Cpec010921.1
Basic Information
- Insect
- Colostygia pectinataria
- Gene Symbol
- -
- Assembly
- GCA_951394395.1
- Location
- OX596360.1:12025971-12032952[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 1.8e-10 1.1e-07 31.8 0.0 4 39 177 213 174 217 0.89 2 5 6.5e-11 4e-08 33.2 0.2 3 39 230 266 228 269 0.91 3 5 2.6e-15 1.6e-12 47.3 0.1 2 45 284 328 283 328 0.95 4 5 1.2e-16 7.4e-14 51.6 0.0 1 38 335 373 335 377 0.94 5 5 1.8 1.1e+03 -0.2 0.0 28 44 427 444 427 445 0.91
Sequence Information
- Coding Sequence
- ATGCCCGGCTCCGGAAGTGCTGTCGTAAAATGTGAGCCGCAGTCTGATGAAGAAGATGACAGTTCACTGTTGCCTGACCTCTTTCTCAATAATAcgCTTCCCTCAGAACTGTACTCACTCACTTCTGTAAAAGCAGAAGCATGTTGTCACAGTGACGAAGGCATGCCGACGATGCTGCAGCACTTGCAACATAGTCCTGAAGCGCTGGAAGAGCTGGCCCCGCTGGCTCCAGCAGGGCCTGCGGCCACGCCTGTCTGCGTGAAGCAAGAGCCAGTGGAAAGCCCTGCCATAGATCTAGAGACCTTAGAGTCTGCTCCACATTGCACGggATATTTTTTGGAGAGACACATGGCGGATATGAGAACAAATGAAGTGCCCGATTCCGCTAACTTTACGCCACTGCTAATGATCAAGGACGAGCCTTCTTCTGAAGGAGAACAACAACATCTCAGTAGTGACGAGCTAAGTGACTCATGCGGCTTAGCGGAGCCCTGCATTCGTGGGAGCCCTAAAAGTTGGACCCAGCAGGATATGGACAACGCATTGGATGCGCTCAAAAATCACAACATGAGTTTGACAAAAGCATCATCAACATACGGTATCCCGTCGACCACTCTCTGGCAGCGCGCTCATCGGCTCGGCATCGACACGCCAAAGAAAGAAGGCGCCGCCAAGTCTTGGAACGAGGCTGACCTGCGCGGAGCACTTCACGCACTGAGAGCTGGTGCTATATCTGCTAACAAAGCCAGCAAAGCTTATGGCATCCCGAGCAGCACGCTGTACAAGATAGCGCGGCGCGAGGGCATCCGGCTGGCGGCGCCGTTCAACGCGGCGCCGGTGGCGTGGCGCCGCGGCGACCTGCCGCGCGCACTCGCCGCCATCCGCGCCGGCCGCGCCTCCGTGCAGCGCGCCGCCTCGCACTACGGCATCCCCACCGGCACTCTCTATGGGCGTTGTAAACGAGAAGGCATAGAGCTATCCAGATCTAACCCTACACCTTGGTCTGAAGACGCAATGGGCGAAGCACTTGAAGCCGTCAGGATTGGCCAAATGTCAATAAACCAGGCAGCCATTCATTACAATTTGCCATATTCATCACTTTACGGAAGATTCAAACGGTGCAAGCATCAGCCTCAGGTAAACAGTTTGCCCGTGCCACAAGAAATGCAAAATGCTTCTGAAACAGTCAACAACCAGCAAGAAATGCAATATTACCATCAACTGCCAGTATACCCAGAACAAGACCATTCCTTGGCCCAGCATCCGTACCCTCCTCTCGTCCCTGATTCATCGGTGCAGAGCATGGTTCTGCAAGACCACTATTCAGCTCAAACGATGTATTACAACCAGAACTTCAGCAGCATAGCGACTAGCTGA
- Protein Sequence
- MPGSGSAVVKCEPQSDEEDDSSLLPDLFLNNTLPSELYSLTSVKAEACCHSDEGMPTMLQHLQHSPEALEELAPLAPAGPAATPVCVKQEPVESPAIDLETLESAPHCTGYFLERHMADMRTNEVPDSANFTPLLMIKDEPSSEGEQQHLSSDELSDSCGLAEPCIRGSPKSWTQQDMDNALDALKNHNMSLTKASSTYGIPSTTLWQRAHRLGIDTPKKEGAAKSWNEADLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPVAWRRGDLPRALAAIRAGRASVQRAASHYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRIGQMSINQAAIHYNLPYSSLYGRFKRCKHQPQVNSLPVPQEMQNASETVNNQQEMQYYHQLPVYPEQDHSLAQHPYPPLVPDSSVQSMVLQDHYSAQTMYYNQNFSSIATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00663004;
- 90% Identity
- -
- 80% Identity
- -