Tlur031299.1
Basic Information
- Insect
- Tachina lurida
- Gene Symbol
- -
- Assembly
- GCA_944452685.1
- Location
- CALYBZ010003679.1:262978-269736[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00017 0.017 16.5 0.3 1 23 124 147 124 147 0.97 2 13 7e-05 0.0069 17.7 1.0 2 23 153 175 152 175 0.97 3 13 4.9e-05 0.0048 18.2 4.6 1 23 184 207 184 207 0.95 4 13 6.1e-06 0.0006 21.0 5.0 2 23 448 469 448 469 0.98 5 13 6.2e-07 6e-05 24.2 3.6 1 23 475 498 475 498 0.96 6 13 0.00015 0.015 16.7 2.1 1 23 503 526 503 526 0.98 7 13 5.2e-05 0.0051 18.1 1.2 1 23 537 559 537 559 0.95 8 13 0.0012 0.12 13.8 3.1 1 23 564 587 564 587 0.97 9 13 2.8e-05 0.0028 18.9 0.8 1 23 593 615 593 615 0.96 10 13 0.00013 0.012 16.9 1.9 1 23 621 643 621 643 0.98 11 13 6.6e-07 6.4e-05 24.1 1.6 3 23 651 671 650 671 0.99 12 13 4.6e-07 4.5e-05 24.6 0.3 1 23 677 699 677 699 0.99 13 13 0.0024 0.23 12.9 0.2 1 23 704 727 704 727 0.98
Sequence Information
- Coding Sequence
- ATGGATAAAAACACAAGTTGCAATAAGAGTGCTATTTGCCGCATATGCATGCAAAATGATACAAATTTATTTTCCATATTTAATGAAGTTTTCTTCGCAAATAAAACCATTACTATAGCCGAAATAATTTCAGAGTGTACAAAATATCCAGTAGCACATAACGATCAGCTACCTGCACAAATATGCAACGTCTGCATGGAAGCGGCTCAAAACGCCCATCAGTTCAAAAAGCAAACAGAAGAGGCGTATTGCCAGCTAAAGGCGTTGTATGATATAACTTGGGTTCCGAAACAGGAGAAGGGTGGTACTACTATGAGAATGAGTGCCCTCACTACAGACAAGTATACACAAACTGAAAAAAGTAGTGTGTTTCAGTGTGAGATATGCCCGAAAAAGTTTTTCGTGGAACGTGAACTTAGAGAACATCGTGCCACAGTACACATTAATGATGGCAAAAAATGTCGAGTATGCGGCGAAACATTCATTCATTTGGGTCAATTAAAAGTCCATTTATCAACAGAACATCCCAGTGAGGGTATACGATGTGATTTTAAGTGCAATGTATGCTTAAGAGAGTTTACACGTAAAGACCATTTGAAAAGACATTTAATACACGTCCATAAGGTCAAAGACGAAAAATTAAATATCTCGAAAGTATCTCTTGATGAACCTGAAATTGAAAATCCCACCGTACTGTCAGCTAGTTTAAATAACTACAGCAGTCATTGGCCAGATTACCAAGAGGACGATGACAACGGTCCAAATGGTCGAAAGAATGAAACTATTGCCGCTACCAACCCATTCTCGAGTGAGGATGAGGGACTAGATCGACATGATTTCGATCACATGGATGAAAAAGACGTTAAACGATTTGTAGAAACCATAGCACATCCAGAGATATCCATTAAGGTGGAAAATTCTGAAGTCAGTTACAACATTTCAAGTGATAAAAATGAAAAATTTTTTAAATTCATCAAAAATTCAATTGACGAAGTGAAAGACCAATCGGCAATTAAACCAGAAAAATCTAACGATCAGTTAGATCCAAAGGAAGATTACGATGACGAAGATGACACGAACAGGAACAATTTAATTAAAGACCACCACAGCGATAACAATTCTAGTGGTGAAAATAGCACTGACAATGAATATGAAGATGAAGATGACGAGGACGAGAACGAGGACGATGACTATAATTTCGAGAGCACTATGAAGGCCAATAAATTTTCATCGACAAGCCGTATAAAACAAGAGCAAGTTAATGTACATATTGAAAACCCTACAAGTTCAACAGCAAAACCACCGAGACGGCGTCATGGTTCTTCCAAAACCGAAGATAACCGCTGCAAGGAATGCAATCGCACATTTACCCGCTACAATCATCTGCTGCGTCATATGCTCACACATAGTGATGAAAAGCCTCATGTTTGCAAATTTTGTGGCAAAGGATTTTCACGTTCAGATCATTTGCAAAAGCATATACAAAGTATACATTGCGAAAAGAACTACAAATGTGATCAGTGCTCCAGTGCTTATGGTCGAAAAGATCATTTGCAAAGGCACATAGAAACAAGGCATAACAAAGATCCTTCTGTACAAAGGCCTCAATTTGATTGTGATATGTGTGAGAAAAAGTTTACGACCAAAGCCTATTTGGCTAAACATAAACTGCTTCATACTGATCGCCTTTATGCTTGCAAACATTGTCCAGAAACGTTCCAAGAAAAGGAACAAATGAAAGAACACCAAAAGAAAAAACACACTCAGCCACGTAATTTCTTGtgcaatatttgcggagattcatttcaacgaaatgaataccttaaaattcacatgcgccgtcatactggtgagaaaccttacAAGTGTCGCTTTTGTGAAAAGGGTTTTCCGCGTAGTACAGATTTGAAAATGCACGAAAGGTATcacatgggacacaaaccaaatctatgcaatttatgcggcaaaggttttcatcgtccctacaatttgactatacatatgcgtacgcacactggtgaaaaaccttacaaatgcaatcaatgtcctcaagcgttcgctcaaagcaacgatttgaaagcccatataagacgccatacgggagaacgttttcgctgtgatttgtgcagcgctgcattcctgcaaCGTTATGGCTTAAATGCTCACTTAAGAACGATACATGGTATAATAGTTACTTCATTTACTGGACGCTTGCGTAAAACTGACCAATCCACTGACCATGTGGCTGAGCAAATTGATCAGCAACCAACAGCGGAAACGCCATTGGAACAAGCAGCTACTGCTGCTACCGAGCAGTCACAAATTGCGCTGCCTTCGCCCCCTTTAGATAGTAACGTTACACCGCCGCCTTTGTATTTAGGTCATCATTTTATAAATCCCATACCTGTTGTTGCCACCCTTGCACCAGCATCCCCTATTGACATTTCGTCCAGGAGCGCACCAACGTTGCCACTTCCGTTACCACATCCTCCGCCGTCGCAACAAATGTAA
- Protein Sequence
- MDKNTSCNKSAICRICMQNDTNLFSIFNEVFFANKTITIAEIISECTKYPVAHNDQLPAQICNVCMEAAQNAHQFKKQTEEAYCQLKALYDITWVPKQEKGGTTMRMSALTTDKYTQTEKSSVFQCEICPKKFFVERELREHRATVHINDGKKCRVCGETFIHLGQLKVHLSTEHPSEGIRCDFKCNVCLREFTRKDHLKRHLIHVHKVKDEKLNISKVSLDEPEIENPTVLSASLNNYSSHWPDYQEDDDNGPNGRKNETIAATNPFSSEDEGLDRHDFDHMDEKDVKRFVETIAHPEISIKVENSEVSYNISSDKNEKFFKFIKNSIDEVKDQSAIKPEKSNDQLDPKEDYDDEDDTNRNNLIKDHHSDNNSSGENSTDNEYEDEDDEDENEDDDYNFESTMKANKFSSTSRIKQEQVNVHIENPTSSTAKPPRRRHGSSKTEDNRCKECNRTFTRYNHLLRHMLTHSDEKPHVCKFCGKGFSRSDHLQKHIQSIHCEKNYKCDQCSSAYGRKDHLQRHIETRHNKDPSVQRPQFDCDMCEKKFTTKAYLAKHKLLHTDRLYACKHCPETFQEKEQMKEHQKKKHTQPRNFLCNICGDSFQRNEYLKIHMRRHTGEKPYKCRFCEKGFPRSTDLKMHERYHMGHKPNLCNLCGKGFHRPYNLTIHMRTHTGEKPYKCNQCPQAFAQSNDLKAHIRRHTGERFRCDLCSAAFLQRYGLNAHLRTIHGIIVTSFTGRLRKTDQSTDHVAEQIDQQPTAETPLEQAATAATEQSQIALPSPPLDSNVTPPPLYLGHHFINPIPVVATLAPASPIDISSRSAPTLPLPLPHPPPSQQM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00742112;
- 90% Identity
- iTF_01398747;
- 80% Identity
- -