Basic Information

Insect: Linnaemya vulpina
Gene Symbol: -
Assembly: GCA_963675445.1
Location: OY776280.1:73041233-73047038[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.00021 0.025 16.3 0.3 1 23 108 131 108 131 0.97

2 16 7e-05 0.0083 17.7 1.4 2 23 137 159 136 159 0.97

3 16 1.1e-06 0.00013 23.5 3.4 1 23 168 191 168 191 0.97

4 16 5.8e-05 0.0068 18.0 5.2 2 23 432 453 432 453 0.98

5 16 9.2e-06 0.0011 20.5 4.4 1 23 459 482 459 482 0.96

6 16 0.00053 0.063 15.0 1.4 1 23 487 510 487 510 0.98

7 16 6.3e-05 0.0075 17.9 1.2 1 23 521 543 521 543 0.95

8 16 0.015 1.8 10.4 3.2 1 23 548 571 548 571 0.96

9 16 3.4e-05 0.0041 18.7 0.8 1 23 577 599 577 599 0.96

10 16 0.00016 0.018 16.7 1.9 1 23 605 627 605 627 0.98

11 16 8e-07 9.4e-05 23.9 1.6 3 23 635 655 634 655 0.99

12 16 5.6e-07 6.6e-05 24.4 0.3 1 23 661 683 661 683 0.99

13 16 0.0029 0.34 12.7 0.2 1 23 688 711 688 711 0.98

14 16 0.0018 0.21 13.3 1.7 1 23 877 899 877 899 0.98

15 16 8.9e-07 0.00011 23.7 3.6 1 23 905 928 905 928 0.96

16 16 0.0055 0.65 11.8 2.7 1 23 933 957 933 957 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.00021	0.025	16.3	0.3	1	23	108	131	108	131	0.97
2	16	7e-05	0.0083	17.7	1.4	2	23	137	159	136	159	0.97
3	16	1.1e-06	0.00013	23.5	3.4	1	23	168	191	168	191	0.97
4	16	5.8e-05	0.0068	18.0	5.2	2	23	432	453	432	453	0.98
5	16	9.2e-06	0.0011	20.5	4.4	1	23	459	482	459	482	0.96
6	16	0.00053	0.063	15.0	1.4	1	23	487	510	487	510	0.98
7	16	6.3e-05	0.0075	17.9	1.2	1	23	521	543	521	543	0.95
8	16	0.015	1.8	10.4	3.2	1	23	548	571	548	571	0.96
9	16	3.4e-05	0.0041	18.7	0.8	1	23	577	599	577	599	0.96
10	16	0.00016	0.018	16.7	1.9	1	23	605	627	605	627	0.98
11	16	8e-07	9.4e-05	23.9	1.6	3	23	635	655	634	655	0.99
12	16	5.6e-07	6.6e-05	24.4	0.3	1	23	661	683	661	683	0.99
13	16	0.0029	0.34	12.7	0.2	1	23	688	711	688	711	0.98
14	16	0.0018	0.21	13.3	1.7	1	23	877	899	877	899	0.98
15	16	8.9e-07	0.00011	23.7	3.6	1	23	905	928	905	928	0.96
16	16	0.0055	0.65	11.8	2.7	1	23	933	957	933	957	0.89

Sequence Information

Coding Sequence: ATGCAGAGTGATGCTAATTTATTATCCATATTTAATGAGATATACCTGGGCAACAAATCTATTACTATTGCCGAAATTATTTCAGAGTGCACAAAGTACCCAGTAGCACATAACGATCAGCTACCCGCACAAATATGTAATACCTGCGTGGATGCGGCTCGGAGTGCCCATCAATTCAAGAAACAAACAGAGGATGCTTATTGCCATTTAAAGGCGTTGTTTGATATAACTTGGGTTCCCAAAGAGGAGAAAGGCAATAGTGTTATGAGGTTGTGCGCCCCCTCCATAGACAAGTATACACAAACTGAAAAAAGCAGTGTATTTCAATGTGAGATTTGCCCGAAAAAGTTTTTCGTTGAACGAGAGTTGAGGGAACATCGTGCCACCGTACACATTAATGATGGCAAAAAATGTCGTGTGTGTGGGGAAACGTTCAATCACTTGGGTCAACTGAAAGTTCATTTATCAACAGAACATCCAAGCGAAGGTATACGTTGTGAATTCAAATGTAATATATGTTCCAGAGAATTTACCCGCAAAGATCATTTGAAAAGACATTTAATACGGGTACATAAGGTCAAAGacgataaattaaatatCACTAAAGTATCACTTGATGAACCTGAAATTGAAAATCTAACAGTACTGCCGGCAAGTTTGAATAACTACAGTAGTCATTGGCCAGATTATCAAGAGGAAGATGACAATGaaccaataataaataatggTGAAAAAAATGAAACCATTGCCGCTACGAATCCATTCTCTAGTGAGGATGAAGGAGTAGATCATCACGATTTTAATGATATGGAAGACGAAGATGTTAAACAGTTTGTAGAAACTATAGCGCATCCAGAAATATCCATTAAAGTGGAAAATTCTGACAACAGTTACAACATTTCAAGTGATAAAAatgataaagttattaaatcctTTGATAGTTCCGCTGATGAAGCAAAATCCAATATATCCGAATTTAAACCCGAAAAATCTAGAGATATTTTAGAGATAAAAGAAAActgcaataaaacaattttctgtaATGTAAGCAATTCGATTAATGACAACCATAGCAATAACGATTCCAGTGAAGATGTCTCCGAAGATGATTACGAAGATGATGATGAGTATGAAGATGACGATGCTAATTTAGAAACCTCAGATAACGCAAACAAGTATTTAACGACAACGCcaataaaacaagagaaaactGATGCTCTGATAGAAAATGCTACAAGTTCGGCAGCAAAATCATCTAAACGACGTTATGATACTTCCAAAACCGAGGATAATAGGTGTAAGGAATGTAATCGGACATTTACACGCTACAATCATATGCTTCGACATATGCTTACACATAGCGATGAAAAACCTCATGTTTGCAATTTTTGTAGCAAAGGATTTTCACGTTCAGATCATTTGAAAAAACATATACAAAGTATACATTGTGAAAAGAACTACAAATGTGATCAGTGCGCAAGTGCTTACGGCCGTAAAGATCATTTGCAAAGACATATAGAAACGAGGCATAACAAGGATCCTTCGGTAACACAAAAGCAATTTGATTGTGACATGTGTGAGAAAAAGTTTACTACCAAAGCTTATTTGGCAAAACACAAACTGCTTCATACCGATCGTCTCTATGCCTGTAAACATTGTTCAGAAACTTTTCAAGAAAAGGAGCTAATGAAGGAACACCAAAagaacaaacatacacaaccaCGTAATTTTTTATGCAATATATGTGGAGACTCATTTCAAAGAAATGAATATCTTAAAATTCATATGCGTCGTCATACAGGTGAAAAACCATACAAATGTCGTTTTTGTGAAAAAGGTTTCCCGCGTAGCACAGATTTGAAAATGCACGAAAGATATCACATGGGACATAAACCAAATCTCTGCAATTTGTGTGGGAAAGGTTTCCATCGACCCTATAATCTTACAATACATATGCGTACGCACACTGGTGAAAAACCTTACAAATGCAATCAGTGTCCTCAAGCGTTTGCTCAAAGTAACGACTTAAAAGCACACATTAGGCGCCATACAGGAGAACGTTTTCGCTGTGATTTGTGCAGCGCTGCATTCTTACAACGTTATGGTTTAAACGCCCACTTAAGAACGGTACATGGTATAATAGTTACGTCATTTACTGGGCGCTTGCGTAAAACTGATCAACCTATTGATGGCAATGAATTACTTGATCAACAACCGCCACCGACGCCTCCGCCAGCGCAATTAGTTGCTGCTCAAGAGCAATCTCCAACGTCGCTGCCTTCACCTCCTTTAAATAGTAATGGTACACCTCCTCCTCTGTATTTAggccataattttttaaatcccaTACCAGTTATTGCTCCCGCCACACCAGCATCTCCCGTCGACATTTCATCAACAAAGGAACCAAATGATATTGCTGATGCATATAGCTATGATGATATTGATGAACCTAAAGCAGAACCGGAAACGATTATTCCAGGAGAAGATgatgaagaagaagaattttCAACACATAATGACTATGATCGCCAATACTTCTTTCAACcaaataaaattcacaaaaaagaaCAGACCGCAAGCATCaactttaataacaaatatCAACGAAATTCCGAAACGCATATGTTTCATTGTGTGGAATGTCTGCTGGAATTTAAATTACAACGAAATTTAGTCAGACACATGTTAACGCACACAGACGATAGACCGTTTACTTGCCACGTATGTCTGAAGTCTTTTAAACGTAAGGACAACTTACAAAAACATTTGCGAGATGTACATGCTGAAAAACAATTTGCTTGCGATAGATGCGAGAAAAAGTTTGCAACCTATCGGCAACTACACAGACATAATCAAACCAGTATtcacaaaaaagtttattaa
Protein Sequence: MQSDANLLSIFNEIYLGNKSITIAEIISECTKYPVAHNDQLPAQICNTCVDAARSAHQFKKQTEDAYCHLKALFDITWVPKEEKGNSVMRLCAPSIDKYTQTEKSSVFQCEICPKKFFVERELREHRATVHINDGKKCRVCGETFNHLGQLKVHLSTEHPSEGIRCEFKCNICSREFTRKDHLKRHLIRVHKVKDDKLNITKVSLDEPEIENLTVLPASLNNYSSHWPDYQEEDDNEPIINNGEKNETIAATNPFSSEDEGVDHHDFNDMEDEDVKQFVETIAHPEISIKVENSDNSYNISSDKNDKVIKSFDSSADEAKSNISEFKPEKSRDILEIKENCNKTIFCNVSNSINDNHSNNDSSEDVSEDDYEDDDEYEDDDANLETSDNANKYLTTTPIKQEKTDALIENATSSAAKSSKRRYDTSKTEDNRCKECNRTFTRYNHMLRHMLTHSDEKPHVCNFCSKGFSRSDHLKKHIQSIHCEKNYKCDQCASAYGRKDHLQRHIETRHNKDPSVTQKQFDCDMCEKKFTTKAYLAKHKLLHTDRLYACKHCSETFQEKELMKEHQKNKHTQPRNFLCNICGDSFQRNEYLKIHMRRHTGEKPYKCRFCEKGFPRSTDLKMHERYHMGHKPNLCNLCGKGFHRPYNLTIHMRTHTGEKPYKCNQCPQAFAQSNDLKAHIRRHTGERFRCDLCSAAFLQRYGLNAHLRTVHGIIVTSFTGRLRKTDQPIDGNELLDQQPPPTPPPAQLVAAQEQSPTSLPSPPLNSNGTPPPLYLGHNFLNPIPVIAPATPASPVDISSTKEPNDIADAYSYDDIDEPKAEPETIIPGEDDEEEEFSTHNDYDRQYFFQPNKIHKKEQTASINFNNKYQRNSETHMFHCVECLLEFKLQRNLVRHMLTHTDDRPFTCHVCLKSFKRKDNLQKHLRDVHAEKQFACDRCEKKFATYRQLHRHNQTSIHKKVY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00742112;
90% Identity: -
80% Identity: -