Basic Information

Insect: Lasioglossum marginatum
Gene Symbol: -
Assembly: GCA_028455795.1
Location: CM052264.1:3308654-3312930[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 21 8 7.6e+02 1.1 0.1 3 17 60 74 59 75 0.91

2 21 1.9 1.8e+02 3.1 5.7 2 23 243 265 242 265 0.96

3 21 0.014 1.3 9.8 2.5 1 23 313 335 313 335 0.97

4 21 0.026 2.5 8.9 1.9 1 23 384 406 384 406 0.98

5 21 0.056 5.3 7.9 0.2 1 19 463 481 463 483 0.93

6 21 0.00036 0.034 14.8 1.5 1 23 524 546 524 546 0.96

7 21 0.00026 0.025 15.2 0.3 1 23 595 617 595 617 0.97

8 21 0.00067 0.064 14.0 0.1 1 23 623 645 623 645 0.97

9 21 2.6e-06 0.00025 21.5 0.3 2 23 689 711 689 711 0.96

10 21 0.00026 0.025 15.3 0.4 2 23 719 741 718 741 0.95

11 21 0.00018 0.017 15.8 0.8 2 23 749 771 749 772 0.96

12 21 0.0029 0.27 12.0 0.1 1 23 779 801 779 801 0.92

13 21 0.031 3 8.7 0.4 1 20 861 880 861 880 0.97

14 21 0.0001 0.0096 16.5 0.2 1 23 898 920 898 920 0.97

15 21 6.8e-05 0.0064 17.1 0.9 1 23 938 960 938 960 0.97

16 21 0.00099 0.094 13.4 6.3 1 23 982 1005 982 1005 0.94

17 21 0.013 1.3 9.9 1.6 2 23 1063 1085 1062 1085 0.93

18 21 0.0045 0.43 11.4 1.7 2 23 1120 1142 1119 1142 0.92

19 21 0.019 1.8 9.4 0.0 1 23 1149 1173 1149 1173 0.93

20 21 1.1 1.1e+02 3.8 2.3 1 23 1178 1201 1178 1201 0.96

21 21 0.046 4.3 8.2 2.3 2 23 1231 1253 1231 1253 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	21	8	7.6e+02	1.1	0.1	3	17	60	74	59	75	0.91
2	21	1.9	1.8e+02	3.1	5.7	2	23	243	265	242	265	0.96
3	21	0.014	1.3	9.8	2.5	1	23	313	335	313	335	0.97
4	21	0.026	2.5	8.9	1.9	1	23	384	406	384	406	0.98
5	21	0.056	5.3	7.9	0.2	1	19	463	481	463	483	0.93
6	21	0.00036	0.034	14.8	1.5	1	23	524	546	524	546	0.96
7	21	0.00026	0.025	15.2	0.3	1	23	595	617	595	617	0.97
8	21	0.00067	0.064	14.0	0.1	1	23	623	645	623	645	0.97
9	21	2.6e-06	0.00025	21.5	0.3	2	23	689	711	689	711	0.96
10	21	0.00026	0.025	15.3	0.4	2	23	719	741	718	741	0.95
11	21	0.00018	0.017	15.8	0.8	2	23	749	771	749	772	0.96
12	21	0.0029	0.27	12.0	0.1	1	23	779	801	779	801	0.92
13	21	0.031	3	8.7	0.4	1	20	861	880	861	880	0.97
14	21	0.0001	0.0096	16.5	0.2	1	23	898	920	898	920	0.97
15	21	6.8e-05	0.0064	17.1	0.9	1	23	938	960	938	960	0.97
16	21	0.00099	0.094	13.4	6.3	1	23	982	1005	982	1005	0.94
17	21	0.013	1.3	9.9	1.6	2	23	1063	1085	1062	1085	0.93
18	21	0.0045	0.43	11.4	1.7	2	23	1120	1142	1119	1142	0.92
19	21	0.019	1.8	9.4	0.0	1	23	1149	1173	1149	1173	0.93
20	21	1.1	1.1e+02	3.8	2.3	1	23	1178	1201	1178	1201	0.96
21	21	0.046	4.3	8.2	2.3	2	23	1231	1253	1231	1253	0.94

Sequence Information

Coding Sequence: ATGGATGAGGTGGTAGTGTTGCAGAACATGGAAAATGTGTGCAGGCTCTGCCTCTCCGGCGACGAGCCGAAATTGTCGGTGTTCGGCTCGCAAGAAACTCCGATACCACTGGCCACTAAGATCCAAGCCTGCCTATCGATTCAGATTTTAGCCACGGACAGGTTGTCAACGCAGATATGTACACAGTGTGTGAAAAATGTGAATCAGTGGCATAATTATAAGGAAGCTTGCCTTCGCTCGCAAGATAAATTACACCAATGGTTGGAGAGACATGTACGATGCAATCCGATGGTTGTGACTATCAAAGACGAACCCGTCGATCTGGACTTCTACGAAGATAATATTGAGGTCATTTCTGAATCTACCGTAGATTCAGACTTACAATCGACTAATATGGAAGAAAGTCACAACGACTCCGTAAACACACTTCACATCCAAGAGATAACCGACGATGAAGCGGATCATGTGAGAGTTACGCCAACGTTAACAAAAGATTTAGATATCTGTATAAAGCCAGAGGTGGTAGAGGACTGCGACACAGACTGTACTATAGAAATAGAATCTGTTACTGGCAGCGAACTGGTATTAAATCCCCTTTCGAACAAGGAAGATAGAGTAATGGAGGCTGATTCTACGCAGAAGTCCAAAGCGTCAACATCAGCAAGTAAAAAGAAACTGAGAAGGGGTCCTCATACTCATTACAGAGGAATACGTGCGTTTAAGCAAAAGTGCGTGCACTGTCAAATCTTTTTACATTCTAAATATTCATATTCCAAGCACATGGAGAGATTCCATACAGAAAAACAGAACGGTGATGCTGACGAACAGTTGAAAGACGAGGAAGAGGTTGAAGATCTGGAAGATGAGCTGATGAGTATGGAGAAAGACGCTCCGCTGACTCAAGTGCAGCAGAACATAATCAGTCAATTGAAAACGTTTTCGTGTTACTCCTGTCAGCAATCGTTCAGCGATCGTAGAAGTACGCTTTCTCATATTCGTCAACATATGCCGGATCTGAGACCGTACACGTGTATCGCGTGTTTAACAGAGTTCCCTGACCGCTCGATGTACAAACTGCATTGCGGCGCATCGTTCGAATGTGCGATGAAAATTGCTCTGGTGATACCGAGTGAGGGCGAAGAGAAATATTTTACGTGCAACATGTGTCTGCGTTCGATGCGAAACAGAAAAGAATTGCTCAGCCATCTTTCGAAACACTCCGACAAACAGTATCAACAACTAGTTTCACCGTCGCGATCACCTCCTAAACTGAAACCAATTTCACCTCTGCCGGCGCCTAAACAAGAATCTCCAACAAAGAAATCGATTGGAAGCGGACGTTTGGAAATTCCGTTCCCTTACAAAAACGGCGATCCAGCGCATAATCATATTTGCGATTTGTGCGGTATGATCTACAGATACAAGCCGAACATGTTGAAGCATAAAGACTTGTGTCAACGTTTGCAGCCGGGGATTCGAACCTCCTATAAATGCATACACTGTGGAATGACCTATCTGGTATTCAAAAAGTTCCACAACCACATCACTCTAGAGCATAAAAAGAAAGACTTCTTCTGTTCCGAGTGCGGTGCTAAATTCCGATCTCCTAGCGAGTATTTGACACATCACGATATGCATCGTGGCACACAGAAGAAGAAGTTGGTGCTGAAAAAGGTCGAACCATCTCCTAAGACTAGCACGCAGAACTTCTCATCGCCCATCAAAGATTGGGACACGTTCGAAGCTGAAATGAACACTAGTAGGATATCTGACAGCAACCGGTATAGTTGTGCTTTGTGCAACTTGGAATTTTCCACCAGAGCTGAACTGACAGAGCATAGGAACCTTCATCTCAAGGTTAAGATCTACTCGTGCGTGATCTGCCGCAGCATGTTCAGCAGTGCGGGCGCATTAGAGATCCACATGAAGGACCATGGCATAGAGGACCCCAACGAGAGAAACGCGAACAGCTCGTGCGTAGAGTATGGAACAATGAATAATTCTTCAGAAGATTGTAAACCGATGAATATGAGCGCCACCTCAGACCCGGGTAACGAAAAGAACGAATGTCGCGAATGCGGCAAAGTATTCTCGAACTATGCGAACGTTAGACGACACATACGTAACATTCATAAGACTAACAAGTATCGTGTCAGTTGCAATCAATGTTCTCGGAAGTTCAAGAGCAAGGAGGCCTTGGGCAGGCACATCGCGAGCGAGCACAAGGTCACCAAGGCTATTCGCCAGTGTCCTCAGTGTCCGAAAACCTTCGTCTTCCAAGCGAACTTGGACCTTCACTTTCAGACCGCTCACCACAACAAGAGGAGTGGTGGTTATAAATGCGATATTTGCGGCAAGGCGTTCCTCGAGGAAGCATCCCTGAAAATACACCGAGGATGGCACAACAGAACGAACTCTCGACTGAGCTTGCGAACAACGCCGAAAACGCCAGAAGATCGGAAACCGGCCAAAGATACGCTCACGCCTAAGCAGGAGAAGGAGTTCAATACCAGTTCCAATAAGCCCGCCAGAGCCAGAAAATCATTTCCTAATTCGCCTCCCGTGAAACCTGAGGGTAAATTTCAGTGTCAGGTATGCAACGACAAGTTCAACGATGTCACCGAGTTGAGGAAACACTTGTGGGACGTCCACTGTTCCCACAAAACCGAGAAAAGTTTTGCAGACGAAGAGTTCCCGTGCGAGATCTGCAGCCATATCTTCCCTGACAAAGAGTCGCTGACCATGCACATGGAGTGGCACAAATCGTGTCCGGACCTGAGTCGCGGCAGGAAAGCCAAGAACCAGGGTAACTTCCCCTGCGACGTTTGCGGGAAATTCTACAGCTCGAAGAAGGTGCTATGGAGACACAAGAAGCTTCATAAAGCGACGAACCTCGCCGCCCTTAAGTTGCAATCGGTAGTCAAGAAGCCGATCCCGAATCAGCACATATGCAACATTTGCCACAAGATCTTCTGCAGCAATCAGTCCCTGCTACGTCACAGGATGAACCTGCACAACGATTTATCCAACCAGCGGCCGCAGTCGATGTTCTCTGGCACGAGAAGGATGCCCCAGGAGGGGCCTAAAGTGAAGAAGATGAAACTAGAGGAAGACGAGGAGGTGGAGGAGTTTTTGCGAAAACCCGTGGTAGTCGGAAATTCAACGAACGTCGGCAAGAAGCCGGTCATGTGTCACGTCTGCAGCAAGTTCTTCGCGAACATGAGCGTGCTATATAAACACAAACAATTGATGCACAGCAAGTCTCGGCCGACAAAGATCATGGGGAAGGCGTCTTCGTCCATGTCCTCGAGCTCGACCTCGCAATGTATTCCGTTGACCGGAGACGATGGCAAAGTTTCCTGCAACGTCTGCTACAAGTCGTTCTCCGCGATATCGCATCTGCGCCAGCACTTCACCATCAAGCACAAGAACAGCCCACCCAAGTTCGCCTGTCCCGTCGACGGTTGCAAGCTGATGTTCCCATCTGCGGCGGCTTTGAGGGCCCACGAAGTATCCCACACCAGCATGATCTTCAACTGTAATCTGTGCCGTCGCCATATGTTCAACAGGCAGGCGATGACCGACCACATGCTGACCGCGCATAACACCGTTTACGATGCTGAAAAGAGCAAGAACTTTCACAGAGAGACGGACCTGAGTCTCTACGTGGTGCAAAATGCGGTCGACGCGACTTGCCCTCACTGCAAGATCAAGTATCCCAACAACAGAGCCATGAAGATCCATTACTTTAAGTTCCACGATTACTTACAATAA
Protein Sequence: MDEVVVLQNMENVCRLCLSGDEPKLSVFGSQETPIPLATKIQACLSIQILATDRLSTQICTQCVKNVNQWHNYKEACLRSQDKLHQWLERHVRCNPMVVTIKDEPVDLDFYEDNIEVISESTVDSDLQSTNMEESHNDSVNTLHIQEITDDEADHVRVTPTLTKDLDICIKPEVVEDCDTDCTIEIESVTGSELVLNPLSNKEDRVMEADSTQKSKASTSASKKKLRRGPHTHYRGIRAFKQKCVHCQIFLHSKYSYSKHMERFHTEKQNGDADEQLKDEEEVEDLEDELMSMEKDAPLTQVQQNIISQLKTFSCYSCQQSFSDRRSTLSHIRQHMPDLRPYTCIACLTEFPDRSMYKLHCGASFECAMKIALVIPSEGEEKYFTCNMCLRSMRNRKELLSHLSKHSDKQYQQLVSPSRSPPKLKPISPLPAPKQESPTKKSIGSGRLEIPFPYKNGDPAHNHICDLCGMIYRYKPNMLKHKDLCQRLQPGIRTSYKCIHCGMTYLVFKKFHNHITLEHKKKDFFCSECGAKFRSPSEYLTHHDMHRGTQKKKLVLKKVEPSPKTSTQNFSSPIKDWDTFEAEMNTSRISDSNRYSCALCNLEFSTRAELTEHRNLHLKVKIYSCVICRSMFSSAGALEIHMKDHGIEDPNERNANSSCVEYGTMNNSSEDCKPMNMSATSDPGNEKNECRECGKVFSNYANVRRHIRNIHKTNKYRVSCNQCSRKFKSKEALGRHIASEHKVTKAIRQCPQCPKTFVFQANLDLHFQTAHHNKRSGGYKCDICGKAFLEEASLKIHRGWHNRTNSRLSLRTTPKTPEDRKPAKDTLTPKQEKEFNTSSNKPARARKSFPNSPPVKPEGKFQCQVCNDKFNDVTELRKHLWDVHCSHKTEKSFADEEFPCEICSHIFPDKESLTMHMEWHKSCPDLSRGRKAKNQGNFPCDVCGKFYSSKKVLWRHKKLHKATNLAALKLQSVVKKPIPNQHICNICHKIFCSNQSLLRHRMNLHNDLSNQRPQSMFSGTRRMPQEGPKVKKMKLEEDEEVEEFLRKPVVVGNSTNVGKKPVMCHVCSKFFANMSVLYKHKQLMHSKSRPTKIMGKASSSMSSSSTSQCIPLTGDDGKVSCNVCYKSFSAISHLRQHFTIKHKNSPPKFACPVDGCKLMFPSAAALRAHEVSHTSMIFNCNLCRRHMFNRQAMTDHMLTAHNTVYDAEKSKNFHRETDLSLYVVQNAVDATCPHCKIKYPNNRAMKIHYFKFHDYLQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00763380;
90% Identity: iTF_00861346;
80% Identity: -