Pfla010510.1
Basic Information
- Insect
- Perizoma flavofasciatum
- Gene Symbol
- -
- Assembly
- GCA_958496245.1
- Location
- OY292431.1:638306-647566[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.3e-11 1e-08 35.1 0.0 4 39 184 220 181 224 0.90 2 4 4.1e-11 3.2e-08 33.5 0.3 2 39 236 273 235 276 0.92 3 4 2.7e-16 2.1e-13 50.1 0.1 2 45 291 335 290 335 0.96 4 4 8.9e-19 6.9e-16 58.1 0.0 1 44 342 386 342 387 0.96
Sequence Information
- Coding Sequence
- ATGCCCGGCCCCGAAACTGCTACCGTAAAATGTGAACCTCTCTCCGACGAAGACGATAACATTCCTCAGTTACCAGAACTCTTCATTAACAATACGcTACCCTCAGAATTCCAGCCGCTCACTACCGCGGCTTTCACTTCTGTGAAAGCCGGTGCAGATTGCCACAATGATGATGTTATGCCGTCATTGCTCCACCATTTACGGAGTTCCGAAGGTCTGGAAGAGCTGGTCCCGCTGGCGCCGGCGGGCCCCGCGGCGACCCCGGTCTGCGTGAAGCAGGAGCCGAGGGAACGCCCTGCGTTGGACCTCGAGACCTTGGAGCCCGCCCTACCCCGACATAGCACGGGCTCGGTATTGGAGAGACACCACATGGCGATGTTGAGGTCACCTGAACTGCCCGACTCGGCCAGCTTCACGCCGCTGCTGGCTGTCAAGGATGAGCCATCGTCGGAAGGAGAGCAACAGTACCTGAGCGGCGATGAGCTGAGCGACTCGTGCGCGTTAGCGGAGCCTTCGACGCGAGGCAGCCCCAAGAGCTGGAGACAGCAGGACATGGACAATGCACTGGATGCTTTAAGGAATCACAACATGAGTTTGACTAAGGCATCATCAACATACGGCATCCCATCTACCACGCTCTGGCAGCGAGCGCACCGGCTCGGCATCGATACGCCGAAGAAGGAAGGAATCACAAAGTCCTGGAGCGAGGCTGATCTGCGAGGAGCTCTCCACGCGCTTAGAGCCGGCGCTATATCCGCTAACAAGGCCAGCAAGGCTTATGGTATTCCTAGCAGCACCTTGTACAAGATAGCTCGTCGCGAGGGCATCCGGCTCGCGGCGCCGTTCAACGCGGCGCCGGTGTCGTGGCGGCGCGGGGACCTGCAGCGCGCGCTGGCAGCCATCCGCGCCGGCCGCGCCTCCGTGCAGCGCGCCGCCTCGCACTACGGGATCCCTACTGgcaCTCTTTATGGACGTTGTAAACGGGAAGGCATAGAGTTGTCCCGATCGAATCCAACACCGTGGTCTGAAGACGCTATGGGTGAGGCCCTGGAAGCAGTCAgGGTTGGCCAGATGTCCATTAACCAGGCAGCTATACACTACAACCTGCCATATTCTTCATTGTACGGAAGATTCAAGAGATGCAAATATCAGGCACagCCCATGTCTCAGCAAGAAATGCCTCACGTTCCTGAGTCGGTCCAGAACCAGCAAGATTTGAACTACTTCCATCAAATGCCCGTCTATCCAGAACAGGAGCAATCCATCCATCATCCATACCCTCACGTTGTTCAAGATACATCGACGCACGGGAACGCGATGCTGCAAGATCCTTATACTGGGCAAGCGATGTATTACAACCAGAGTTTTAGCAGCATTGCCACCAGCTGA
- Protein Sequence
- MPGPETATVKCEPLSDEDDNIPQLPELFINNTLPSEFQPLTTAAFTSVKAGADCHNDDVMPSLLHHLRSSEGLEELVPLAPAGPAATPVCVKQEPRERPALDLETLEPALPRHSTGSVLERHHMAMLRSPELPDSASFTPLLAVKDEPSSEGEQQYLSGDELSDSCALAEPSTRGSPKSWRQQDMDNALDALRNHNMSLTKASSTYGIPSTTLWQRAHRLGIDTPKKEGITKSWSEADLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPVSWRRGDLQRALAAIRAGRASVQRAASHYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQAQPMSQQEMPHVPESVQNQQDLNYFHQMPVYPEQEQSIHHPYPHVVQDTSTHGNAMLQDPYTGQAMYYNQSFSSIATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00663004;
- 90% Identity
- iTF_01170492;
- 80% Identity
- -