Gang028022.1
Basic Information
- Insect
- Germaria angustata
- Gene Symbol
- -
- Assembly
- GCA_963681545.1
- Location
- OY813001.1:69154235-69160487[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00017 0.022 16.5 0.3 1 23 124 147 124 147 0.97 2 13 5.7e-05 0.0072 18.0 1.4 2 23 153 175 152 175 0.97 3 13 8.7e-07 0.00011 23.7 3.4 1 23 184 207 184 207 0.97 4 13 6.1e-06 0.00076 21.0 5.0 2 23 441 462 441 462 0.98 5 13 6.8e-07 8.6e-05 24.0 3.2 1 23 468 491 468 491 0.96 6 13 0.00047 0.06 15.1 2.1 1 23 496 519 496 519 0.98 7 13 5.1e-05 0.0065 18.1 1.0 1 23 530 552 530 552 0.96 8 13 0.0047 0.59 12.0 4.1 1 23 557 580 557 580 0.97 9 13 0.0001 0.013 17.2 1.5 1 23 586 608 586 608 0.96 10 13 0.00013 0.016 16.9 1.9 1 23 614 636 614 636 0.98 11 13 6.5e-07 8.2e-05 24.1 1.6 3 23 644 664 643 664 0.99 12 13 4.5e-07 5.7e-05 24.6 0.3 1 23 670 692 670 692 0.99 13 13 0.0024 0.3 12.9 0.2 1 23 697 720 697 720 0.98
Sequence Information
- Coding Sequence
- atggaaaaaagtacAAGTTATAATAAAAGCACAATTTGTCGCATATGCATGCAGAATAATGCTGATTTGTTTTCCATATTTAATGAAGTATTCTGCGGGAACAAAACCATTACTGTAGCTCAGATTATTTCAGAGTGTACAAAATATCCAGTAGCACATAATGATCAGCTACCAGCACAAATATGTAATTCCTGTATGGAAGCAGCTCAGAACGCCCTTCAGTTCAAAAAGCAAACAGAGGAGGCATATTGTCATCTAAAGGCTTTGTATGATATAACTTGGGTTCCCAAAGAGGAAAAGGGTAGTAGTGCTATGAGGGTGGGTGCCCTCACTACAGATAAGTATACACAAACTGAAAAAAGCAGTGTGTTTCAGTGTGAGATTTGCCCAAAGAAGTTTTTTGTGGAACGTGAATTAAGGGAACACCGTGCCACCATCCACATTAATGATGGCAAAAAATGTCGTGTATGTGGCGAAACATTCAATCATTTGGGTCAATTAAAGGTTCATTTATCAACAGAACATCCCAGCGAAGGTATACGTTGtgattttaaatgtaatatatgCTCCAGAGAGTTCACCCGCAAAGATCATTTGAAACGACATTTAATACGGGTACACAAGGTCGAAGATGACAAgttaaatatATCTAAAGTAACACTTGATGAACCTGAAATTGAAAATCCCACAGTTCTGTCAGCCAATTTGAATAACTACAGCAGTCATTGGCCAGATTACCAAACTGACAATGACAACGCACACAGTGGAATAGATAGTAAAAAACATGAAACTATCGCTGCTATAAATCCATTCTCGAGCGAGGATGAGGGACTGGATCACCACGACTTTAATGACATGGATACAGAAGATGTTAAACAATTCGTGGAAACAATCGCTCATCCAGAAATATCCATTAAAGTTGAAAATCCCGACACCagttatatttcaaatgacaaaAATGAAAGAGTTGCTAAATCCGTCAATAGTTCGTTTGATGAAATAACAACTCACATATCGGCGCTAAAGCCGGAAAAAGCAAACGATAGCTTAgaggtaaaagaaaattacgaCGAAGTGTGTGAAAGCAATAAAGAAGATTCGAATGATGACTACCATAGCAACAATAACTCCAGTGAAGATGTTACTGACGAAGAATATGACGATAATGGCGGTAATttggaaatttcaaaaaaatctaaaaaaaaattaatgccaaCGTCTATAAAACAAGAGCAAGCTGATGTACAAACTGAAGATCCTACAAGTTCAACTTCTAAACCACCAAGGCGACGTCATGGCTCTTCGAAGACCGAAGATAATCGTTGTAAAGAATGTAATCGCACATTTACCCGCTATAATCATTTGCTGCGCCATATGCTTACACATAGTGATGAAAAGCCTCATGTTTGCAGTTTTTGTGGTAAGGGATTTTCACGTTCGGACCACTTACAAAAACATATACAAAGTATACACTGTGAGAAGAACTACAAATGTGATCAGTGCTCAAGTGCTTACGGACGTAAAGATCATTTGCAAAGACATGTAGAAACAAGACATAACAAAGATCCTTCGGTACAAAAGCCTCAATATGATTGTGATATGTGTGAGAAAAAGTTCACCTCCAAAGCCTATTTGGCAAAACATAAACTGCTTCACACCGACCGCCTTTATGCCTGTAAACATTGTTCAGAAACTTTTCAAGAAAAGGAACAAATGAAGGAGcaccaaaagaaaaaacatactcAGCCACGCAATTTCTTGTGCAATATATGTGGAGATGCATTTCATCGAAATGAATATCTCAAAATTCACATGCGCCGTCATACTGGCGAGAAACCATATAAATGTCGTTTTTGTGAAAAAGGTTTTCCGCGTAGTACAGATTTGAAAATGCACGAAAGATATCATATCGGACATAAGCCAAATTTATGCAACCTATGCGGCAAAGGTTTTCACCGTCCCTACAATCTTACCATACACATGCGCACCCATACTGGGGAAAAACCTTACAAATGCAATCAATGTCCACAAGCATTTGCACAAAGTAATGATTTAAAGGCTCATATAAGACGTCATACAGGAGAACGATTTCGTTGTGATTTGTGCAGTGCTGCATTTCTGCAACGCTATGGCTTAAACGCTCACTTAAGGACAGTACATGGTATAATAGTTACTTCGTTTACAGGTCGCTTGCGTAGAACTGATCAGCCTATTGATGGTGCTGAGTTAGTTGATCAACAGCCACCCGCGGAGCCGCCACCGATACAAATTGAATCTGCACAAGAGCAGACTCAATGTTCGCTGCCTTCACCTGCGTTAGATAGCAAACTTACACCTCCACCTTTATATTTAGGTCATCACTTTATTAATCCCATACCAGCTGATGTCCCCGCTACACCAACATCCCCCATTGAAATTTCATCTACAAGTAATTCTTCGCTGCCTCATCTGCTACCGCATCCATCGTCGCAACAAATGTAA
- Protein Sequence
- MEKSTSYNKSTICRICMQNNADLFSIFNEVFCGNKTITVAQIISECTKYPVAHNDQLPAQICNSCMEAAQNALQFKKQTEEAYCHLKALYDITWVPKEEKGSSAMRVGALTTDKYTQTEKSSVFQCEICPKKFFVERELREHRATIHINDGKKCRVCGETFNHLGQLKVHLSTEHPSEGIRCDFKCNICSREFTRKDHLKRHLIRVHKVEDDKLNISKVTLDEPEIENPTVLSANLNNYSSHWPDYQTDNDNAHSGIDSKKHETIAAINPFSSEDEGLDHHDFNDMDTEDVKQFVETIAHPEISIKVENPDTSYISNDKNERVAKSVNSSFDEITTHISALKPEKANDSLEVKENYDEVCESNKEDSNDDYHSNNNSSEDVTDEEYDDNGGNLEISKKSKKKLMPTSIKQEQADVQTEDPTSSTSKPPRRRHGSSKTEDNRCKECNRTFTRYNHLLRHMLTHSDEKPHVCSFCGKGFSRSDHLQKHIQSIHCEKNYKCDQCSSAYGRKDHLQRHVETRHNKDPSVQKPQYDCDMCEKKFTSKAYLAKHKLLHTDRLYACKHCSETFQEKEQMKEHQKKKHTQPRNFLCNICGDAFHRNEYLKIHMRRHTGEKPYKCRFCEKGFPRSTDLKMHERYHIGHKPNLCNLCGKGFHRPYNLTIHMRTHTGEKPYKCNQCPQAFAQSNDLKAHIRRHTGERFRCDLCSAAFLQRYGLNAHLRTVHGIIVTSFTGRLRRTDQPIDGAELVDQQPPAEPPPIQIESAQEQTQCSLPSPALDSKLTPPPLYLGHHFINPIPADVPATPTSPIEISSTSNSSLPHLLPHPSSQQM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00900817; iTF_00760308; iTF_00899897; iTF_00435797; iTF_01397719; iTF_01398747; iTF_01074690; iTF_01399684;
- 90% Identity
- -
- 80% Identity
- -