSRIRKVRSQGNFPCDICGKFYSSKKVLWRHKKLHKVTNIGAAKLQSVLKKPMLDQHICNICHKIFCSNQTLQRHRLTLHSDLSNQRPQTMFSGTRRMPQEGPNPKKMKLDGNRDEEEEEEEEEVLRKPAVLANSMNVSRKPVMCHVCRKFFANMSVLYKHKQLMHSKSRPTKTAGKATATATATATATTSSSSQCIPLAGEDGKVCCNVCYKSFSAVSNLRQHFTIKHKNSPPKFACPIDGCKLMFPSPMALKAHELSHTSMIFNCNLCGRHVFNRQAMTDHMLTAHNTVYDAGKSKNFHKETDLSLYVVQNAVDATCPHCKIKYPNNKAMKIHYFKFHDYLV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00762706; iTF_00862731; iTF_00024757; iTF_01071144; iTF_00864788; iTF_00864125; iTF_00866851; iTF_00861346; iTF_00865479; iTF_00866165; iTF_00863417; iTF_00860572; iTF_00862048;
90% Identity: iTF_00762706;
80% Identity: -