Agra019191.1
Basic Information
- Insect
- Anoplolepis gracilipes
- Gene Symbol
- -
- Assembly
- GCA_031304115.1
- Location
- JAPWJP010001515.1:1622381-1627824[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.022 4 9.4 3.1 1 23 401 423 401 423 0.97 2 19 0.0096 1.7 10.5 0.8 2 23 460 481 459 481 0.97 3 19 0.00026 0.047 15.4 1.9 1 23 553 575 553 575 0.97 4 19 0.0013 0.24 13.2 2.7 1 23 578 600 578 600 0.98 5 19 4.9e-06 0.00088 20.9 1.6 2 23 651 673 650 673 0.96 6 19 0.00017 0.03 16.0 0.7 1 23 679 701 679 701 0.95 7 19 0.001 0.18 13.6 0.8 1 20 707 726 707 731 0.94 8 19 6e-05 0.011 17.4 0.9 2 23 804 825 803 825 0.95 9 19 0.00022 0.041 15.6 5.0 1 23 875 897 875 897 0.97 10 19 0.00032 0.058 15.1 0.7 1 20 902 921 902 923 0.94 11 19 0.053 9.7 8.1 0.3 2 23 934 955 934 955 0.97 12 19 3.2e-05 0.0059 18.3 0.6 2 23 994 1015 993 1015 0.97 13 19 3e-05 0.0054 18.4 1.6 1 23 1020 1042 1020 1042 0.95 14 19 0.00017 0.03 16.0 2.8 1 23 1048 1070 1048 1070 0.98 15 19 9e-06 0.0016 20.0 0.4 1 23 1086 1108 1086 1108 0.95 16 19 4.2e-07 7.7e-05 24.2 0.6 1 23 1114 1136 1114 1136 0.99 17 19 4.6e-05 0.0084 17.8 0.2 1 23 1142 1164 1142 1164 0.97 18 19 0.027 4.9 9.1 6.9 1 23 1170 1192 1170 1192 0.96 19 19 0.0058 1.1 11.2 0.6 1 20 1198 1217 1198 1219 0.90
Sequence Information
- Coding Sequence
- ATGGACGCCGTGGAAATAAATACGTCGGATCCGCCGCAAAGTGAGGACGCGATCGCGTCCGCGGTGAAGATATGCCGCGTGTGCCTGCTCGACAACCTGATGATGCGCGACCTCTTCCACGGGAGCGAGGTCGCGTCCCTGTCAATGAAAGCTATGAGCTTCACCAACGTTAAGATGTTACCAGGCGATGGTCTACCATCACAAGTATGCTGTGTCTGCGCAGAAAAACTGGAATCGGCGTACGAATTTAAGTTACAAGTGGAACAGGCTGACAGTGTCCTCAGAGACAAATTTGTCGGAGGAATAATAAAAGAGGAATTGTTTCTTAACGAAGTTGAGATACACTTGGACGATGAAACGAATAACGATATAGAAGAGATGAATGTCAATACTGACTATGAATCTACTGTCACAGTTTTACCAGAAGAATCAGACGCTGATAAAAACTTCTTGAAAGAGCAATTAATGATGTTAGAAGatgaaaaattgacaaatacaGAAGAAATCCAACAAGATCCAGAACAAGATAATTCACAGGAGATTACACAAGAAGTTAGTCACAGCATCTCAGAAGAGTCACAGCAGGAATTAATTGATAcagaagataatatgtcaTGTACTGTCAAAGAATCTAGGAATCAGAAACTTTGTATAAACGAAAATATCACTCCGAGTTACATAGAAGCAATTCCAACGGAGGAACATGATTACATTATGCAGCAACAGTGTGTATTACCTACCGAACAATTTTCTTTGCAAGAAAGGATACAGCAGGACACACAAGTTGAGCAAAATATAGTGGAATGTCAAGAAACATTAGCCGAATTAGACCAAGAGAATCAAGCTGAACAAATTCAAGAGACTAAAGTTGAACAATTTCAAGAGAATCAAGCTGAACAAAGTCAAGAAAATTTAGTTGAACAGATTCAAGAGAATCAAGCAGAGCAAATTCAAGAGAATCAATCTGAGCAAAATCAAAGTGACAACAAGAAATCTTTTAATGAAGAAATGTCTACGACTGATAACGAGCCGGTAGCGGAGAGACAAGATTCACCTCAAAACGAAACCAGAAGAAGTAAACGTAGATTAGCTCGTCGGACATTCGCTGAGAGAGACTCCGACGAAGAAAACTATTTCGAAAATCTGAATCTCAGTTCTCGACTGAAAAAAGCACAAGCGGATAAAGCAGAAAAGATTTTCTTCATGTGTTATTTGTGTGATAAACAGTTTCTATCAAAGAGCGTTCTGAAGGAGCACATGCATTCTCATGAAGAAGTGAGGAAAGCACTCTCCTTAAAGAAAACGCCGGAGAAGCCGCAGAAGGTGCAGACCAACATCTCCGTCATGAAAACTCCACCATCTGGAAAAAAAGCCAACAAGTGCCCTTATTGCGGTAAAGAGTATCTGTACATAAACTCATTTACTAAACACATTAAACAGCACGAACGAGAACGAGAGGAGACGAAAGAAGACCCTATGCCGCTCGAAATTTCGTTTCACGAAGATGAGCATAGTCTAGATTTTGATGGTAACAATTCGGATAGAGAATGTCGAAAACGAACGAGGAGAGGAAGTAGTACAGTTGACGGATATGATGATGCCACGACAAGCGACAACGACCAGgataaaagaagaaagcgGAACCGCGTCGAAGAATTCGCATGCGACAAATGTTCAGAGAAATTCGATACGAAGCGAAGCTTGCAAAAGCATTCGCTTACGCACGTTAGCTTCAAGTGCAACGTGTGTCATGAGGAGTATGACACTTTGGTCCAACTGAGGAATCACCGAACGAAACATGTAGTCGAAGGCGTACTCACAGAGCAGGATTTGGAAGAAGACATAAAGCAAATGATGACCAAGAGCGAGAACTATGATGACAAAGACAACAAAAACaacgaggaagaggaggatAATGACGGCGAATCCGCCGAACACACAAAGGAACTCAAATGTCAAAAGTGTCCAATGACGTTCTCGCGCAAAAAGTTGCTCTTCAGACACATGGACACGGCACATTCTGGGGCTATCAGCTACGACTGCAAGATATGTCGTCAACAGTTCCCGCGAAAGGATCTTCTACGCAGACACGCCGAACAGCACGCGCGAATAAAGACCTTCAAGTGCACTCAGTGCAACAAAACTTTCGGCAACGAACTCACTCTGAGAAATCACCTGGTTGCCACGAATCATAAAACGTTTATACACGGACAAGAATACGATCCGAACAAGCGTATAAAGCGCGTGGCCGCTAAAGCGGCACAGAAGATCATTGACAAGATCAAAACAGAGGACGGTCTAGAGGATTACGACGACGATAACGACAATGTCGATTACGACGCCAAATTGGACGGGCATTATTACCGCCGTAAGCGTGACGTTACACCAAAGAATTATAAGAAGGAATTAGAATGCGCGACGTGTAATAAGAGGTACAGTTCGAAGCAAGCGTTGACGAAGCACATGGAACAGCATGTGAAAGACGAGAAAGCGGCGGAGAAGTTGAAGAAAACAGCTTCGGAGAAGAAGGAGACGCTGAAAACAAACAATATGACAGGCgataacgacgacgacgatgacgactcGGATTTCGAGAGCGGTCTCGATTGGCCGATGGAAAGTCACGAATGCACCACGTGCAAGAAGCGCTACAGCACGAAGAAATCGCTGCTGCGGCACCAGCTGCTGCACGAGGAACCAAACTTTGAGTGCGACATTTGTAACGTCAAGTTTTATCGTAAGGATAAACTAAAGGCCCACTATGACAAGTGCTCGGAGAAAAATCCCGATCAGGTGAGGAAGTGCAATATATGCGGCGACAGTTTCGAGAATAATGAGATTCTGCGGGAACATCGGGCCAAGCACGTCACTGAGGGTATCTTAACGGAGGAAGATTTGAGGGATATCGAGCCGAAACCAGAGGAGAAGAAACCGGGCCAGAAAATCGGCCGGAAGAGAAGAACCGACATTGTGGGTCTCGAGTGTACCGAATGCAACAAACAATACACCTCCAGGAAAGGTCTTTTGCGACACATTCAGGTACACGAGGGCAAGAAATACTTGTGCGACATATGTCCGAAGAAGTTCTATCGGCGGGAACATCTCAAGATCCACGTGGCCAAACACAACATGATAAAGCCGTACAAGTGCACTCGTTGCACCAAGCGCTTCATCAAGGAGGAGCAGCTCAACAATCATCTGTCCAAACACGATCGTGTCTTCAAGAAGAACAAGGAAACCGACAGCTCGAAGAGATTCCTCTGTGAGATCTGTAGCAAGAGTTTCACGCAATCGACGACGCTGGTAGCTCATTTGCGCGCGCACAACGGCATCAAACCGTACGTGTGCGAGGTCTGCTCCAGGCCGTTCACCACCAACGCCTATCTGAAGATGCATATGCGTACGCACACGCAAGAACGGCCGTACATCTGTCAGTATTGCTCTCGAGCGTTCGCGCGGGCCGACACTCTCGCGAATCACCTGACGTCACATACCGGCGAGGCCAAGTATCACTGTAAATGCTGTCCGAAGAACTTCCGGCGATTGAAGTCACTGAAGGAACACATGTTTATTCATACGGGTCAGCGACCTTACGAATGTCCGACTTGTGATCGCAAGTTCAACAACAACGGCAGCCGTTACGCACACAGCAAGCGCTGCAAGCAGAACCTCCTGCAGAATCAGAATCGCGCCCAGCAGATGATGCAACAACAGGcgcagcaacagcaacaacagcagcagcagcagcaaccaCCACAAGTGCAGATACATCAAATACAGCAGCAGTCGCAAGTCAGGCTGCATCAGTCTACGCTCGGGCAGACGCAGATTGTCAAAGCGCAGAACATTAAGACGATCGCGATAACGAGACAGGCGGAACCGAACACGGTAGGCACGACGCAACAAGTAATGCAACAGGAGATCCTGATGCCCCTCATTTTGCCGCTTACCGTCACCCTCGCCGACGTAGCCGAGGAGGTGATACTACCCGAgggtacaaaaatatataccacTTCTTAA
- Protein Sequence
- MDAVEINTSDPPQSEDAIASAVKICRVCLLDNLMMRDLFHGSEVASLSMKAMSFTNVKMLPGDGLPSQVCCVCAEKLESAYEFKLQVEQADSVLRDKFVGGIIKEELFLNEVEIHLDDETNNDIEEMNVNTDYESTVTVLPEESDADKNFLKEQLMMLEDEKLTNTEEIQQDPEQDNSQEITQEVSHSISEESQQELIDTEDNMSCTVKESRNQKLCINENITPSYIEAIPTEEHDYIMQQQCVLPTEQFSLQERIQQDTQVEQNIVECQETLAELDQENQAEQIQETKVEQFQENQAEQSQENLVEQIQENQAEQIQENQSEQNQSDNKKSFNEEMSTTDNEPVAERQDSPQNETRRSKRRLARRTFAERDSDEENYFENLNLSSRLKKAQADKAEKIFFMCYLCDKQFLSKSVLKEHMHSHEEVRKALSLKKTPEKPQKVQTNISVMKTPPSGKKANKCPYCGKEYLYINSFTKHIKQHEREREETKEDPMPLEISFHEDEHSLDFDGNNSDRECRKRTRRGSSTVDGYDDATTSDNDQDKRRKRNRVEEFACDKCSEKFDTKRSLQKHSLTHVSFKCNVCHEEYDTLVQLRNHRTKHVVEGVLTEQDLEEDIKQMMTKSENYDDKDNKNNEEEEDNDGESAEHTKELKCQKCPMTFSRKKLLFRHMDTAHSGAISYDCKICRQQFPRKDLLRRHAEQHARIKTFKCTQCNKTFGNELTLRNHLVATNHKTFIHGQEYDPNKRIKRVAAKAAQKIIDKIKTEDGLEDYDDDNDNVDYDAKLDGHYYRRKRDVTPKNYKKELECATCNKRYSSKQALTKHMEQHVKDEKAAEKLKKTASEKKETLKTNNMTGDNDDDDDDSDFESGLDWPMESHECTTCKKRYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDSFENNEILREHRAKHVTEGILTEEDLRDIEPKPEEKKPGQKIGRKRRTDIVGLECTECNKQYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCTRCTKRFIKEEQLNNHLSKHDRVFKKNKETDSSKRFLCEICSKSFTQSTTLVAHLRAHNGIKPYVCEVCSRPFTTNAYLKMHMRTHTQERPYICQYCSRAFARADTLANHLTSHTGEAKYHCKCCPKNFRRLKSLKEHMFIHTGQRPYECPTCDRKFNNNGSRYAHSKRCKQNLLQNQNRAQQMMQQQAQQQQQQQQQQQPPQVQIHQIQQQSQVRLHQSTLGQTQIVKAQNIKTIAITRQAEPNTVGTTQQVMQQEILMPLILPLTVTLADVAEEVILPEGTKIYTTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01245372;
- 90% Identity
- iTF_00729509;
- 80% Identity
- -