Esub023421.1
Basic Information
- Insect
- Eupithecia subumbrata
- Gene Symbol
- lrrfip2
- Assembly
- GCA_949316285.1
- Location
- OX438646.1:16251228-16268541[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.1e-72 1.1e-67 229.4 19.8 1 271 120 378 120 401 0.87 2 2 0.54 1.9e+04 -4.5 11.7 118 170 411 463 405 474 0.78
Sequence Information
- Coding Sequence
- ATGGGACATCGTTCAGAAATGGCCACCCCAGATCACAGTGACGAAGAGAGCGGAGATGCCTTCACTGACGGGGACTTTGGGGACTCCGACGACGAGACTATCCTGGAACGCGGCGTGAACCAAACGTCTGATATTCCTATCAATGAAACAATCAATGAAGAAGTTCAGCAAAAGTTAACCAATggtaatttacaaaataatggcTATAAAGAGTCACACGATGAACAAAAAACTAACGGATTTATAAATAGTGAACCATCTAGTGATCTGGAAAGCGGCATTGCAGCCGTGAGGCGGGATTCTCACGGCGATCAGAACCCTTCGATTGTTGGGATTATTGGAGACCAGCACAGCCATGCGGAACAACGCCTAGCAGCTCGAAGGGCGGCGCGCGCGGAGGCTCGCGAGATCCGCATGAGGGAGTTGGAGCGGCAGCAGAGAGAACAAGAGGACCATGCAGACAAGGCGTATGACATGTATGCAGAGACGGTCGGCAGGCGGGGTCCTCGGCTGGCGGCTCTCAGTCCCGCGATCTCGCATTCGCCGCGGCGGAGTTCAGAAGACTCAGTCGACGAGTCATTTAGTATCAAAGACTTGAGGCACGACCTAAAAGAAGTAGAAGAAAAGTTCCGAAAGGCGATGATCCTCAATGCCCAGCTGGACAACGACAAGGCGTCGCTGGGCTATCAGCTCGAGCTCCTGAAGGACCGGATCGACGAGCTGCAGGAGGACTATGCACAGTTGCAGCGAGAACACCGAGAGAAGTGTTCAGTCCACGAGCGGCTGAAACGCGAGCACGTTTGCGTGGAGCGCGAGCTGACCGCGGCGCGGGACGCCGTGCGGGCgcgcgacgccgccgccgccgccgccggccgcgtCTTCTGTGAGGCGCCGCCCGGCGCGCAGGCCGCCGGCTTCGGGGACGTGCCGCCGCTAGCACTGCTCACGCAGGAGGTGGACCAACTGCTGGGCGACGGAGAGGCCACGCTAGACGTACGGTTGCAGAATCTGGTCACCGCAAAGCAGTCTCTAGAAAGCGAAGTGCGCAAACTGAAGCTGACGTTAAACGATGAACGTGCCGCGCGACAGAACGGCGTCGCGTCCCATCACGACGAGCACTATGAGAACGAATTGGAGAGTCTCCGCAAGGTGGCGCTAGAAGCGaaggcgcgggcggcgcgcgcggaGGCCGAGGCGGCGCTGCAGGCGGCGGCGAGCGCGCGGCTcgaggcgcaggtgcagaggctGCGGCAGCGGCAGGGCGACCACGACGAGACCGAGGAGCAGCTCAAGCAGGAGCGCCGCAAGCTGCAGAGAGAGGCGCGCGAGGCCCTCAACCGGGTTGAAGAGCTGGAGACAGAGAACAGCCACCTCACCAAGCGACTTGATAAACTGAAAAACGCTAAATCTGCACTCCTCAAGGACCTGTGA
- Protein Sequence
- MGHRSEMATPDHSDEESGDAFTDGDFGDSDDETILERGVNQTSDIPINETINEEVQQKLTNGNLQNNGYKESHDEQKTNGFINSEPSSDLESGIAAVRRDSHGDQNPSIVGIIGDQHSHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRGPRLAALSPAISHSPRRSSEDSVDESFSIKDLRHDLKEVEEKFRKAMILNAQLDNDKASLGYQLELLKDRIDELQEDYAQLQREHREKCSVHERLKREHVCVERELTAARDAVRARDAAAAAAGRVFCEAPPGAQAAGFGDVPPLALLTQEVDQLLGDGEATLDVRLQNLVTAKQSLESEVRKLKLTLNDERAARQNGVASHHDEHYENELESLRKVALEAKARAARAEAEAALQAAASARLEAQVQRLRQRQGDHDETEEQLKQERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00697364;
- 90% Identity
- iTF_00699186;
- 80% Identity
- -