Fase021042.1
Basic Information
- Insect
- Formica aserva
- Gene Symbol
- -
- Assembly
- GCA_037039905.1
- Location
- JAXRKO010000019.1:232992-237619[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.023 4.6 9.3 3.1 1 23 417 439 417 439 0.97 2 19 0.019 3.8 9.6 0.5 2 23 476 497 475 497 0.96 3 19 8.1e-05 0.016 17.1 1.2 1 23 568 590 568 590 0.97 4 19 0.053 11 8.2 2.8 1 23 593 615 593 615 0.98 5 19 4e-06 0.0008 21.2 1.3 2 23 668 690 667 690 0.96 6 19 8.3e-05 0.016 17.0 1.3 1 23 696 718 696 718 0.95 7 19 0.00076 0.15 14.0 0.7 1 20 724 743 724 748 0.94 8 19 6.4e-05 0.013 17.4 0.9 2 23 821 842 820 842 0.95 9 19 0.00027 0.054 15.4 4.0 1 23 892 914 892 914 0.96 10 19 0.00034 0.067 15.1 0.7 1 20 919 938 919 940 0.94 11 19 0.057 11 8.1 0.3 2 23 951 972 951 972 0.97 12 19 3.4e-05 0.0069 18.2 0.6 2 23 1011 1032 1010 1032 0.97 13 19 3.1e-05 0.0062 18.4 1.6 1 23 1037 1059 1037 1059 0.95 14 19 0.00018 0.035 16.0 2.8 1 23 1065 1087 1065 1087 0.98 15 19 5.5e-06 0.0011 20.7 0.4 1 23 1103 1125 1103 1125 0.95 16 19 6.5e-07 0.00013 23.7 0.8 1 23 1131 1153 1131 1153 0.99 17 19 4.9e-05 0.0098 17.8 0.2 1 23 1159 1181 1159 1181 0.97 18 19 0.029 5.8 9.0 6.9 1 23 1187 1209 1187 1209 0.96 19 19 0.0062 1.2 11.2 0.6 1 20 1215 1234 1215 1236 0.90
Sequence Information
- Coding Sequence
- ATGGACGCCGTAGAAATAAATACGTCGGGTCCGCCGCAGAGTGAGGACGCGATCGCGTCCGCGGTGAAAATATGCCGCGTGTGCCTGCTCGACAACCTGATGATGCGAGACCTCTTCCTCGAGAGCGAGGTCGCGTCCCTCTCAATGAAAGCGATGAGCTTCACCAACGTTAAGATGTTACCAGGCGACGGTCTACCGGCACAGGTGTGCTGTGTTTGTGCCGACAAATTAGAGTCGGCGTATGAATTTAAGTTACAAGTGGAGCAGGCTGACAGTGTCCTCAGAAATAGGTTTATCGGAGGGATAATAAAGGAGGAATTGTTTCTTAATGAGGTCGAGATACACTTAGATGACGAAAGGAATGATGATATGGAGGACATGAATGTCAGTACCGATTATGAACCTACTGTCACAGTTCTACCAGAAGAGACAGATgttgataaaaactttttgaaagagcaattaatgattttagaaaatgaaaaattgacGAATGTAGAAGGAATGCAACAAAATGCAGAACAGGATAATTCACAGGAGATTACACAACAAATTAGTCAAAACGTTGCAGAAGAGTCGCAGCAAGAATTAGTTGATACAGAAGATAATGATATACCAAGTACTATCAAAGAATCTAGGAATCAAAAGTCTTGTATGAACGAAAATATCACTTCGAGTTATATAGAGGCAATTCCAACAGAGGAACATGATTACATTATGCAGCAACAATGTGTGTTGCCCACTGAACAATTTCCTTTGCAGGAAAGGATACATGCGGATACACAAGTTGAACAAAGTATAGTGGAATGCCAACAAACATTATCTGAATTAGATCAAGAGAATCAAGTTGAACAAATTCAAGAAAATCAAGCTGAACAAATTCAAGGGAATCAAGCTGAACAAATTCAAGAGAATCGAGTTGAACAGATTCAAGAGGATCAAGCTGAACAGATTCAAGAGAATCAAGCGGAGCAAATTCAAGAGGCTCAAGAGGAACAAATTCAAGAGAATCAATCTGAGCaaaatcaaagtgataaaaagaaatcttttaaCGAAGAAATGTCTACGACTGATAACGAGCCAGCGGTGGGACAAGATTCATCTCAAAACGAAACTAGAAGAAGTAAACGTAGATTAGCTCGTCGGACGTTCGCCGAACGGGATTCCGACGAAGAGAACtatttcgaaaatttaaatctcagttctcgattgaaaaaagCACAGGCGGATAAGGCGGAGAAGATTTTCTTTATGTGTTATTTGTGTGACAAACAGTTCCTGTCAAAGAGCGTTCTGAAGGAGCACATGCATTCTCATGAAGAAGTGAGGAAAGCGCTCTCTCTAAAGAAAACGCCGGAGAAGCCGCAGAAGATACAGACCAACATCTCCACCACGAAGACTCCGCCATCTGGAAAAAAAGCCAACAAGTGCCCTTATTGCGGTAAAGAGTATTTGTACATAATCTCGTTTACTAAGCATATTAAACAGCATGAGCGGGAGCGAGAGGAGGCGAAAGAAGATCCTATGCCGCTCGAAATTTCGTTCCACGAAGATGAGCATAGTCTAGACTTTGATGGTAACAATTCGGACAGAGAATATAGAAAACGAACGAGGAGAGGAAGTATAGCTGACGGAAACGATGACGCCACGACGAGCGACAACGACcaggataaaaaaagaaaacggaATCGTGTCGAAGAATTCGCATGCGACAAATGTCCAGAGAAATTCGATACGAAACGAAGCTTGCAAAAGCACTCGCTCACGCACGTTAGCTTTAAGTGCAACGTGTGTCACGATGAGTACGACACTCTGGTACAACTAAGGAATCACCGAACGAAACATGTAGTCGAAGGCGTACTTACAGAGCAGGATTTAGAAGAAGACATGAAGCAGATGATGGCCAAGAGCGTCGAGAACTATGATGACGAAGACAACAAAAACgacgaggaggaggaggaataTAATGATGGCGAATCCGCCGAACATGCGAAGGAACTCAAGTGTCAAAAGTGTCCAATGACGTTCTCGCGCAAGAAGTTGCTGTCCAGACACATGGAGACGGCGCATTCTGGAGTTAGCAGCTACGATTGCAAGATATGTCGTCAACAGTTCACGCGGAAGGATCTTCTGCGCAGACATGCCGAGCAGCACGCGCGAATAAAGACCTACAAGTGTACTCAATGCAACAAAACTTTCGGTAACGAGCTCACTCTGAGAAATCATCTGGTCGCCACGAATCACAAGACGTTTATACATGGACAAGAATACGATCCGAACAAGCGTATAAAGCGCGTGGCTGCGAAAGCAGCGCAAAAGATCATTGATAAGATCAAAACGGAGGACGGTTTGGAGGATTACGACGACGATAACGACAATGTCGATTACGACGCCAAATTGGACGGGCATTATTATCGCCGTAAGCGCGACGCTACACCAAAGAATTATAAGAAGGAATTAGAATGCGCGACGTGTAATAAGAGGTACAGTTCGAAGCAAGCGTTGACGAAGCACATGGAACAGCATGTGAAAGACGAAAAAGCGGCGGAGAAGTTGAAAAAGGCCGCTTCAGATAAGAAGGAGACGCAAAAAACGAATAATACGACAGGCGAtaacgacgatgacgacgacgactcGGACTTCGAGAGCGGTCTCGATTGGCCGATGGACAGTCACGAATGCGGCACGTGCAAGAAACGCTACAGCACGAAGAAGTCGCTGCTGCGACACCAGCTGCTGCACGAGGAACCGAACTTTGAGTGCGACATTTGCAACGTCAAGTTCTATCGTAAGGACAAGCTAAAGGCGCACTATGACAAGTGCTCTGAGAAAAATCCCGATCAGGTGAGGAAGTGCAATATATGTGGCGACAGTTTCGAGAACAATGAGATCCTGCGGGAACACCGGGCCAAGCACGTCACTGAAGGTATCTTAACGGAAGAAGATTTGAGAGATATCGAGCCGAAACCCGAGGAGAAGAAACCGGGCGAGAAGATCGGCCGGAAGAGGAGAACCGATATCGTAGGCCTCGAGTGTACCGAGTGCAACAAACAATACACCTCCAGGAAAGGTCTTTTGCGGCACATTCAGGTACACGAGGGCAAGAAATACTTGTGCGACATATGCCCGAAGAAGTTCTATCGACGGGAACATCTTAAGATCCACGTGGCCAAGCACAATATGATAAAACCGTACAAATGCACCCGCTGCACCAAGCGCTTCATCAAGGAGGAGCAGCTCAATAATCATCTGTCCAAGCACGATCGTACTTTCAAGAAGAATAAGGAAACCGATAGTTCGAAGAGATTTCTCTGTGAGATCTGCAGCAAGAGTTTCACACAATCGACGACGCTGATAGCTCATCTGCGCGCGCACAACGGTATCAAACCGTACGTATGCCAGGTCTGCTCCAGGCCGTTCACCACCAACGCCTACCTGAAGATGCATATGCGCACGCATACGCAAGAACGGCCATATATCTGTCAATATTGCTCGCGAGCGTTCGCGCGAGCCGACACCTTGGCGAATCATCTAACGTCTCACACCGGCGAGGCCAAGTATCACTGCAAATGCTGTCCGAAAAACTTCCGGCGATTGAAGTCACTGAAGGAGCACATGTTTATTCACACGGGTCAGCGACCTTACGAGTGTCCGACTTGCGACCGCAAGTTCAACAACAACGGCAGCCGCTACGCGCACAGTAAGCGTTGTAAACAGAATCTCTTGCAGAATCAGAACCGCGCGCAGCAGATGATGCAGCAGCAGGTGCAGCCACAGCCGCAGCAACAGCAACAACAATCTCAAGTGCAGATACAAGTACAGCAGCAGTCACAGGTCAGGATGCATCAGACCACGCTCGGCCAGGCGCAGATCGTCAAAGCACAGAACATCAAGACGATCGCTATAGCGAGGCAGGCGGAACCGACCACGGTGGCTACGACGCAGCAAGTGATGCAACAGGAGATACTCATGCCGCTCATTTTGCCGCTTACTGTCACCCTCGCCGACGTAGGCGAGGAGGTGATATTACCTGAGGGTACAAAAATATTCACCACTTCTTAA
- Protein Sequence
- MDAVEINTSGPPQSEDAIASAVKICRVCLLDNLMMRDLFLESEVASLSMKAMSFTNVKMLPGDGLPAQVCCVCADKLESAYEFKLQVEQADSVLRNRFIGGIIKEELFLNEVEIHLDDERNDDMEDMNVSTDYEPTVTVLPEETDVDKNFLKEQLMILENEKLTNVEGMQQNAEQDNSQEITQQISQNVAEESQQELVDTEDNDIPSTIKESRNQKSCMNENITSSYIEAIPTEEHDYIMQQQCVLPTEQFPLQERIHADTQVEQSIVECQQTLSELDQENQVEQIQENQAEQIQGNQAEQIQENRVEQIQEDQAEQIQENQAEQIQEAQEEQIQENQSEQNQSDKKKSFNEEMSTTDNEPAVGQDSSQNETRRSKRRLARRTFAERDSDEENYFENLNLSSRLKKAQADKAEKIFFMCYLCDKQFLSKSVLKEHMHSHEEVRKALSLKKTPEKPQKIQTNISTTKTPPSGKKANKCPYCGKEYLYIISFTKHIKQHEREREEAKEDPMPLEISFHEDEHSLDFDGNNSDREYRKRTRRGSIADGNDDATTSDNDQDKKRKRNRVEEFACDKCPEKFDTKRSLQKHSLTHVSFKCNVCHDEYDTLVQLRNHRTKHVVEGVLTEQDLEEDMKQMMAKSVENYDDEDNKNDEEEEEYNDGESAEHAKELKCQKCPMTFSRKKLLSRHMETAHSGVSSYDCKICRQQFTRKDLLRRHAEQHARIKTYKCTQCNKTFGNELTLRNHLVATNHKTFIHGQEYDPNKRIKRVAAKAAQKIIDKIKTEDGLEDYDDDNDNVDYDAKLDGHYYRRKRDATPKNYKKELECATCNKRYSSKQALTKHMEQHVKDEKAAEKLKKAASDKKETQKTNNTTGDNDDDDDDSDFESGLDWPMDSHECGTCKKRYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDSFENNEILREHRAKHVTEGILTEEDLRDIEPKPEEKKPGEKIGRKRRTDIVGLECTECNKQYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCTRCTKRFIKEEQLNNHLSKHDRTFKKNKETDSSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCQVCSRPFTTNAYLKMHMRTHTQERPYICQYCSRAFARADTLANHLTSHTGEAKYHCKCCPKNFRRLKSLKEHMFIHTGQRPYECPTCDRKFNNNGSRYAHSKRCKQNLLQNQNRAQQMMQQQVQPQPQQQQQQSQVQIQVQQQSQVRMHQTTLGQAQIVKAQNIKTIAIARQAEPTTVATTQQVMQQEILMPLILPLTVTLADVGEEVILPEGTKIFTTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01245372;
- 90% Identity
- iTF_00730225; iTF_00730940; iTF_00280103; iTF_00265175; iTF_00264461; iTF_00280699; iTF_01245372; iTF_00109981; iTF_00869054; iTF_00867617;
- 80% Identity
- -