Avir031530.1
Basic Information
- Insect
- Agapostemon virescens
- Gene Symbol
- -
- Assembly
- GCA_028453745.1
- Location
- CM052085.1:9077611-9081880[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 2.3 3.2e+02 2.8 0.2 3 17 60 74 58 75 0.91 2 21 1.9 2.6e+02 3.1 5.7 2 23 243 265 242 265 0.96 3 21 0.014 1.9 9.8 2.5 1 23 313 335 313 335 0.97 4 21 0.18 24 6.3 1.6 1 23 384 406 384 406 0.98 5 21 0.09 13 7.2 0.5 1 19 462 480 462 482 0.93 6 21 0.00026 0.036 15.3 1.2 1 23 523 545 523 545 0.96 7 21 0.003 0.42 11.9 0.1 1 23 594 616 594 616 0.97 8 21 0.00066 0.092 14.0 0.1 1 23 622 644 622 644 0.97 9 21 2.6e-06 0.00036 21.5 0.3 2 23 688 710 688 710 0.96 10 21 8.7e-05 0.012 16.7 0.4 2 23 718 740 717 740 0.95 11 21 1.9e-05 0.0026 18.8 0.3 2 23 748 770 748 770 0.97 12 21 0.00011 0.015 16.4 0.0 1 23 778 800 778 800 0.94 13 21 0.031 4.3 8.7 0.4 1 20 861 880 861 880 0.97 14 21 0.002 0.28 12.4 0.1 2 23 899 920 898 920 0.96 15 21 6.7e-05 0.0093 17.1 0.9 1 23 939 961 939 961 0.97 16 21 0.0019 0.27 12.5 6.0 2 23 984 1006 984 1006 0.92 17 21 0.021 2.9 9.2 1.8 2 23 1069 1091 1068 1091 0.93 18 21 0.0066 0.92 10.8 2.2 3 23 1123 1144 1121 1144 0.91 19 21 0.0015 0.21 12.8 0.0 1 23 1151 1175 1151 1175 0.95 20 21 0.0052 0.73 11.1 1.1 1 23 1180 1203 1180 1203 0.97 21 21 0.045 6.3 8.2 2.3 2 23 1233 1255 1233 1255 0.94
Sequence Information
- Coding Sequence
- ATGGACGAGGTGGTGGTGTTGCAGAACATGGAAAATGTGTGCAGGCTTTGTCTCTCCGAGGACGAGCCGAAATTATCGGTGTTCGGGGCGCAAGAAACTCCGGTATCACTGGCTACTAAGATACAAACTTGCCTATCGATTCAGATTTTAGCCACGGACAGGTTGTCAACGCAAATATGTACACATTGTGTTAAAAATGTGAATCAGTGGCATAATTATAAAGAAGCTTGCCTTCGATCGCAAGATAAATTACATCAATGGTTGGAAAAGCATATACAGTGTAGTCCAATGGTTATAACTATCAAAGACGAACCTGTTGATCTGGACTTCTACGAAGACAATATCGAGGTCATTTCTGAATCGACCATCGATTCAGATTTAGAGTCAACTAACCTCGAAGAAAGTCTTGACGACTCTATAAACACGCTTCACGTCCAAGAGATAACCGACGATGAAATGGATCATGCAAGAGTTCCGCCAACATTGACAAAAGATTTAGATATCTGTATAAAGCCAGAACTGCCAGAGGATTATGACACTGACTGTACTATAGAGATAGAATCTGTTACTGGCAGCGAACTGGTACTAAACCCTCTTTCGAATAAGGAAGATAGAGTAATGGAAGCTGACTCTACGCAAAAGTTTAGCGCATCAACATCAGCAAGTAAAAAGAAAATTAGAAGAGGTCCTCATACTCATTACAGAGGAACACGTGCATTTAAGCAAAAGTGTGTTCACTGTCAAATCTTTTTACATTCTAAATATTCCTATTCTAAGCATATGGAAAGATTCCATACAGAAATACAGAATGGGGATGCCGATGAACAGTTGAAAGATGAGGAAGAGGTTGAAGATCTGGAAGATGAACTGATGAGTATGGAGAAAGACGCTCCGCTGACTCAAGTGCAGCAGAATATAATCAGTCAATTGAAAACGTTTTCGTGTTACTCTTGTCAGCAATCGTTCAGCGATCGCAGAAGTACGCTTTCTCATATTCGGCAGCATATGCCGGATCTGAGACCGTATACTTGTATTGCATGTTTAACAGAGTTTCCCGATCGCTCGATGTATAAGTTACATTGCGGAGCATCGTTCGAATGTGCAATGAAAATTGCTCTGGTGATACCGAATGAGGGCGATGAGAAATATTTCACGTGTAACATGTGTTTGCGTTCGATGCAGAACAGAAAAGAATTGCTCAGCCATCTTTCCAAACACTCTGACAAACAATATCAACAATTAGTTTCGCCATCGCGATCACCTCCTAAACTCAAACCAATTTCACCTCTACCGGCGATTAAACAGGAATCTCTTGCAAAGAAATCAATGGGTGAGGGTCTGGAAATTCCCCTCCCTTACAAAAACGGTGATCCAGCACATAATCACTTTTGCGATTTATGCGGTATGATCTACAGATACAAGCCTAACATGCTGAAGCATAAAGACTTGTGTCAGCGTTTGCAGCCGGAGATTCGTACCTCCTACAAATGTATACACTGTGGAATGACCTATCTGGTGTTCAAAAAGTTCCACAACCATATCACTATAGACCATAAAAAGAAAGATTTCTTCTGTTCCGAATGTGGCGCTAAATTCAGATCTCCGAGTGAGTATTTGACGCACCACGAGATACATCGGGGCAAACCGATCAGGAAGCCAGTGTTGGAAAGGAATGAACCACTTTCTATGAATAATGCACAAACCTTCTCAACACCTGTCAAAGATTGGGATACGTTCGAGGCTGAAATGAACGCTCGTAGGTTGTCCGATAATAACCAATATAGTTGTGCTTTGTGCAACTTAGAGTTTGGCAGAAGAGCTGAATTAATAGAGCATAGGAACCTTCATCTAAAGGTTAAGATCTATTCCTGCGTGATTTGCCGCAGCATGTTCAGCAGTGCGGGTGCTTTGGAGATTCACATGAAGGACCATGGCATCGAGGACCCCAACGAGAGAAATGCGAACAGCTCGTGCGTAGAATACGGAACTATGAACAATACTTCAGATGATTGTAAACCGCTGAATGTGAGCGCTACCTCAGACCCGGGTACCAACAAAAACGAGTGTCGCGAATGTGGCAAGGTATTCTCGAACTATGCCAATGTCAGACGACACATACGTAACATTCATAAGACTAACAAGTACCGCATCAGTTGCTCTCAATGTCCCCGCAAGTTCAAGAGTAAGGAAGCCTTGGACAGACACATCTCTAGCGAGCATAAGCCCAACAAGCCGGTTCGCCAGTGTCCCCAGTGTCCGAAGACCTTCGTTTTCCAAGCGAACTTGAATCTTCACTTCCAGACCGCTCACAATAACAAGAAGAGCGGTGGCTACGAATGCGATATTTGTGGCAAGGCGTTCATAGAGGAAGCTTCTCTCAAAATACATCGAGGATGGCACAACAGAACGAATTCTCGGTTAAGTTTGCGAACAGCGCCGAGAGCGGTAGAAGAGCGGAAACCGGGCAAGGATGTAGTACTCATGCCTAAACAGGAAAAGGAGTTCAATACCAGTTCCGACAAGCCCGCCAGAGCCAGGAAATCTTTCCCGAATTCGCCACCGATGAAACCAGAGGGTAGATTCCAGTGTCAGGTATGCAACGACAAGTTCAACGATGTTACCGAATTGAGGAAACATTTGTGGGACGTACATTGCTCCCACAAAACTGAGAAACCTTATACGGGCGAAGAGTTGACGTGCGAGATCTGCAGCAACATCTTCTCCGACAAAGAGACGCTAGACATACATATGGAGTGGCACAAGGGATGTCCGAACTTGAGTGGTAGCGTAAGAAGAGCTAGACACCAGGGTAACTTCCCGTGCGACGTTTGCGGGAAATTCTATAGCTCGAAGAAAGTGCTATGGAGACACAAGAAACTCCACAAAGCGACGAACATCGCCGTCGTTAAGTTGCAATCGGTAACCAAGAAGCCAATGCCTAATCTGAACACGTGCAATATTTGCCACAAAAACTTTTGCAGCAATCAGACTCTGCAACGTCACAAGGCAAATCTGCACGGCGATGTAGTCAATCAGCGGCCGCAAACGTTGTTCTCCGGCAGGAGGAGCCTATCCCAGGAGGGACCTGTCACAAAGAAAATGAAACTAGAGGATGACAGACAGGAAGAGGAGAAGGAGGAGGAAAAGGTTATGCAGAAACCCGTGGTAGTCGGAAATTCAATGAACGTTGGCAAGAAACCAGTCATGTGTCATGTCTGCAGAAAGTTCTTCGCGAACATGAGCGTCTTGTACAAACATAAGCAATTAATGCACAGTAAGTCCCGGCCGATCAAGAGCCCCGTGAAAGCGCCCACATCCACGACCTCGCAATGTATCCCGTTGACAGGAGACGATGGCAAAGTTTGCTGTAACGTCTGCTACAAGTCGTTCTCCGCCATATCGAACCTGCGTCAGCATTTCACCATCAAGCACAAGAACAGCCCACCCAAGTTCGCATGTCCCATCGACGGCTGCAAGCTGATGTTCCCTTCGTCGTCGGCTCTGAGAGTTCACGAGCTGTCCCACACCAGCATGATCTTCAATTGCAATCTGTGCGGTCGCCACGTGTTCAACAGGCAGGCGATGACCGATCACATGCTGACCGCGCACAACACCGTTTACGATGCTGGAAAGAGCAAGAACTTCCACAGAGAGACGGACTTGAGTCTGTACGTGGTACAGAACGCGGTCGACGCGACTTGTCCTCACTGCAAGATCAAATATCCCAACAACAGAGCCATGAAGATCCACTACTTCAAGTTCCACGACTACTCAGAATAA
- Protein Sequence
- MDEVVVLQNMENVCRLCLSEDEPKLSVFGAQETPVSLATKIQTCLSIQILATDRLSTQICTHCVKNVNQWHNYKEACLRSQDKLHQWLEKHIQCSPMVITIKDEPVDLDFYEDNIEVISESTIDSDLESTNLEESLDDSINTLHVQEITDDEMDHARVPPTLTKDLDICIKPELPEDYDTDCTIEIESVTGSELVLNPLSNKEDRVMEADSTQKFSASTSASKKKIRRGPHTHYRGTRAFKQKCVHCQIFLHSKYSYSKHMERFHTEIQNGDADEQLKDEEEVEDLEDELMSMEKDAPLTQVQQNIISQLKTFSCYSCQQSFSDRRSTLSHIRQHMPDLRPYTCIACLTEFPDRSMYKLHCGASFECAMKIALVIPNEGDEKYFTCNMCLRSMQNRKELLSHLSKHSDKQYQQLVSPSRSPPKLKPISPLPAIKQESLAKKSMGEGLEIPLPYKNGDPAHNHFCDLCGMIYRYKPNMLKHKDLCQRLQPEIRTSYKCIHCGMTYLVFKKFHNHITIDHKKKDFFCSECGAKFRSPSEYLTHHEIHRGKPIRKPVLERNEPLSMNNAQTFSTPVKDWDTFEAEMNARRLSDNNQYSCALCNLEFGRRAELIEHRNLHLKVKIYSCVICRSMFSSAGALEIHMKDHGIEDPNERNANSSCVEYGTMNNTSDDCKPLNVSATSDPGTNKNECRECGKVFSNYANVRRHIRNIHKTNKYRISCSQCPRKFKSKEALDRHISSEHKPNKPVRQCPQCPKTFVFQANLNLHFQTAHNNKKSGGYECDICGKAFIEEASLKIHRGWHNRTNSRLSLRTAPRAVEERKPGKDVVLMPKQEKEFNTSSDKPARARKSFPNSPPMKPEGRFQCQVCNDKFNDVTELRKHLWDVHCSHKTEKPYTGEELTCEICSNIFSDKETLDIHMEWHKGCPNLSGSVRRARHQGNFPCDVCGKFYSSKKVLWRHKKLHKATNIAVVKLQSVTKKPMPNLNTCNICHKNFCSNQTLQRHKANLHGDVVNQRPQTLFSGRRSLSQEGPVTKKMKLEDDRQEEEKEEEKVMQKPVVVGNSMNVGKKPVMCHVCRKFFANMSVLYKHKQLMHSKSRPIKSPVKAPTSTTSQCIPLTGDDGKVCCNVCYKSFSAISNLRQHFTIKHKNSPPKFACPIDGCKLMFPSSSALRVHELSHTSMIFNCNLCGRHVFNRQAMTDHMLTAHNTVYDAGKSKNFHRETDLSLYVVQNAVDATCPHCKIKYPNNRAMKIHYFKFHDYSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00763380;
- 90% Identity
- -
- 80% Identity
- -