Chis006855.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cataglyphis hispanica
Gene Symbol
-
Assembly
GCA_004195275.1
Location
SGAY01001370.1:12511-17511[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 0.021 2.7 9.4 3.1 1 23 408 430 408 430 0.97
2 19 0.017 2.2 9.6 0.5 2 23 467 488 466 488 0.96
3 19 7.3e-05 0.0094 17.1 1.2 1 23 559 581 559 581 0.97
4 19 0.036 4.6 8.6 3.2 1 23 584 606 584 606 0.98
5 19 3.6e-06 0.00047 21.2 1.3 2 23 660 682 659 682 0.96
6 19 3.2 4e+02 2.5 0.6 5 23 690 707 689 707 0.89
7 19 0.00069 0.088 14.0 0.7 1 20 713 732 713 737 0.94
8 19 5.8e-05 0.0075 17.4 0.9 2 23 810 831 809 831 0.95
9 19 0.00023 0.029 15.5 4.8 1 23 879 901 879 901 0.97
10 19 0.00031 0.039 15.1 0.7 1 20 906 925 906 927 0.94
11 19 0.19 25 6.3 0.3 2 23 938 959 938 959 0.97
12 19 3.1e-05 0.004 18.3 0.6 2 23 998 1019 997 1019 0.97
13 19 2.8e-05 0.0036 18.4 1.6 1 23 1024 1046 1024 1046 0.95
14 19 0.00016 0.02 16.0 2.8 1 23 1052 1074 1052 1074 0.98
15 19 5e-06 0.00064 20.8 0.4 1 23 1090 1112 1090 1112 0.95
16 19 5.9e-07 7.6e-05 23.7 0.8 1 23 1118 1140 1118 1140 0.99
17 19 4.4e-05 0.0057 17.8 0.2 1 23 1146 1168 1146 1168 0.97
18 19 0.026 3.4 9.1 6.9 1 23 1174 1196 1174 1196 0.96
19 19 0.0056 0.72 11.2 0.6 1 20 1202 1221 1202 1223 0.90

Sequence Information

Coding Sequence
ATGGACGCCGTAGAAATAAATACGTTGGGTCCGCCGCAGAGTGAGGACGCGATCGCGTCCGCGGTGAAAATATGCCGCGTGTGTCTGCTCGACAACCTGATGATGCGCGACCTCTTCCTCGAGAGCGAGGTCGCGTCTCTCTCAATGAAAGCGATGAGCTTCACCAACGTTAAGatGTTGCCAGGCGATGGATTACCGGCACAAGTGTGCTGTGTTTGCGCTGATAAACTAGAGTCGGCATATGAATTTAAGTTACAAGTGGAGCAGGCTGACAGTGTCCTCAGAAATAGGTTTGTTGGAGGTATAATAAAGGAGGAATTATTTCTTAACGAGGTCGAGATACACTTAGATGATGAAAGGAATGACGATATAGCGGAAATGAATGTCAATACCGATTATGAATCTACTGTCACAGTTCTACCAGAAGAAACAGATGctgataagaattttttgaaagaacaaTTAATGAtcttagaaaatgaaaaattgacaaatgtaGAAGAAATGCAACAAGATCCAGAACAGGATAATTTACAGAAGATTACACAACAAATTAGTCAAAATGTTGAAGAAGAATCGCAGCAAGAATTAGTTGATACAGAAGATAATGATATGTCAAGTGATATCAAAGAATCTAagaatcaaaaatttcatatgaatgaaaatatcaCTTCGAATTATATAGAAGCAATTCCAACAGAAGaacatgattatattatgcagCAACAATGTATGTTGCCCACTGAACATTTTCCTTTGCAGGAAAGGATACAGGCGGAAGCACAAGTTGAACAAAGTATAGTGGAATGCCAAACATTATCTGAATTAGATCAAGAGAATcaagttgaaaaaattcaagaaaatcaTGCTGAACAAATTCAAGAGAATCGAATTGAACAAATTCAAGAGAATCGAGTTGAACAGATTCAAGAAAATCAAGCGGAGCAAATTCAAGAGACACAAACAGAGCAAATTCAAGAAAATCAATCTGAGCAAAATCAaagtgataaaaagaaatcttttaacGAAGAAATGTCTACGACTGACAACGAGCCGACGATGGGACAAGATTCATCTCAAAACGAAACTAGAAGAAGTAAACGTAGATTAGCTCGTCGGACATTCGCCGAACGAGATTCCGACGAAGAGAactatttcgaaaatttaaatctcagttctcgattaaaaaaagcacAGGCAGATAAGGCagagaagattttttttatgtgttattTGTGTGACAAACAATTCCTGTCAAAGAGTGTTCTGAAGGAGCACATGCATTCTCATGAAGAAGTGAGGAAAGCGCTTTCTCTAAAGAAAACGCCGGAGAAGCCGCAAAAGATACAGACCAACATTTCCATCACGAAGACTCCACCATCTGGAAAAAAAGCCAACAAGTGCCCTTATTGTGGTAAAGAGTATCTGTACATAATCTCATTTACTAAGCACATTAAACAGCACGAGCGGGAGCGAGAGGAGGCGAAAGAAGACCCTATGCCGCTCGAAATTTCGTTCCACGAAGATGAGCATAGTCTAGACTTTGATGGTAACAATTCGGACAgagaatatagaaaaagaacgAGGAGAGAAAGTACAGCTGACAGAAACGACGACGCCACAATGAGTGACCACGATcaggataaaaaaagaaagcagaaTCGCGTCGAAGAATTCGCATGCGACAAATGTCCGGAGAAATTCGATACGAAACGAAGCTTACAAAAGCACTCTCTCACGCATGTGAGCTTTAAGTGCAACGTCTGTCACGATGAGTACAACACTCTGGTACAATTAAGGAATCATCGAACGAAACATGTAGTCGAAGGTGTACTCACAGAGCAGGATTTAGAAGAAGACATGAAGCAGATGATGGCCAAGAATGTCGGCAACTACGAtgacgaagaaaataaaaatgaagaggaggaagaggaataTAATGACGGCGAATCCGCCGAACATGCGAAGGAGTCACTCAAGTGTCAGAAGTGTCCAATGACATTCTCGCGCAAGAAATTGCTGTCCAGACATATGGAGACGGCTCATTCTGGCAGTTACGATTATGGCAAGTGTCGTCAACAGTTCACGCGGAAAGATCTGCGCAGACATGCTGAACAACACGCGCGAATAAAGACCTACAAGTGCACTCAGTGCAACAAAACTTTCGGTAACGAACTCACTCTGAGAAATCATCTAGTCGCCACGAATCACAAGACGTTTATACATGGACAAGAATACGATCCGAACAAGCGAATAAAGCGCGTAGCCGCGAAAGCAGCGCAGAAAATCATTGACAAGATCAAAACGGAGGATGGTTTGGAGGATTACGACGACGATAATGACAATGTCGATTATGACGCCAAATTGGACGGGCATTATTACCGCCGTAAGCGCGACGCTACACCAAAGAATTATAAGAAGGAATTAGAGTGCGCGACGTGTAATAAGAGATACAGTTCGAAGCAAGCATTGACGAAGCACATGGAACAACATGTGAAAGACGAAAAAGCGgcggaaaaattgaaaaaggcCGTTTCAGATAAGAAGGAGATGCAGAAAACGAATAATGCGACAggcgatgatgatgacgacgacTCGGACTTCGAGAGCGGTCTCGATTGGCCGATGGACAGTCACGAATGTAGTACGTGCAAGAAACGCTACAGCACAAAAAAGTCGCTACTGCGGCACCAGCTGCTGCACGAGGAACCTAACTTTGAGTGCGATATTTGCAACGTCAAGTTCTATCGTAAGGACAAGTTAAAGGCGCACTATGACAAGTGCTCTGAGAAGAATCCCGATCAGGTGAGGAAGTGCAATATATGTGGCGACAATTTCGAGAACAATGAGATCCTGCGGGAACATCGGGCCAAACACGTCACTGAGGGTATCTTAACAGAAGAAGATTTGAGGGACATTGAGCCGAAACCTGAGGAGAAGAAACCAGGCGAGAAGATCGGCCGGAAGAGGAGAACTGATATCGTTGGCCTCGAATGTACCGAGTGCAACAAACAGTACACTTCCAGGAAGGGTCTTTTACGGCACATTCAAGTACACGAGGGTAAGAAATACTTGTGCGACATATGTCCGAAAAAATTCTATCGACGAGAACATCTCAAGATCCATGTGGCCAAACACAATATGATAAAACCATATAAATGCACTCGCTGCACCAAGCGCTTCATCAAGGAGGAGCAGCTCAACAATCATCTGTCCAAGCACGATCGTACTTTCAAGAAGAACAAGGAAACCGACAGCTCGAAGAGATTCCTCTGTGAGATCTGCAGCAAGAGCTTCACACAATCGACGACACTGATAGCTCATTTGCGCGCGCACAATGGCATCAAACCGTATGTATGCCAGGTCTGTTCCAGGCCGTTCACCACCAACGCCTATCTGAAAATGCATATGCGCACTCACACGCAAGAACGGCCATATATCTGTCAATACTGCTCGCGAGCGTTCGCGCGGGCTGACACCTTGGCGAATCATCTAACGTCTCACACCGGCGAGGCCAAGTATCACTGCAAATGCTGTCCGAAGAACTTCCGGCGGTTGAAGTCACTGAAGGAGCACATGTTTATTCACACGGGGCAGCGACCTTACGAGTGTCCGACTTGCGACCGCAAGTTTAACAACAACGGCAGCCGCTACGCGCACAGCAAGCGCTGTAAACAGAACCTCTTGCAGAATCAGAACCGCGCGCAGCAGATGATGCAGCAGCAGGTGCAAGCACAGCcgcagcaacagcaacagcaacaacaaccTCAAGTGCAGATACAAGTACAACAGCAGTCACAAGTCAGGATGCATCAAACTACACTCGGCCAGGCGCAGATTGTCAAAGCGCAGAACATCAAGACGATCGCTATAGCGAGGCAGGCGGAACCGACCACGGTGGCCACGACGCAGCAAGTGATGCAACAGGAAATACTGATGCCGCTCATTTTGCCGCTTACTGTCACTCTCGCCGACGTAGGGGAAGAGGTGATATTACCTGAGGGTACAAAGATATTCACCACTTCTTAA
Protein Sequence
MDAVEINTLGPPQSEDAIASAVKICRVCLLDNLMMRDLFLESEVASLSMKAMSFTNVKMLPGDGLPAQVCCVCADKLESAYEFKLQVEQADSVLRNRFVGGIIKEELFLNEVEIHLDDERNDDIAEMNVNTDYESTVTVLPEETDADKNFLKEQLMILENEKLTNVEEMQQDPEQDNLQKITQQISQNVEEESQQELVDTEDNDMSSDIKESKNQKFHMNENITSNYIEAIPTEEHDYIMQQQCMLPTEHFPLQERIQAEAQVEQSIVECQTLSELDQENQVEKIQENHAEQIQENRIEQIQENRVEQIQENQAEQIQETQTEQIQENQSEQNQSDKKKSFNEEMSTTDNEPTMGQDSSQNETRRSKRRLARRTFAERDSDEENYFENLNLSSRLKKAQADKAEKIFFMCYLCDKQFLSKSVLKEHMHSHEEVRKALSLKKTPEKPQKIQTNISITKTPPSGKKANKCPYCGKEYLYIISFTKHIKQHEREREEAKEDPMPLEISFHEDEHSLDFDGNNSDREYRKRTRRESTADRNDDATMSDHDQDKKRKQNRVEEFACDKCPEKFDTKRSLQKHSLTHVSFKCNVCHDEYNTLVQLRNHRTKHVVEGVLTEQDLEEDMKQMMAKNVGNYDDEENKNEEEEEEYNDGESAEHAKESLKCQKCPMTFSRKKLLSRHMETAHSGSYDYGKCRQQFTRKDLRRHAEQHARIKTYKCTQCNKTFGNELTLRNHLVATNHKTFIHGQEYDPNKRIKRVAAKAAQKIIDKIKTEDGLEDYDDDNDNVDYDAKLDGHYYRRKRDATPKNYKKELECATCNKRYSSKQALTKHMEQHVKDEKAAEKLKKAVSDKKEMQKTNNATGDDDDDDSDFESGLDWPMDSHECSTCKKRYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDNFENNEILREHRAKHVTEGILTEEDLRDIEPKPEEKKPGEKIGRKRRTDIVGLECTECNKQYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCTRCTKRFIKEEQLNNHLSKHDRTFKKNKETDSSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCQVCSRPFTTNAYLKMHMRTHTQERPYICQYCSRAFARADTLANHLTSHTGEAKYHCKCCPKNFRRLKSLKEHMFIHTGQRPYECPTCDRKFNNNGSRYAHSKRCKQNLLQNQNRAQQMMQQQVQAQPQQQQQQQQPQVQIQVQQQSQVRMHQTTLGQAQIVKAQNIKTIAIARQAEPTTVATTQQVMQQEILMPLILPLTVTLADVGEEVILPEGTKIFTTS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01245372;
90% Identity
iTF_00729509;
80% Identity
-