Basic Information

Insect: Lasioglossum leucozonium
Gene Symbol: -
Assembly: GCA_028454225.1
Location: CM052212.1:11240825-11245109[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 22 9.4 6.7e+02 1.1 0.1 3 17 60 74 59 75 0.91

2 22 2.2 1.6e+02 3.1 5.7 2 23 243 265 242 265 0.96

3 22 0.017 1.2 9.8 2.5 1 23 313 335 313 335 0.97

4 22 0.21 15 6.3 1.6 1 23 384 406 384 406 0.98

5 22 0.065 4.6 7.9 0.2 1 19 462 480 462 482 0.93

6 22 6.3 4.5e+02 1.7 4.2 1 23 495 518 495 518 0.86

7 22 0.00044 0.031 14.7 1.4 1 23 523 545 523 545 0.96

8 22 0.00031 0.022 15.2 0.3 1 23 595 617 595 617 0.97

9 22 0.00079 0.056 13.9 0.1 1 23 623 645 623 645 0.97

10 22 3.1e-06 0.00022 21.5 0.3 2 23 689 711 689 711 0.96

11 22 0.00027 0.019 15.4 0.5 2 23 719 741 718 741 0.94

12 22 2.3e-05 0.0016 18.8 0.3 2 23 749 771 749 771 0.97

13 22 6.3e-05 0.0044 17.4 0.0 1 23 778 800 778 800 0.94

14 22 0.036 2.6 8.7 0.4 1 20 860 879 860 879 0.97

15 22 0.00049 0.035 14.6 0.6 1 23 897 919 897 919 0.97

16 22 4.4e-05 0.0031 17.9 0.9 1 23 937 959 937 959 0.97

17 22 0.0013 0.095 13.2 6.8 1 23 981 1004 981 1004 0.95

18 22 0.025 1.7 9.2 1.8 2 23 1066 1088 1065 1088 0.93

19 22 0.0022 0.15 12.6 0.7 2 23 1129 1151 1128 1151 0.92

20 22 0.013 0.93 10.1 0.0 1 23 1158 1182 1158 1182 0.93

21 22 1.3 92 3.8 2.3 1 23 1187 1210 1187 1210 0.96

22 22 0.053 3.8 8.2 2.3 2 23 1240 1262 1240 1262 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	22	9.4	6.7e+02	1.1	0.1	3	17	60	74	59	75	0.91
2	22	2.2	1.6e+02	3.1	5.7	2	23	243	265	242	265	0.96
3	22	0.017	1.2	9.8	2.5	1	23	313	335	313	335	0.97
4	22	0.21	15	6.3	1.6	1	23	384	406	384	406	0.98
5	22	0.065	4.6	7.9	0.2	1	19	462	480	462	482	0.93
6	22	6.3	4.5e+02	1.7	4.2	1	23	495	518	495	518	0.86
7	22	0.00044	0.031	14.7	1.4	1	23	523	545	523	545	0.96
8	22	0.00031	0.022	15.2	0.3	1	23	595	617	595	617	0.97
9	22	0.00079	0.056	13.9	0.1	1	23	623	645	623	645	0.97
10	22	3.1e-06	0.00022	21.5	0.3	2	23	689	711	689	711	0.96
11	22	0.00027	0.019	15.4	0.5	2	23	719	741	718	741	0.94
12	22	2.3e-05	0.0016	18.8	0.3	2	23	749	771	749	771	0.97
13	22	6.3e-05	0.0044	17.4	0.0	1	23	778	800	778	800	0.94
14	22	0.036	2.6	8.7	0.4	1	20	860	879	860	879	0.97
15	22	0.00049	0.035	14.6	0.6	1	23	897	919	897	919	0.97
16	22	4.4e-05	0.0031	17.9	0.9	1	23	937	959	937	959	0.97
17	22	0.0013	0.095	13.2	6.8	1	23	981	1004	981	1004	0.95
18	22	0.025	1.7	9.2	1.8	2	23	1066	1088	1065	1088	0.93
19	22	0.0022	0.15	12.6	0.7	2	23	1129	1151	1128	1151	0.92
20	22	0.013	0.93	10.1	0.0	1	23	1158	1182	1158	1182	0.93
21	22	1.3	92	3.8	2.3	1	23	1187	1210	1187	1210	0.96
22	22	0.053	3.8	8.2	2.3	2	23	1240	1262	1240	1262	0.94

Sequence Information

Coding Sequence: ATGGACGAGGTGGTGGTGTTGCAGAACATGGAAAATGTGTGCAGGCTCTGCCTCTCCGGCGACGAGCCGAAATTGTCGGTGTTCGGGGTGCAAGAAACTCCGGTATCACTGGCCACTAAGATACAAGCCTGCCTATCGATTCAGATTTTAGCCACGGACAAGTTGTCAACGCAGATATGTACACAGTGTGTGAAAAATGTGAATCAGTGGCATAATTATAAGGAAGCTTGCCTTCGCTCGCAAGATAAATTACATCAATGGTTGGAAAGACACGTACGATGCAATCCAATGGTTATCACTATCAAAGATGAGCCCGTTGATTTGGACTTCTACGAAGATAATATTGAGATCATTTCTGAATCCACCGTTGATTCGGACTTAGAATCAACCAATATCGAAGAAACTCATAACGACTCGGTAAACACGCTTCACATCCAAGAGATAACCGACGATGAAGCGGATCATCCAAGAGTTACTCCAACATTAACGAAAGATTTAGATATGTGTATAAAGTCAGAGCCAGCAGAGGACTGCGACACGGACTGTACTATAGAAATAGAATCTGTTACTGGCAGCGAACTGGTATTAAACCCCCTTTCGAACAAGGAAGACAGAGTAATGGAGGCTGATTCTACGCAGAAGTCCAGAGCATCAACATCGGCAAGTAAAAAGAAAATGAGAAGGGGTCCCCATACTCATTACAGGGGAATACGTGCATTTAAGCAAAAGTGCGTGCACTGTCAAATCTTTTTACATTCTAAATATTCGTATTCCAAGCACATGGAAAGATTCCATACGGAAAAACAAAATGGTGATGCTGACGAACAGTTGAAAGATGAGGAAGAGGTTGAAGATCTGGAAGATGAGCTGATGAGCATGGAGAAAGACGCTCCGCTGACTCAGGTGCAACAGAACATAATCAGTCAATTGAAAACGTTTTCGTGTTACTCCTGTCAGCAATCTTTCAGCGATCGTAGAAGCACGCTCTCTCATATTCGTCAACATATGCCGGATCTGAGACCGTACACGTGTATCGCGTGTTTAACAGAGTTCCCTGACCGCTCGATGTACAAACTGCACTGCGGCGCGTCGTTCGAGTGTGCAATGAAAATTGCTCTGGTGATACCGAGCGAGGGCGAAGAGAAATATTTCACATGTAACATGTGTCTGCGTTCGATGCAAAACAGAAAAGAATTGCTCAGCCATCTTTCCAAACACTCCGACAAACAGTATCAACAGCTAGTTTCTCCATCGCGATCGCCTCCTAAACTCAAACCAATTTCACCTCTGCCGGCGTCTAAACAAGAATCTCCTACAAAGAAATCCATCGGAGGCGGTGTGGAAGTCCCCTTACCTTACAAAAACGGCGATCCAGCACACAATCACATTTGCGATTTGTGCGGCATGATCTACAGATACAAGCCCAACATGCTGAAGCATAAAGATTTGTGTCAGCGTTTGCAGCCGGGGATTCGAACCTCCTACAAATGCATGCACTGCGGAATGACCTATCTGGTGTTCAAAAAGTTCCACAACCACATCACTATAGACCATAAAAAGAAAGACTTCTTCTGTTCCGAATGCGGTGCTAAATTTAGATCTCCAAGCGAGTATTTGTCGCATCACGATATGCATCGTGGCACACAGAAGAAGAAGCCGGTGCTGGATAAAGTCGAAACATCTCCTAAGGTTAACACGCAAAATTCATTCTCATCGCCCATCAAAGACTGGGACACGTTCGAGGCTGAAATGAACGCTAGTAGGATATCTGACAGCAACCGGTATAGTTGTGCTTTGTGCAACTTAGAATTCTCCACCAGAGCCGAACTGACAGAGCACAGGAACCTTCACCTGAAGGTTAAGATTTATTCCTGCGTGATCTGTCGCAGCATGTTCAGCAGTGCGGGCGCTTTGGAGATCCACATGAAGGACCATGGCATAGAGGATCCCAACGAGAGAAACGCGAACAGCTCGTGCGTAGAGTATGGAACCATGAACAACAGTTCAGAGGATTGTAAACCGGTGAACATGAGCTCGACCTCGGACCCGGGCAACGACAAGAACGAATGTCGCGAATGCGGCAAGGTATTCTCGAACTATGCGAACGTCAGACGACACATACGTAACATTCATAAGACTAACAAGTATCGCCTCAGTTGCAATCAATGCTCTCGGAAGTTCAAGAGCAAGGAAGCCTTGGGCAGGCACATCGCGAGCGAGCACAAGGTCGGCAAGGCTGTTCGCCAGTGTCCCCAGTGCCCGAAGACCTTCGTCTTCCAAGCCAACTTGAACCTTCACTTCCAGACCGCTCACAACAACAAGAGCGGCGGTTACAAATGCGACATCTGCGGCAAGGCGTTCATAGAGGAGGCGTCCCTAAAAATACACCGAGGATGGCACAACAGAACGAACTCTCGGCTGAGCTTGCGAACAACGCCGAAAACGCCAGAAGATCGGAAACCGGCCAAGAATACGCTAACGCCTAAACAGGAGAAGGAGTTCAATACCAGTTCCGACAAGCCGGCCAGGGCCAGAAAATCGTTTCCCAATTCACCACCGGTGAAGCCCGAGGGTAAATTTCAGTGTCAGGTATGCAACGACAAGTTCAACGATGTCACCGAGTTGAGGAAACACTTGTGGGACGTTCACTGTTCCCACAAAACCGAGAAAACCTTTGCGGGCGAAGAGTTCACGTGCGAGATCTGTAGCCATATCTTCCCCGACAAAGAGACGTTCGAAATGCACATGGAGTGGCACAAGTCGTGCCCGAACCTGAGTCCCGTCAGAAAAGCTAGGAACCAGGGTAACTTCCCGTGCGACATTTGCGGGAAATTCTACAGCTCGAAGAAGGTGCTATGGAGACACAAGAAGCTTCACAAAGCGACCAACCTAGCCGCCGTTAAGCTGCAATCGGTGGCCAAGAAGCCGATCCCGAATCAGCACATGTGCAACATTTGCCACAAGATCTTCTGCAGCAACCAGTCCCTGCTACGTCACAGGATGAACCTGCACAACGATTTATCCAACCAGCGGTCGCCGTCGATGTTCTCTGGCACGAGAAGGATGACCCAGGAGGGGCCTAAAGCGAAGAAGATGAAATTAGAGCATGACGAGGACGCAGAGGAGGACGACGAGGAGGTCCTGCGGAAACCCGCGATAGTCGGAAATTCAATGAACACCGGCAAGAAGCCGGTCATGTGTCACGTCTGCAGAAAGTTCTTCGCGAACATGAGCGTGCTGTATAAACACAAACAATTGATGCACAGCAAGTCTCGGCCGGTAAAGAACGCAGGAAAACCGTCCGTGCCCTCGGCCGCGTCTGCGTCCGCATCCACGTCCTCTACCTCGCAATGTATCCCGCTGGCCGGAGATGATGGCAAAGTTTCCTGCAACGTCTGTTACAAGACGTTCTCCGCCGTATCAAACCTGCGCCAGCACTTCACCATCAAGCACAAGAACAGCCCACCGAAGTTCGCCTGTCCCATCGACGGCTGCAAGCTGATGTTCCCGTCTTCGGCGGCTCTGAGAGCCCACGAGGTGTCCCACACCAGCATGATATTCAACTGTAATCTGTGCCGTCGGCATATGTTCAACAGGCAGGCGATGACCGACCATATGCTGACCGCGCACAACACCGTCTACGACGCCGAGAAGAGCAAGAACTTCCACCGTGAGACGGATCTGAGTCTGTACGTGGTGCAGAACGCGGTCGACGCGACTTGTCCCCACTGCAAGATCAAGTATCCGAACAACAGAGCTATGAAGATCCATTACTTCAAGTTTCACGACTACCTAGAATAA
Protein Sequence: MDEVVVLQNMENVCRLCLSGDEPKLSVFGVQETPVSLATKIQACLSIQILATDKLSTQICTQCVKNVNQWHNYKEACLRSQDKLHQWLERHVRCNPMVITIKDEPVDLDFYEDNIEIISESTVDSDLESTNIEETHNDSVNTLHIQEITDDEADHPRVTPTLTKDLDMCIKSEPAEDCDTDCTIEIESVTGSELVLNPLSNKEDRVMEADSTQKSRASTSASKKKMRRGPHTHYRGIRAFKQKCVHCQIFLHSKYSYSKHMERFHTEKQNGDADEQLKDEEEVEDLEDELMSMEKDAPLTQVQQNIISQLKTFSCYSCQQSFSDRRSTLSHIRQHMPDLRPYTCIACLTEFPDRSMYKLHCGASFECAMKIALVIPSEGEEKYFTCNMCLRSMQNRKELLSHLSKHSDKQYQQLVSPSRSPPKLKPISPLPASKQESPTKKSIGGGVEVPLPYKNGDPAHNHICDLCGMIYRYKPNMLKHKDLCQRLQPGIRTSYKCMHCGMTYLVFKKFHNHITIDHKKKDFFCSECGAKFRSPSEYLSHHDMHRGTQKKKPVLDKVETSPKVNTQNSFSSPIKDWDTFEAEMNASRISDSNRYSCALCNLEFSTRAELTEHRNLHLKVKIYSCVICRSMFSSAGALEIHMKDHGIEDPNERNANSSCVEYGTMNNSSEDCKPVNMSSTSDPGNDKNECRECGKVFSNYANVRRHIRNIHKTNKYRLSCNQCSRKFKSKEALGRHIASEHKVGKAVRQCPQCPKTFVFQANLNLHFQTAHNNKSGGYKCDICGKAFIEEASLKIHRGWHNRTNSRLSLRTTPKTPEDRKPAKNTLTPKQEKEFNTSSDKPARARKSFPNSPPVKPEGKFQCQVCNDKFNDVTELRKHLWDVHCSHKTEKTFAGEEFTCEICSHIFPDKETFEMHMEWHKSCPNLSPVRKARNQGNFPCDICGKFYSSKKVLWRHKKLHKATNLAAVKLQSVAKKPIPNQHMCNICHKIFCSNQSLLRHRMNLHNDLSNQRSPSMFSGTRRMTQEGPKAKKMKLEHDEDAEEDDEEVLRKPAIVGNSMNTGKKPVMCHVCRKFFANMSVLYKHKQLMHSKSRPVKNAGKPSVPSAASASASTSSTSQCIPLAGDDGKVSCNVCYKTFSAVSNLRQHFTIKHKNSPPKFACPIDGCKLMFPSSAALRAHEVSHTSMIFNCNLCRRHMFNRQAMTDHMLTAHNTVYDAEKSKNFHRETDLSLYVVQNAVDATCPHCKIKYPNNRAMKIHYFKFHDYLE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00763380;
90% Identity: iTF_00861346;
80% Identity: -