Ecen027227.1
Basic Information
- Insect
- Eupithecia centaureata
- Gene Symbol
- lrrfip2
- Assembly
- GCA_944548335.1
- Location
- CALYMU010001489.1:120929-139059[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.8e-68 2.9e-64 218.0 24.6 1 271 117 393 117 415 0.86 2 2 2 3.1e+04 -6.8 14.6 8 167 419 475 412 486 0.48
Sequence Information
- Coding Sequence
- ATGATGGGACATCGTTCAGAAATGGCTACCCCAGATCACAGTGACGAAGAGAGCGGAGATGCCTTCACTGACGGGGACTTCGGGGACTCCGATGACGAGACCATCCGCGGCGTGAACCAAGATATTCATGTCACCGAAACAGTGAATGAAGAAGTTCAGCAAAAGTTAACTAATGGTAATTCACAAAATAATGGCTATAAAGAGTTGGACGATGAACCAAAAACTAACGGACGTATAAAAAGTGAACCATCTAGCGATGTGGAAAGCAGCATTGCAGCAATAAGGCGGGATTCTCACGGCGACCAGAACCCTTCAATTGTGGGGATTATCGGAGATCAGCACAGCCATGCGGAGCAACGCCTGGCAGCACGAAGGGCGGCGCGCGCCGAGGCTCGCGAGATCCGCATGAGAGAGTTGGAGCGGCAGCAGAGGGAGCAAGAGGACCATGCTGACAAGGCGTATGACATGTATGCAGAGACGGTCGGCAGAAGGGGTCCTCGGCTGGCGGCGCTCAGTCCCGCGATCTCGCATTCGCCGCGGCGGAGTTCAGAAGACTCGGTGGACGAGTCCTTCAGTATCAAGGACTTGAGGCACGACCTTAAAGAAGTAGAGGAGAAGTTCCGGAAGGCGATGATCCTGAACGCGCAGCTGGACAACGACAAGGCCTCGCTGGGCTACCAGCTCGAGCTGCTGAAGGACCGCATCGACGAGCTGCAGGAGGACTACGCACAGTTGCAGCGAGAACACCGAGAGAAATGTTCAGTCTACGAGCGGTTGAAGCGAGATCACGTGTGCGTGGAGCGCGAGCTGACCGCGGCGCGGGACGCCGTGCGCGCGcgcgacgccgccgccgccgccgcgggcCGCGTGTTCTGCGAGGCGCCGCCCGGCGCGCAGGCGCCCGGCTTTGGGGACGTGCCGCCGCTAGCGCTGCTCACGCAGGAGGTGGACACGCTGCTGGGTGACGGAGAGGCCACGCTAGCGCTGCTCACGCAGGAGGTGGACACGCTGCTGGGCGACGGAGAGGCCACGCTAGACGTACGGTTGCAGAATCTTATCACCGCAAAACAGTCTCTTGAAAGCGAAGTGCGCAAACTGAAGCTGACATTAAACGAAGAACGCGCCGCGCGGCAGAACGGCGTCGCGTCGCATCACGACGAGCACTACGAGAACGAATTGGAGAGCCTCCGCAAGGTGTCtctggaggcgaaggcgcgggcggcgcgcgcggagGCCGAGGCGGCGCTGCAGGCGGCGGCGAGCGCGCGGCTGGAGGCGCAGGTGCAGCGCCTGCGCCAGCGGCAGGGGGACCACGACGAGGCCGAGGAGCAGCTCAAGCAGGAGCGCCGCAAGCTGCAGAGAGAGGCGCGAGAAGCACTCAACCGGGTTGAAGAATTGGAGACGGAGAATAGCCACCTCACCAAGCGACTCGATAAACTGAAAAACGCTAAATCTGCCCTTCTCAAGGATCTGTGA
- Protein Sequence
- MMGHRSEMATPDHSDEESGDAFTDGDFGDSDDETIRGVNQDIHVTETVNEEVQQKLTNGNSQNNGYKELDDEPKTNGRIKSEPSSDVESSIAAIRRDSHGDQNPSIVGIIGDQHSHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRGPRLAALSPAISHSPRRSSEDSVDESFSIKDLRHDLKEVEEKFRKAMILNAQLDNDKASLGYQLELLKDRIDELQEDYAQLQREHREKCSVYERLKRDHVCVERELTAARDAVRARDAAAAAAGRVFCEAPPGAQAPGFGDVPPLALLTQEVDTLLGDGEATLALLTQEVDTLLGDGEATLDVRLQNLITAKQSLESEVRKLKLTLNEERAARQNGVASHHDEHYENELESLRKVSLEAKARAARAEAEAALQAAASARLEAQVQRLRQRQGDHDEAEEQLKQERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00696489; iTF_00705030; iTF_00700140; iTF_00703984; iTF_00698334; iTF_00706033; iTF_00699186; iTF_00701084;
- 90% Identity
- iTF_00699186;
- 80% Identity
- -