Basic Information

Insect: Camponotus floridanus
Gene Symbol: -
Assembly: GCA_003227725.1
Location: NW:304661-312211[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 0.065 5.2 7.2 3.1 1 23 422 444 422 444 0.97

2 19 0.011 0.89 9.6 0.5 2 23 481 502 480 502 0.96

3 19 4.7e-05 0.0037 17.1 1.2 1 23 571 593 571 593 0.97

4 19 0.031 2.4 8.2 2.8 1 23 596 618 596 618 0.98

5 19 8.6e-07 6.8e-05 22.5 2.2 1 23 669 692 669 692 0.98

6 19 4.8e-05 0.0038 17.0 1.3 1 23 698 720 698 720 0.95

7 19 0.00044 0.035 14.0 0.7 1 20 726 745 726 750 0.94

8 19 3.7e-05 0.003 17.4 0.9 2 23 823 844 822 844 0.95

9 19 0.00022 0.018 14.9 3.9 1 23 893 915 893 915 0.96

10 19 0.0002 0.016 15.1 0.7 1 20 920 939 920 941 0.94

11 19 0.033 2.6 8.1 0.3 2 23 952 973 952 973 0.97

12 19 2e-05 0.0016 18.2 0.6 2 23 1012 1033 1011 1033 0.97

13 19 1.8e-05 0.0014 18.4 1.6 1 23 1038 1060 1038 1060 0.95

14 19 0.0001 0.0081 16.0 2.8 1 23 1066 1088 1066 1088 0.98

15 19 3.2e-06 0.00026 20.7 0.4 1 23 1104 1126 1104 1126 0.95

16 19 2.6e-07 2.1e-05 24.2 0.6 1 23 1132 1154 1132 1154 0.99

17 19 1.6e-05 0.0013 18.6 0.2 1 23 1160 1182 1160 1182 0.98

18 19 0.017 1.3 9.0 6.9 1 23 1188 1210 1188 1210 0.96

19 19 0.0036 0.28 11.2 0.6 1 20 1216 1235 1216 1237 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	0.065	5.2	7.2	3.1	1	23	422	444	422	444	0.97
2	19	0.011	0.89	9.6	0.5	2	23	481	502	480	502	0.96
3	19	4.7e-05	0.0037	17.1	1.2	1	23	571	593	571	593	0.97
4	19	0.031	2.4	8.2	2.8	1	23	596	618	596	618	0.98
5	19	8.6e-07	6.8e-05	22.5	2.2	1	23	669	692	669	692	0.98
6	19	4.8e-05	0.0038	17.0	1.3	1	23	698	720	698	720	0.95
7	19	0.00044	0.035	14.0	0.7	1	20	726	745	726	750	0.94
8	19	3.7e-05	0.003	17.4	0.9	2	23	823	844	822	844	0.95
9	19	0.00022	0.018	14.9	3.9	1	23	893	915	893	915	0.96
10	19	0.0002	0.016	15.1	0.7	1	20	920	939	920	941	0.94
11	19	0.033	2.6	8.1	0.3	2	23	952	973	952	973	0.97
12	19	2e-05	0.0016	18.2	0.6	2	23	1012	1033	1011	1033	0.97
13	19	1.8e-05	0.0014	18.4	1.6	1	23	1038	1060	1038	1060	0.95
14	19	0.0001	0.0081	16.0	2.8	1	23	1066	1088	1066	1088	0.98
15	19	3.2e-06	0.00026	20.7	0.4	1	23	1104	1126	1104	1126	0.95
16	19	2.6e-07	2.1e-05	24.2	0.6	1	23	1132	1154	1132	1154	0.99
17	19	1.6e-05	0.0013	18.6	0.2	1	23	1160	1182	1160	1182	0.98
18	19	0.017	1.3	9.0	6.9	1	23	1188	1210	1188	1210	0.96
19	19	0.0036	0.28	11.2	0.6	1	20	1216	1235	1216	1237	0.90

Sequence Information

Coding Sequence: ATGGACGCCGTAGAAATAAATACGTCGGGTCCGCCGCAAAGTGAGGACGCGATCGCGTCCGCGGTGAAGATATGCCGCGTGTGCCTGCTCGACAACCCGATGATGCGCGACCTCTTCCTCGAGAGCGAGGTCGCGTCCCTCTCGATGAAAGCGATGAGCTTCACCAACGTTAAGATGTTACCAGGTGACGGCCTACCGGCACAGGTATGCTACATGTGTGCCGACAAACTAGAGTCGGCATATGAATTTAAGTTACAAGTGGAGCAAGCTGACAGTGTCCTTAGAGATAGGTTTGTCGGAGGAATAATAAAGgaagaattatttcttaacGAGGTCGAGATACACTTAGATGATGAAAGAAATGAGGATTTAGAGGAGATGGATGCCAATTATGAATCTACTGTCACAGTTCTATCAGAAGAATCAGACGTTGATAAGAACTTTTTAAAAGAGCAATTAATGATCTTAGAACATGAGAAGTTGACAAATACAGAAGAAATGCAACAAGATCCAGAAGATAATTCAGAGGAGATTACACAAGAAATTAGTCAAAGCATTGCAGAAGAGTCTCAGCAAGAATTACTTGATACAGAAGATAATGATATGTCAAGTACTATCAAAGAATCTAGGAATCAAAAACTTTGTATGAACGAAAATATCACTTCGAGTTATATGGAGGCGATTCCAACAGAGGAAcatgattatattatgcaGCAACAGTGTGTGTTCCCCACTGACCAATTTCCTTTGCAGGAAAGAATACAAGTGGATACACAAGTTGAACAAAGTATAGCGGAATGTCAAGAAACATTATCTGAATTAAATCAAGAGAATAACACTCAacaaattcataataatcaaGTTGAACATATTCAAGAGAATCGAATTGAACAAATTGAAGAGAATCAAGCTGAACAAATTCAAGAAAACCATGTTGAACAGATTCAAGAGAATCAAGCAAATCAAATTCAAGAGAGTCAAGTGGAGCAAATTCAAGAGACTCAAGCAGAACAAATTCAAGAGAATCAATTTGAACAAAATCAAAATGAGgagaataaatcttttaatgaagaaatatctACCACTGATAATGAGCCGGCGATAGGACAAGATTCACCTCAAAACGAAACCAGAAGAAGTAAACGTAGATTAGCTCGTCGGACATTTGCTGAACGGGATTCCGATGAAGAGAATTATTTTGAGAATCTGAATCTCAGTTCTCGATTGAAAAAAGCACAAGCGGATAAAACGGAGAAGATTTTCTTCATGTGTTATTTGTGTGACAAACAGTTCTTGTCAAAGAATGTTCTGAAGGAGCACATGCATTCTCATGAAGAAGTAAGGAAAGCACTCTCCCTAAAGAAAACGCCGGAGAAGCCGCAAAAAGTACAGACCAACATCTCCACTACGAAGACTCCACCATCTGGAAAAAAAGCCAACAAGTGCCCTTATTGCGGTAAAGAGTATCTGTATATAATCTCGTTTACTAAGCACATTAAACAGCACGAACGTGAACGAGAGGAGGCGAAAGAAGACCCTATGCCGCTCGAAATTTCATTCCACGAAGATGAGCACAGTCTAGACTTTGATGGTAACAATTCGGACAGAGAATGTAGAAAACGAACGAGGAGAGGAAGTACAGCTGACGGAAACGACGATGTCAGCGACAACGATCAAGATAAAAGAAGAAAGCGGAATCGCGTTGAAGAATTCGCATGCGACAAATGTCCGGAAAAATTTGATACGAAACGAAGTTTGCAAAAGCATTCGCTCACACATGTTAACTTCAAGTGCAACGTATGTCACGACGAGTACGATACTCTGGTGCAATTGAGAAATCATCGAACGAAGCATGTAGTTGAAGGCGTACTTACAGAGCAGGATTTAGAAGAAGACATGAAGCAGATGATGGCTAAGAGCGATAACTACGATGACGAAGACAATAAAaacgaggaggaagaggaagacgATAATGACGGCGAATCCGTCGAACAAGCGAAGGAATTCAAGTGTCAAAAGTGTCCAACGACATTCTCGCGTAAGAAGTTGCTATCAAAACACATGGAGACGGCACATTCTGGAGCTGGAAGCTATGATTGCAAGATATGTCGTCAACAGTTTACGCGGAAGGACCTTCTGCGCAGACACGCTGAACAGCACGCGCGAATAAAAACTTACAAATGTACTCAATGCAACAAAACTTTCGGCAACGAGCTCACTCTGAGAAATCATCTAGTCGCCACGAATCACAAGACGTTTATACATGGGCAAGAATATGATCCAAACAAGCGTATAAAGCGCGTGGCCGCAAAAGCGGCTCAGAAGATCATTGACAAGATTAAAACGGAGGATGGTCTGGAGGATTATGACGACGATAACGACAATGTCGATTACGACGCCAAATTAGACGGACATTATTACCGCCGTAAGCGTGACGCTACATCAAAGAATTGTAAGAAGGAATTAGAATGCGCGACGTGTAATAAGAGGTACAGTTCGAAGCAAGCACTGACGAAGCACATGGAACAACACGTGAAAGACGAGAAAGCGGCGGAGAAGTTGAAGAAGGCCGCTTCGGACAAGAAGGAGGCGCAAAAAACGAATACAATAGGCGATaatgatgacgacgacgatgactcGGATTTCGAAAGCGGTCTCGATTGGCCGATGGATAGTCACGAATGTGCCACGTGCAAGAAACGCTACAGCACGAAGAAATCGTTGCTACGGCACCAGCTGCTACACGAGGAACCGAACTTCGAATGCGACATTTGCAACGTCAAGTTCTACCGTAAGGATAAGCTAAAGGCGCACTATGATAAGTGCTCCGAGAAGAATCCCGATCAGGTGAGGAAGTGCAATATATGCGGAGACAGTTTCGAGAACAATGAGATCCTGCGGGAACATCGGGCCAAACACGTCACCGAGGGTATCTTAACCGAAGAAGATTTGCGGGACATCGAACCGAAACCCGAGGATAAGAAATCGGGCGAGAAAATCGGTCGAAAGAGAAGAACCGATATCGTGGGCCTCGAATGCACCGAATGCAATAAACAGTATACCTCCAGAAAGGGTCTCTTGCGGCACATTCAAGTACACGAAGGTAAGAAATATTTGTGCGATATATGCccgaagaaattttataggcGGGAACATCTCAAAATCCACGTGGCCAAGCACAATATGATAAAGCCGTACAAGTGCACCCGATGCACCAAACGCTTCATCAAGGAGGAGCAGCTCAACAATCATCTGTCCAAACACGATCGTACCTTCAAGAAGAACAAGGAAACCGATAGCTCGAAGAGATTCCTCTGCGAGATCTGCAGCAAGAGTTTCACGCAGTCGACGACGCTGATAGCTCATTTGCGCGCGCACAACGGCATCAAGCCTTACGTGTGCGAGGTTTGCTCTAGACCGTTCACCACCAACGCCTATCTGAAGATGCATATGCGCACGCATACGCAAGAACGGCCGTACGTCTGTCAGTATTGTTCGCGAGCGTTCGCGCGAGCCGACACTTTGGCGAATCACTTGACATCGCATACCGGAGAGGCCAAGTATCACTGCAAATGTTGTCCGAAGAACTTCCGACGATTGAAGTCATTGAAGGAACACATGTTTATTCATACAGGTCAACGACCTTATGAGTGTCCGACTTGCGACCGCAAGTTCAACAACAACGGCAGCCGTTACGCGCACAGCAAACGTTGTAAGCAGAATCTCTTGCAGAATCAGAACCGTGCTCAGCAGATGATGCAGCAGCAGATACAGCCGCAGCCGcaacaacagcaacagcaACCTCAAGTGCAGATACAGGTACAGCAGCAGTCACAGGTCAGGATGCATCAGACCACGCTTGGCCAAGCGCAGGTTGTCAAAGCGCAAAACATCAAGACGATTGCTATAGCGAGGCAGGCGGAACCGGTGACTACGGTGGCCACGTCGCAGCAAGTGATGCCACAGGAGATACTGATGCCGCTCATTTTGCCGCTTACTGTCACCCTCACTGACGTAGGCGAGGAGGTGATACTACCCGAGGGTACAAAGATATTCACCACTTCTTAA
Protein Sequence: MDAVEINTSGPPQSEDAIASAVKICRVCLLDNPMMRDLFLESEVASLSMKAMSFTNVKMLPGDGLPAQVCYMCADKLESAYEFKLQVEQADSVLRDRFVGGIIKEELFLNEVEIHLDDERNEDLEEMDANYESTVTVLSEESDVDKNFLKEQLMILEHEKLTNTEEMQQDPEDNSEEITQEISQSIAEESQQELLDTEDNDMSSTIKESRNQKLCMNENITSSYMEAIPTEEHDYIMQQQCVFPTDQFPLQERIQVDTQVEQSIAECQETLSELNQENNTQQIHNNQVEHIQENRIEQIEENQAEQIQENHVEQIQENQANQIQESQVEQIQETQAEQIQENQFEQNQNEENKSFNEEISTTDNEPAIGQDSPQNETRRSKRRLARRTFAERDSDEENYFENLNLSSRLKKAQADKTEKIFFMCYLCDKQFLSKNVLKEHMHSHEEVRKALSLKKTPEKPQKVQTNISTTKTPPSGKKANKCPYCGKEYLYIISFTKHIKQHEREREEAKEDPMPLEISFHEDEHSLDFDGNNSDRECRKRTRRGSTADGNDDVSDNDQDKRRKRNRVEEFACDKCPEKFDTKRSLQKHSLTHVNFKCNVCHDEYDTLVQLRNHRTKHVVEGVLTEQDLEEDMKQMMAKSDNYDDEDNKNEEEEEDDNDGESVEQAKEFKCQKCPTTFSRKKLLSKHMETAHSGAGSYDCKICRQQFTRKDLLRRHAEQHARIKTYKCTQCNKTFGNELTLRNHLVATNHKTFIHGQEYDPNKRIKRVAAKAAQKIIDKIKTEDGLEDYDDDNDNVDYDAKLDGHYYRRKRDATSKNCKKELECATCNKRYSSKQALTKHMEQHVKDEKAAEKLKKAASDKKEAQKTNTIGDNDDDDDDSDFESGLDWPMDSHECATCKKRYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDSFENNEILREHRAKHVTEGILTEEDLRDIEPKPEDKKSGEKIGRKRRTDIVGLECTECNKQYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCTRCTKRFIKEEQLNNHLSKHDRTFKKNKETDSSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCSRPFTTNAYLKMHMRTHTQERPYVCQYCSRAFARADTLANHLTSHTGEAKYHCKCCPKNFRRLKSLKEHMFIHTGQRPYECPTCDRKFNNNGSRYAHSKRCKQNLLQNQNRAQQMMQQQIQPQPQQQQQQPQVQIQVQQQSQVRMHQTTLGQAQVVKAQNIKTIAIARQAEPVTTVATSQQVMPQEILMPLILPLTVTLTDVGEEVILPEGTKIFTTS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01245372;
90% Identity: iTF_00729509;
80% Identity: -