Echr011470.1
Basic Information
- Insect
- Epirrita christyi
- Gene Symbol
- -
- Assembly
- GCA_951392215.1
- Location
- OX595845.1:760886-771198[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 9.2e-12 1.1e-08 35.3 0.0 4 39 179 215 176 219 0.89 2 4 3.4e-11 4.1e-08 33.5 0.3 2 39 231 268 230 271 0.92 3 4 9.5e-16 1.2e-12 48.1 0.1 2 45 286 330 285 330 0.96 4 4 7.3e-19 8.9e-16 58.1 0.0 1 44 337 381 337 382 0.96
Sequence Information
- Coding Sequence
- ATGCCTGGCTCCGGAACTGCTGCCGTAAAATGTGAGCCTCCGTCTGATGAAGAAGACAACAGTCCTGAGTTACCCGACCTCTTCCTAAATATCACGCTTCCCTCAGAATTCCATTCGCTCACTTCTGTAAAAGTCGAAGCTGGGTACCACGTCAATGATGAGGGTATGCCGACGTTGCTGCAACATTTACggAGTCCAGAAGGGCTGGAGGAGCTGGCCCCCCTGGCGCCGGCAGCCCCCGCGGCTACCCCCGTCTGCGTGAAACAGGAACCGGCGGAGAGCCCTGCGTTGAATCTAGAAACCTTGGAGTCTGCTTCACATAGCACGAGCTCTTTATTGGAGAGACACATGGCGATAATGAGGTCATCTGAAGCGCCGGATTCTGCCAACTTCACGCCACTCTCACTTCACTCTGTCAAGGATGAGGCGTCTTCAGAAGGAGAACAACAGCACCTCAGCAGCGATGAGCTGAGCGACTCCTGCGGGCTGGCGGAGTCCTCCACGCGAGGCAGTCCCAAGAGCTGGACGCAGCAGGACATGGACAACGCACTGGATGCGCTCAGGAACCGCAACATGAGTTTGACAAAGGCATCATCAACATACGGTATCCCGTCGACAACTCTCTGGCAGCGCGCGCACCGCCTAGGCATCGACACGCCGAAGAAGGAGGGCGCCACCAAGTCGTGGAGCGAGGCTGACCTGCGTGGGGCGCTCCACGCGCTTAGAGCTGGGGCTATATCTGCTAACAAGGCCAGCAAGGCTTATGGTATTCCCAGCAGTACACTGTACAAGATAGCGCGTCGCGAGGGCATCCGACTGGCCGCCCCCTTCAACGCAGCCCCCGTGTCGTGGCGGCGCGGGGACCTCCAGCGCGCGCTGGCTGCCATACGCGCCGGCCGGGCCTCCGTACAGCGAGCTGCCTCGCAGTATGGAATTCCTACtgGCACTCTTTACGGGCGTTGTAAACGAGAAGGGATTGAGTTATCTCGATCGAACCCTACACCTTGGTCTGAGGATGCTATGGGAGAGGCATTAGAAGCCGTCAGGGTTGGTCAGATGTCAATAAACCAGGCAGCCATTCACTACAACTTGCCATATTCTTCGCTTTACGGAAGATTTAAGAGATGCAAGTATCAGGCAcagCCCATGCCACATCAAGAAGTGCAAAACCCTCCTGAAATGGCCCAGACACAGCAAGATCTCAACTATTACCATCAGATACCCATGTATCCAGAACACGAGCACAGCATCCAACATCCATACTCTCACGAGATTGTTCACGATACATCGCCGCGCGGTAACTCGATGCTTCAAGACTCCTATTCAGGGCCAGCAATGTATTACAACCAGAACTTTAGCAGCATAGTGACCACCTGA
- Protein Sequence
- MPGSGTAAVKCEPPSDEEDNSPELPDLFLNITLPSEFHSLTSVKVEAGYHVNDEGMPTLLQHLRSPEGLEELAPLAPAAPAATPVCVKQEPAESPALNLETLESASHSTSSLLERHMAIMRSSEAPDSANFTPLSLHSVKDEASSEGEQQHLSSDELSDSCGLAESSTRGSPKSWTQQDMDNALDALRNRNMSLTKASSTYGIPSTTLWQRAHRLGIDTPKKEGATKSWSEADLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPVSWRRGDLQRALAAIRAGRASVQRAASQYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQAQPMPHQEVQNPPEMAQTQQDLNYYHQIPMYPEHEHSIQHPYSHEIVHDTSPRGNSMLQDSYSGPAMYYNQNFSSIVTT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00856517; iTF_01170492; iTF_01171386; iTF_00377021; iTF_00361534; iTF_01182590;
- 90% Identity
- -
- 80% Identity
- -