Tfer028591.1
Basic Information
- Insect
- Tachina fera
- Gene Symbol
- -
- Assembly
- GCA_905220375.1
- Location
- LR999966.1:15938473-15942499[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0002 0.023 16.5 0.3 1 23 124 147 124 147 0.97 2 13 8.2e-05 0.0094 17.7 1.0 2 23 153 175 152 175 0.97 3 13 5.7e-05 0.0065 18.2 4.6 1 23 184 207 184 207 0.95 4 13 7.1e-06 0.00082 21.0 5.0 2 23 447 468 447 468 0.98 5 13 9.6e-06 0.0011 20.6 4.4 1 23 474 497 474 497 0.96 6 13 0.00017 0.02 16.7 2.1 1 23 502 525 502 525 0.98 7 13 6.1e-05 0.007 18.1 1.2 1 23 536 558 536 558 0.95 8 13 0.0055 0.63 12.0 4.1 1 23 563 586 563 586 0.97 9 13 3.3e-05 0.0038 18.9 0.8 1 23 592 614 592 614 0.96 10 13 0.00015 0.017 16.9 1.9 1 23 620 642 620 642 0.98 11 13 7.6e-07 8.8e-05 24.1 1.6 3 23 650 670 649 670 0.99 12 13 5.3e-07 6.1e-05 24.6 0.3 1 23 676 698 676 698 0.99 13 13 0.0028 0.32 12.9 0.2 1 23 703 726 703 726 0.98
Sequence Information
- Coding Sequence
- atggataaaaacaaaagttgcaATAAAAGTGCTATTTGCCGTATATGCATGCAGAAtgatgcaaatttattttccatatttaatgaagttttctttGCAAATAAAACCATTACTATAGCCGAAATAATTTCGGAGTGTACAAAGTATCCAGTAGCACATAACGATCAGCTACCCGCACAAATATGCAACGTCTGCATGGAAGCGGCTCAAAACGCCCATCAGTTCAAAATGCAAACAGAAGAGGCGTATTGCCACCTAAAGGCGTTGTATGATATAACTTGGCTTCCGAAACAGGAGAAGGGTGGTACTACTATGAGAATGAGTGCCCTCACTACAGACAAGTATACACAAACTGAAAAGAGTAGTGTGTTTCAGTGTGAGATATGCCCGAAAAAGTTTTTCGTGGAACGTGAACTTAGAGAACATCGTGCCACAGTACACATTAATGATGGCAAAAAATGTCGAGTATGTGGCGAAACATTCATTCATTTGGGTCAATTAAAAGTCCATTTATCTACAGAACATCCCAGTGAGGGTATACGATGTGATTTTAAGTGTAATGTATGCTTAAGAGAGTTTACACGTAAAGACCATTTGAAAAGACATTTAATACACGTCCATAAGGTCAAAGACGACAAATTAAATATCTCGAAAGTATCACTTGATGAACCTGAGATTGAAAATCCCACCGTACTGTCAGCTAGTTTAAATAACTACAGCAGCCATTGGCCAGATTACCAAGAGGACGATAACAACGAAACAAATGGTCGAAAGAATGAAACAATTGCCGCTACAAATCCATTCTCGAGCGAGGATGAGGGACTAGATCAACATGATTTCGATCACATGGATGAAAAAGATGTTAAACGATTTGTAGAAACCATAGCACATCCGGAGATATCCATTAAGGTGGAAAATTCTGAAGTCAATTACAACATTTCAAGTgataaaaatgaaaaagtttttaaatacatcaaaaattcaattgaCGAAGTGAAAGACCAATCGGCAATTCAACCAGAAAAATCTAAAGATCAGTTAGAGCGAAAGGATGATTACGATGACGAAGATGACACGAACAggaacaatttaattaaagacCACCACAGCGATAACAATTCGAGTGGTGAAAATAGCACTGACAATGAATATGAAGATGACGAGGACGAAAACGAGGACGATGACTATCATCATTTCGAGAGCACTATGAAGGCCAATAAATTTTCAACGGCAACCCGTATAAAACAAGAACTAATTGATGTACATATTGAAAATCCCACAAGTTCAACAGCAAAACCACCGAGACGACGTCATGGTTCTTCCAAAACCGAAGATAATCGCTGCAAAGAATGCAATCGCACATTTACCCGCTACAATCATCTGCTGCGTCATATGCTTACACATAGTGATGAAAAGCCGCATGTTTGCAAATTTTGTAGCAAAGGATTTTCACGTTCGGATCATTTGCAAAAGCATATACAAAGTATACATTGCGAAAAGAACTACAAATGTGATCAGTGCTCCAGTGCTTATGGCCGAAAAGATCATTTGCAAAGGCACATAGAAACAAGGCATAACAAAGATCCTTCTGTACAAAGGCCTCAATTTGATTGTGATATGTGTGAGAAAAAGTTTACGACCAAAGCCTATTTGGCAAAACATAAACTGCTCCATACTGATCGCCTTTATGCTTGCAAACATTGTTCAGAAACGTTTCAAGAAAAGGAGCAAATGAAGGAAcaccaaaagaaaaaacacaccCAGCCACGTAATTTCTTGTGCAATATTTGCGGAGATTCATTTCAACGGAATGAATATCTTAAAATTCACATGCGCCGTCATACCGGTGAGAAACCTTATAAGTGTCGCTTTTGTGAAAAGGGTTTTCCGCGTAGTACAGATTTGAAAATGCATGAAAGGTATCACATGGGACACAAACCAAATCTATGCAATTTATGCGGCAAAGGTTTTCATCGTCCCTACAATTTGACTATACATATGCGTACGCACACTGGTGAAAAACCTTACAAATGCAATCAATGTCCTCAAGCGTTCGCTCAAAGCAACGATTTGAAAGCACATATAAGACGCCATACGGGAGAACGTTTTCGCTGTGATTTGTGCAGTGCTGCATTCTTGCAACGTTATGGCTTAAATGCTCACTTAAGAACGATACATGGTATAATAGTTACTTCATTTACTGGACGTTTGCGTAAAACTGACCAGTCCACCGATCATGGTGCTGAGCAACTTGATCAGCAGCAAACAGGGGAGCCGCCACTGGCACAAGCAGCAACTGCTGCTACCGAGCAGTCACAAACTGTGCTGCCTTCGCCCCCTTTAGATAGTAACGTTACACCGCCGCCTTTGTATTTAGGTCATCATTTTATAAATCCCATACCTGTTGTTGCCACCCTTGCACCAGCATCGCCCATTGACATTTCGTCCAGGAGTGCATCAACGTTGCCCCTTCCCTTGCCACATGCTCCGCCGTCGCAACAAATGTAA
- Protein Sequence
- MDKNKSCNKSAICRICMQNDANLFSIFNEVFFANKTITIAEIISECTKYPVAHNDQLPAQICNVCMEAAQNAHQFKMQTEEAYCHLKALYDITWLPKQEKGGTTMRMSALTTDKYTQTEKSSVFQCEICPKKFFVERELREHRATVHINDGKKCRVCGETFIHLGQLKVHLSTEHPSEGIRCDFKCNVCLREFTRKDHLKRHLIHVHKVKDDKLNISKVSLDEPEIENPTVLSASLNNYSSHWPDYQEDDNNETNGRKNETIAATNPFSSEDEGLDQHDFDHMDEKDVKRFVETIAHPEISIKVENSEVNYNISSDKNEKVFKYIKNSIDEVKDQSAIQPEKSKDQLERKDDYDDEDDTNRNNLIKDHHSDNNSSGENSTDNEYEDDEDENEDDDYHHFESTMKANKFSTATRIKQELIDVHIENPTSSTAKPPRRRHGSSKTEDNRCKECNRTFTRYNHLLRHMLTHSDEKPHVCKFCSKGFSRSDHLQKHIQSIHCEKNYKCDQCSSAYGRKDHLQRHIETRHNKDPSVQRPQFDCDMCEKKFTTKAYLAKHKLLHTDRLYACKHCSETFQEKEQMKEHQKKKHTQPRNFLCNICGDSFQRNEYLKIHMRRHTGEKPYKCRFCEKGFPRSTDLKMHERYHMGHKPNLCNLCGKGFHRPYNLTIHMRTHTGEKPYKCNQCPQAFAQSNDLKAHIRRHTGERFRCDLCSAAFLQRYGLNAHLRTIHGIIVTSFTGRLRKTDQSTDHGAEQLDQQQTGEPPLAQAATAATEQSQTVLPSPPLDSNVTPPPLYLGHHFINPIPVVATLAPASPIDISSRSASTLPLPLPHAPPSQQM*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00742112;
- 90% Identity
- iTF_01398747;
- 80% Identity
- -