Ltes051244.1
Basic Information
- Insect
- Linnaemya tessellans
- Gene Symbol
- -
- Assembly
- GCA_951800035.1
- Location
- OX637536.1:94904778-94908733[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0016 0.3 13.4 0.3 1 23 124 147 124 147 0.92 2 13 5.6e-05 0.01 18.0 1.4 2 23 153 175 152 175 0.97 3 13 1.5e-06 0.00028 22.9 3.4 1 23 184 207 184 207 0.97 4 13 4.6e-05 0.0086 18.2 5.2 2 23 447 468 447 468 0.98 5 13 7.4e-06 0.0014 20.8 4.4 1 23 474 497 474 497 0.96 6 13 0.00015 0.027 16.7 2.1 1 23 502 525 502 525 0.98 7 13 5.1e-05 0.0094 18.1 1.2 1 23 536 558 536 558 0.95 8 13 0.0017 0.32 13.3 2.7 1 23 563 586 563 586 0.96 9 13 2.8e-05 0.0051 19.0 0.8 1 23 592 614 592 614 0.96 10 13 0.00012 0.023 16.9 1.9 1 23 620 642 620 642 0.98 11 13 6.4e-07 0.00012 24.1 1.6 3 23 650 670 649 670 0.99 12 13 4.5e-07 8.3e-05 24.6 0.3 1 23 676 698 676 698 0.99 13 13 0.0023 0.43 12.9 0.2 1 23 703 726 703 726 0.98
Sequence Information
- Coding Sequence
- atggaaaataatacaaattataataaaactacaATTTGCCGCATATGCATGCAGAATGATGATAATTTGTTATCCATATTTAATGAGGTATTCATCGACAAAAAATCTATTACTATTGCAGAAATTATTTCAGAATGCACAAAGTATCCAGTAGCACATAACGATCAGCTACCCGCTCAAATATGTAATACCTGCGTGGATGCGGCCCGGAACGCCCATCAATTTAAGAAACAAACAGAAGATGCTTATTGCCATTTAAAGGCGTTATATGATATAACTTGGGTTCCCAAAGAGGAGAAAGGCAGCAGTGTTGTGAGGTTGAGCGCCCCCTCCATAGACAAGTATACACAAACTGAAAAAAGCAGTGTATTTCAGTGTGAGATTTGCAcgaaaaagttttttgttgaaCGTGAGTTAAGGGAACATCGCGCCGCCGTCCACGTTTATGATGGTAAAAAATGTCGTGTGTGTGGCGAAACATTCAATCACTTGGGTCAATTGAAAGTTCATTTATCGACAGAACATCCTAGCGAAGGTATACGTTGTGATTTTAAATGTAATGTATGTTCGAGAGAATTTACCCGTAAAGACcatttaaaaagacatttaatACGGGTGCACAAGGTCAAAGACGATAACttaaatatCACTAAAGTATCACTAGACGAACCTGAAATTGAAAATCTCACAGTACTACCGTCATGTTTGAATAACTACAGCAGTCATTGGCCAGATTATCAAGAAGAAGATGACAACGAACCAGTTATAAATGATGGTCAAAAAAATGAAACTATTGCAGCTACGAATCCATTCTCTAGTGAAGATGAAGGTCTCGATCATCATGATTTTAATGATATGGAAGAGGAAGATGTTAAACAGTTTGTAGAAACTATAGCCCATCCAGAAATATCCATAAAGGTGGAAAATTCTGACAACATTTACATTTCAAGTGATAAAAATGATAAAGTTGTTAAATCCTTTGATAATTCCGCTGATGAAATAAAATCCAGTATATCGGAACTTACACCGGAAAAATCTAGAGATAATTTAGAGATAAAAGAAAACTGCagtaaaaaaattgaatgtAATGTAAGCAATTCAAATAATGATCAGCATAGCAATAATGATTCCAGTGACGATGTTTCTGACGACGATTACGAAGATGAGGATGAGTACGAAGATGACGATGATAATTTGGCAACCTCCGAAAAGTCAGACAAGTATTTAACGACAACGtcaataaaaaaagagaaaaccgattttctaactgaaaatcctaCAAGTTCAACTACAAAACCACCGAAACGACGTCATGAAACTTCCAAAACCGAGGATAATCGGTGTAAAGAATGTAATCGGACGTTCACGCGCTACAATCATATGCTGCGACATATGCTTACACATAGTGATGAAAAGCCTCatgtttgcaatttttgtaGCAAAGGATTTTCACGTTCagatcatttaaaaaaacatatacaaagTATACATTGTGAAAAGAACTACAAATGTGATCAGTGTTCAAGTGCTTATGGGCGTAAAGATCATTTGCAAAGACATATAGAAACGAGACATAACAAGGATCCTTCGGTTACGCAAAAGCAATTTGATTGTGATATGTGTGAGAAGAAGTTTACCACTAAAGCGTATTTGGCAAAACACAAACTGCTTCATACCGATCGCCTTTATGCCTGCAAGCATTGTCCAGAAACTTTTCAGGAAAAGGAGCAAATGAAGGAGCACCAGAAGAACAAACATACCCAACCAAGAAATTTCTTGTGCAATATATGTGGAGACTCATTTCAAAGAAATGAATATCTTAAAATTCATATGCGTCGTCATACAGGCGAAAAACCGTATAAATGTCGTTTTTGTGAAAAAGGTTTTCCGCGTAGCACAGATTTAAAAATGCACGAAAGATATCATATGGGACACAAACCAAATCTATGTAATTTATGCGGCAAAGGCTTTCATCGTCCCTATAACCTTACCATTCATATGCGTACGCACACTGGTGAAAAACCTTACAAATGCAATCAATGTCCTCAAGCGTTTGCTCAAAGCAATGACTTAAAAGCTCACATTAGACGCCATACAGGAGAACGTTTTCGTTGTGATTTATGCAGTGCAGCATTCTTACAGCGATATGGTTTGAACGCCCATTTAAGGACGGTACATGGTATAATAGTTACTTCATTTACGGGACGCTTGCGTAAAACTGATCAGCCTATCGATGGCAATGAGCTGCTTGATCAACAGCCACCTGCGGCCCCTCCACCACCTGCTGTTCAGGAGCAGTCTCCCACCTCGCTGCCTTCACCACCTTTAGATAGTAATGATACACCTCCTCCTTTGTATTTAGGTCACCATTTTATAAATCCCATACCAGTTGTTGCTCCCGCCACCACACCAACATCTCCCATTGACATTTCATCTACAAGTGGACCGTCATTGCCTCTTCCGCTACCGCATGCATCGTCGcagcaaatgtaa
- Protein Sequence
- MENNTNYNKTTICRICMQNDDNLLSIFNEVFIDKKSITIAEIISECTKYPVAHNDQLPAQICNTCVDAARNAHQFKKQTEDAYCHLKALYDITWVPKEEKGSSVVRLSAPSIDKYTQTEKSSVFQCEICTKKFFVERELREHRAAVHVYDGKKCRVCGETFNHLGQLKVHLSTEHPSEGIRCDFKCNVCSREFTRKDHLKRHLIRVHKVKDDNLNITKVSLDEPEIENLTVLPSCLNNYSSHWPDYQEEDDNEPVINDGQKNETIAATNPFSSEDEGLDHHDFNDMEEEDVKQFVETIAHPEISIKVENSDNIYISSDKNDKVVKSFDNSADEIKSSISELTPEKSRDNLEIKENCSKKIECNVSNSNNDQHSNNDSSDDVSDDDYEDEDEYEDDDDNLATSEKSDKYLTTTSIKKEKTDFLTENPTSSTTKPPKRRHETSKTEDNRCKECNRTFTRYNHMLRHMLTHSDEKPHVCNFCSKGFSRSDHLKKHIQSIHCEKNYKCDQCSSAYGRKDHLQRHIETRHNKDPSVTQKQFDCDMCEKKFTTKAYLAKHKLLHTDRLYACKHCPETFQEKEQMKEHQKNKHTQPRNFLCNICGDSFQRNEYLKIHMRRHTGEKPYKCRFCEKGFPRSTDLKMHERYHMGHKPNLCNLCGKGFHRPYNLTIHMRTHTGEKPYKCNQCPQAFAQSNDLKAHIRRHTGERFRCDLCSAAFLQRYGLNAHLRTVHGIIVTSFTGRLRKTDQPIDGNELLDQQPPAAPPPPAVQEQSPTSLPSPPLDSNDTPPPLYLGHHFINPIPVVAPATTPTSPIDISSTSGPSLPLPLPHASSQQM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00742112;
- 90% Identity
- -
- 80% Identity
- -