Paff016282.1
Basic Information
- Insect
- Perizoma affinitatum
- Gene Symbol
- -
- Assembly
- GCA_961405105.1
- Location
- OY560200.1:12250974-12259485[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.2e-11 1.1e-08 35.2 0.0 4 39 179 215 176 219 0.90 2 4 7e-11 3.3e-08 33.6 0.3 2 39 231 268 230 272 0.92 3 4 4.7e-16 2.2e-13 50.1 0.1 2 45 286 330 285 330 0.96 4 4 1.5e-18 7.3e-16 58.1 0.0 1 44 337 381 337 382 0.96
Sequence Information
- Coding Sequence
- ATGCCCGGCTCCGAAACTGCTACCGTAAAATGTGAACCTCTCTCCGACGAAGAAGACAATATTTCTCAGTTACCAGAACTCTTCATAAATAATACGctCCTCTCAGAATTCCAGTCGCTCACTTCTGTGAAACCTGGTGCAGATTGCCACAATGATGATGTTATGCCGTCATTGCTCCACCATTTACGGAGTCCCGAAGGTCTGGAAGAGCTGGCCCCCCTGGCGCCGGCGGGTCCCGCGGCGACCCCGGTCTGCGTGAAGCAGGAGCTGAGGGACCGCTCTGCGCTGGACCTCGAGACCTTGGAGCCCGCCCTACCCCTACATAGAACGGGCTTGGTATTGGAGAGACACCACATGGCGATATTGATGTCACCTGAACTGCCTGACTCGGCGAACTTCACGCCGCTGCTGGCTGTCAAGGATGAGCCATCTTCGGAAGGAGAGCAACAGTACCTGAGCGGCGATGATCTGAGTGACTCGTGCGCGTTAGCGGAGCCCTCGACGCGGGGCAGCCCCAAGAGCTGGAGACAGCAGGACATGGACAATGCACTGGATGCTTTAAGGAATCACAACATGAGTTTGACTAAGGCATCATCAACTTACGGCATCCCATCGACCACGCTCTGGCAGCGAGCGCATCGTCTCGGCATCGATACGCCGAAGAAGGAAGGAACCACAAAGTCCTGGAGCGAGGCTGATCTGCGAGGTGCTCTCCACGCGCTGAGAGCCGGCGCTATATCCGCTAACAAGGCCAGCAAGGCTTATGGTATTCCGAGCAGCACCTTGTACAAGATAGCTCGTCGCGAGGGTATCCGTCTGTCCGCGCCGTTCAACGCGGCGCCGGTGTCGTGGCGGCGCGGGGACCTGCAGCGCGCGCTGGCAGCCATCCGCGCCGGACGCGCCTCCGTGCAGCGCGCCGCCTCGCACTACGGGATCCCTACCGgCACTCTTTATGGACGTTGTAAACGGGAAGGCATAGAGCTGTCCCGATCGAACCCAACGCCGTGGTCTGAAGATGCTATGGGTGAGGCCCTGGAAGCAGTCAGGGTTGGTCAGATGTCCATTAACCAGGCAGCTATACACTACAACCTGCCATATTCTTCATTGTACGGAAGATTCAAGAGGTGCAAATATCAGGCACAGCCCACGTCTCAGCAAGAAGTGCCTCACGCTCCTGAGATGGTCCAAAACCAGCAAGATTTGAACTACTTCCATCAAATGTTCGTGTACCCTGAACAGGAGCACTCCATCCATCACCCATACCCTCACATTGTTCAAGATACATCGACGCACGGCAGCGCGATGTCTCAAGATCCTTATACTGGGCAAGCGGTGTATTACAACCAGAGTTTTAGCAGCATTGCAACCAGCTGA
- Protein Sequence
- MPGSETATVKCEPLSDEEDNISQLPELFINNTLLSEFQSLTSVKPGADCHNDDVMPSLLHHLRSPEGLEELAPLAPAGPAATPVCVKQELRDRSALDLETLEPALPLHRTGLVLERHHMAILMSPELPDSANFTPLLAVKDEPSSEGEQQYLSGDDLSDSCALAEPSTRGSPKSWRQQDMDNALDALRNHNMSLTKASSTYGIPSTTLWQRAHRLGIDTPKKEGTTKSWSEADLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLSAPFNAAPVSWRRGDLQRALAAIRAGRASVQRAASHYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQAQPTSQQEVPHAPEMVQNQQDLNYFHQMFVYPEQEHSIHHPYPHIVQDTSTHGSAMSQDPYTGQAVYYNQSFSSIATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00663004;
- 90% Identity
- iTF_01171386;
- 80% Identity
- -