Lpla013050.1
Basic Information
- Insect
- Lasius platythorax
- Gene Symbol
- -
- Assembly
- GCA_963971435.1
- Location
- OZ020538.1:1939258-1943790[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.024 4.9 9.3 3.1 1 23 425 447 425 447 0.97 2 19 0.02 4 9.6 0.5 2 23 484 505 483 505 0.96 3 19 8.5e-05 0.017 17.1 1.2 1 23 575 597 575 597 0.97 4 19 0.089 18 7.6 3.1 1 23 600 622 600 622 0.98 5 19 1.6e-05 0.0032 19.3 0.8 2 23 674 696 673 696 0.93 6 19 8.7e-05 0.017 17.0 1.3 1 23 702 724 702 724 0.95 7 19 0.0008 0.16 14.0 0.7 1 20 730 749 730 754 0.94 8 19 6.7e-05 0.013 17.4 0.9 2 23 829 850 828 850 0.95 9 19 0.00058 0.12 14.5 4.1 1 23 900 922 900 922 0.96 10 19 0.00036 0.071 15.1 0.7 1 20 927 946 927 948 0.94 11 19 0.06 12 8.1 0.3 2 23 959 980 959 980 0.97 12 19 3.6e-05 0.0072 18.2 0.6 2 23 1019 1040 1018 1040 0.97 13 19 3.3e-05 0.0066 18.4 1.6 1 23 1045 1067 1045 1067 0.95 14 19 0.00018 0.037 16.0 2.8 1 23 1073 1095 1073 1095 0.98 15 19 5.8e-06 0.0012 20.7 0.4 1 23 1111 1133 1111 1133 0.95 16 19 4.7e-07 9.5e-05 24.2 0.6 1 23 1139 1161 1139 1161 0.99 17 19 5.2e-05 0.01 17.8 0.2 1 23 1167 1189 1167 1189 0.97 18 19 0.03 6.1 9.0 6.9 1 23 1195 1217 1195 1217 0.96 19 19 0.0065 1.3 11.1 0.6 1 20 1223 1242 1223 1244 0.90
Sequence Information
- Coding Sequence
- ATGGACGCCGTAGAAATAAATACGTCGGGTCCGCCGCAGAGTGAGGACGCGATCGCGTCCGCGATGAAAATATGCCGCGTGTGCCTGCTCGACAACCCGATGATGCGCGACCTCTTCCTGGACGGTGAGGTCGCGTCCCTCTCGATGAAAGCGATGAGCTTCACCAACGTTAAgATGTTACCAGGCGATGGTCTACCGGCACAGGTGTGCTGCGTGTGCGCCGACAAACTGGAGTCGGCGTATGAATTTAAGTTACAAGTGGAGCAGGCCGACAGTGTCCTAAGGAACAGGTTTGTCGGAGGGATAATAAAGGAGGAATTGTTTCTTAACGAGGTCGAGATACATTTAGATGCCGATTGCGATAGGAATGATATAGAGGAGATGAATGTCAATACCGACTATGAATCTACTGTCGCAGTTCTGCCAGAAGAATCAGACGTCGATAAGAACTTTTTGAAAGAGCAATTAATGATCTTGGAAGATGAGAAATTGACACATACGGAAGAAATGCAACAAGATTTGGAACAGGATCATTCGCAGGAGATTACACAAGAAGTTAGTCAGAGTATTGTAGAAGAGCAGCAGGAATTAGTTGACACGAAGGATAATGATATGTCAAGTACTATCAATGAATCTAGGAACCAAAAACTTTGCATGaacgaaaatattattccGAGTTATATAGAGGCAATTCCAACAGAGGAACATGATTACATTATGCAGCAACAGTGTGTGTTGCCAGCTGAACAATTTCCTTTGCAAGAAAGTATACAGATGGACACACAAGTTGAACAAAGTATAGTGGAATGCCAAGAAACATTATCTGAATTTAATCAAGAGGATCAAGTTGAACAAATTGAAGAGAATGAAGCAGAACAAATTGAAGAGAATCAAGCTGAACAAATTCAAGAATATCAAGTGGAGCAAATTCAAGAATATCAAGCGGAGCAAATTGAAGAGACTCAAGTGGAGCAAATTCAAGAGACTCAATTGGAGCAAATTCAAGAGACTCAAGTGGAGCAAATTCAAGAAAATCAATCTGAGCAAAATCAAACTGacgacaagaaattttttaatgaagaaatgTCTACGACTGATAACGAACCGGCAGTGGGACAAGATTCACCTCAAAACGAAACCAGAAGAAGTAAACGTAGATTAGCTCGTCGAACGTTCGCTGAGCGAGATTCCGACGAAGAGAACTATTTCGAAAATCTGAATCTTAGTTCTCGACTGAAAAAAGCACAGGCGGATAAGGCGGAGAAGATCTTCTTTATGTGTTATTTGTGTGACAAACAGTTCCTGTCGAAGAGCGTTCTGAAGGAGCACATGCACTCTCATGAAGAAGTGAGGAAAGCGCTCTCCCTAAAGAAAACGCCGGAGAAGCCGCAGAAGATGCAGACCAACATATCCGCCACGAAGACTCCGCCATCTGGAAAAAAAGCCAACAAGTGCCCTTATTGCGGTAAAGAGTATCTGTACATAATCTCGTTTACTAAGCACATTAAACAGCACGAGCGGGAGCGAGAGGAGGCGAAAGAGGACCCTATGCCGCTCGAAATTTCGTTCCACGAAGATGAGCATAGTCTAGACTTTGATGGTAACACTTCGGACAGAGAATGTAGAAGACGAACGAGGAGAGGAAGTACAGCCGACGGGAACGACGACGCCACGACGAGCGACAACGAACAcgataaaagaagaaaacggAATCGCGTCGAATTCGCATGCGACAAATGTCCAGAGAAATTTGATACGAAGCGAAGCTTGCAAAAGCACTCGCTCACGCACGTTAGCTTCAAGTGCAACCTGTGTCACGACGAGTACGACAGTCTGGAGCAACTGAGAAATCATCGAACGAAACACGTGATCGAAGGCGTACTCACCGAGCAGGATTTGGAAGAGGACATGAAACAGATGATGGTCAAGAGCGTCGAGAACTACGATGACGAAGACAACAAAAACgacgaggaagaggaggacAATGACGGCGAATTCATCGAACATGCGAAGGAACTCAAGTGTCAGAAGTGTCCGATGACGTTCTCGCGCAAGAAGTTGCTGTCCAGACACATGGAGGCGGCGCATTCTGGAACTAACAGCTACGATTGCAAGATATGTCGTCAACAGTTCACGCGGAAGGATCTTCTGCGCAGACACGCCGAGCAGCACGCGCGAGTAAAGACCTACAAGTGCACTCAGTGCAACAAAACTTTCGGCAACGAGCTCACTCTGAGAAATCACCTGGTCGCCACGAATCACAAGACGTTTATACATGGACAAGAATACGATCCGAACAAGCGTATAAAGCGCGTGGCCGCGAGAGCGGCGCAGAAGATCATTGACAAGATCAAAACGGAGGACGGTCTGGAGGATTATGACGACGATAACGACAATGTCGATTACGACGCCAAGTTGGACGGGCATTATTACCGCCGTAAGCGCGACGCTACACCAAAGAAGTACAATTGTAAGAAGGATTTAGAGTGCGCGACGTGTAATAAGAGATACAGTTCGAAGCAAGCGTTGACGAAGCACATGGAGCAGCATGTGAAAGACGAGAAAGCGGCGGAGAAGTTGAAGAAGGCCACTTCGGAGAAGAAGGAGACGCAGAAGTCGAATAACATGACAGGCgataacgacgacgacgacgatgactcGGACTTCGAGAGCGGTCTCGATTGGCCGATGGACAGTCACGAATGCGTCACGTGCAAGAAACGCTACAGCACGAAGAAGTCGCTGCTGCGGCACCAGCTGCTGCACGAGGAACCGAACTTCGAGTGCGACATTTGCAACGTCAAGTTCTATCGTAAGGACAAGCTAAAGGCGCACTACGACAAGTGCTCGGAGAAGAATCCCGATCAGGTGAGAAAGTGCAATATTTGCGGCGACAGTTTCGAGAACAATGAGATCCTGCGGGAACACCGGGCCAAGCACGTCACCGAGGGTATCTTAACGGAGGAGGATTTGAGGGACATCGAGCCGAAACCGGAGGAGAAGAAACCGGGCGAGAAGATCGGCCGGAAGAGGCGAACCGATATCGTGGGCCTCGAGTGTACCGAGTGCAACAAGCAGTACACCTCCAGGAAGGGTCTTCTGCGGCACATTCAGGTACACGAGGGCAAGAAATACCTGTGCGACATATGCCCGAAGAAGTTCTATCGGCGGGAGCATCTCAAGATCCACGTGGCCAAGCACAATATGATAAAGCCGTACAAGTGCACCCGCTGCACGAAGCGCTTCATCAAGGAGGAGCAGCTCAACAATCATCTGTCCAAGCACGATCGTACCTTCAAGAAGAACAAGGAAACCGACAGCTCGAAGAGATTCCTCTGCGAGATCTGCAGCAAGAGCTTCACGCAATCGACGACGCTGATAGCTCATCTGCGCGCGCACAACGGCATCAAGCCGTACGTGTGCGAGGTCTGCTCCAGGCCGTTCACCACCAACGCCTACCTGAAGATGCACATGCGCACCCACACGCAAGAACGGCCGTACATCTGTCAGTACTGCTCGCGAGCGTTCGCGCGGGCCGACACCCTGGCGAATCATCTGACGTCGCACACCGGCGAGGCCAAGTATCACTGCAAATGCTGCCCGAAGAACTTCCGGCGATTGAAGTCCCTCAAGGAGCACATGTTTATTCATACGGGTCAGCGACCTTACGAGTGTCCGACCTGCGACCGCAAGTTCAACAACAACGGCAGCCGCTACGCGCACAGCAAGCGCTGCAAGCAGAACCTCCTGCAGAATCAGAACCGCGCTCAGCAGATGATGCAGCAACAGGCGCAGCcgcaacagcagcaacagcaacctCAGCAGGTGCAGATACAAGTGCAGCAACAGCCGCAGTCGATCAGGATGCATCAGACCACGCTTGGCCAAGCGCAGATTGTCAAGGCGCAGAGCATCAAGACGATCGCTATAGCGAGGCAAGAACCGACCACGGTGGCCACGACGCAGCAGGCGATGATGCAACAGGAGATACTGATGCCGCTCATTCTGCCGCTCACCGTCACCCTCACCGACGTAGGCGAGGAGGTGATACTACCCGAAGGCACAAAGATATTCACCACTTCCTAA
- Protein Sequence
- MDAVEINTSGPPQSEDAIASAMKICRVCLLDNPMMRDLFLDGEVASLSMKAMSFTNVKMLPGDGLPAQVCCVCADKLESAYEFKLQVEQADSVLRNRFVGGIIKEELFLNEVEIHLDADCDRNDIEEMNVNTDYESTVAVLPEESDVDKNFLKEQLMILEDEKLTHTEEMQQDLEQDHSQEITQEVSQSIVEEQQELVDTKDNDMSSTINESRNQKLCMNENIIPSYIEAIPTEEHDYIMQQQCVLPAEQFPLQESIQMDTQVEQSIVECQETLSEFNQEDQVEQIEENEAEQIEENQAEQIQEYQVEQIQEYQAEQIEETQVEQIQETQLEQIQETQVEQIQENQSEQNQTDDKKFFNEEMSTTDNEPAVGQDSPQNETRRSKRRLARRTFAERDSDEENYFENLNLSSRLKKAQADKAEKIFFMCYLCDKQFLSKSVLKEHMHSHEEVRKALSLKKTPEKPQKMQTNISATKTPPSGKKANKCPYCGKEYLYIISFTKHIKQHEREREEAKEDPMPLEISFHEDEHSLDFDGNTSDRECRRRTRRGSTADGNDDATTSDNEHDKRRKRNRVEFACDKCPEKFDTKRSLQKHSLTHVSFKCNLCHDEYDSLEQLRNHRTKHVIEGVLTEQDLEEDMKQMMVKSVENYDDEDNKNDEEEEDNDGEFIEHAKELKCQKCPMTFSRKKLLSRHMEAAHSGTNSYDCKICRQQFTRKDLLRRHAEQHARVKTYKCTQCNKTFGNELTLRNHLVATNHKTFIHGQEYDPNKRIKRVAARAAQKIIDKIKTEDGLEDYDDDNDNVDYDAKLDGHYYRRKRDATPKKYNCKKDLECATCNKRYSSKQALTKHMEQHVKDEKAAEKLKKATSEKKETQKSNNMTGDNDDDDDDSDFESGLDWPMDSHECVTCKKRYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDSFENNEILREHRAKHVTEGILTEEDLRDIEPKPEEKKPGEKIGRKRRTDIVGLECTECNKQYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCTRCTKRFIKEEQLNNHLSKHDRTFKKNKETDSSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCSRPFTTNAYLKMHMRTHTQERPYICQYCSRAFARADTLANHLTSHTGEAKYHCKCCPKNFRRLKSLKEHMFIHTGQRPYECPTCDRKFNNNGSRYAHSKRCKQNLLQNQNRAQQMMQQQAQPQQQQQQPQQVQIQVQQQPQSIRMHQTTLGQAQIVKAQSIKTIAIARQEPTTVATTQQAMMQQEILMPLILPLTVTLTDVGEEVILPEGTKIFTTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01245372;
- 90% Identity
- iTF_00729509;
- 80% Identity
- -